ADAMTS8 Gene
protein-coding GIFtS : 52
GC11M126229
ADAM metallopeptidase with thrombospondin type 1 motif, 8 (Previous names: a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 8 )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases & Descriptionsfor ADAMTS8 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions ADAM metallopeptidase with thrombospondin type 1 motif, 81 2 ADAMTS-82 3 METH21 2 3 5 ADAM-TS 82 3 ADAM-TS81 2 3 METH-82 3 a disintegrin-like and metalloprotease (reprolysin type) with thrombospondintype 1 motif, 81 2 A disintegrin and metalloproteinase with thrombospondin motifs 82 FLJ417121 2 EC 3.4.24.-3 METH-22 3
Export aliases for ADAMTS8 gene to outside databases Previous GC identifers: GC11M132275 GC11M131787 GC11M130308 GC11M129812 GC11M129780
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Summariesfor ADAMTS8 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for ADAMTS8 : This gene encodes a member of the ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) protein family. Members of the family share several distinct protein modules, including a propeptide region, a metalloproteinase domain, a disintegrin-like domain, and a thrombospondin type 1 (TS) motif. Individual members of this family differ in the number of C-terminal TS motifs, and some have unique C-terminal domains. The enzyme encoded by this gene contains two C-terminal TS motifs, and disrupts angiogenesis in vivo. A number of disorders have been mapped in the vicinity of this gene, most notably lung neoplasms. (provided by RefSeq) UniProtKB/Swiss-Prot: ATS8_HUMAN, Q9UP79 Function : Has anti-angiogenic propertiesGene Wiki entry for ADAMTS8
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Genomic Viewsfor ADAMTS8 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the ADAMTS8 gene promoter: ATF MIF-1 NF-kappaB2 NF-kappaB NF-kappaB1 GR-alpha ER-alpha MyoD C/EBPalpha POU2F1 Other transcription factors Search SABiosciences Chromatin IP Primers for ADAMTS8 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for ADAMTS8
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 11q25 Ensembl cytogenetic band: 11q24.3 HGNC cytogenetic band: 11q25 ADAMTS8 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11M126229: view genomic region
(about GC identifiers )
Start:
126,229,030 bp from pter
End:
126,252,351 bp from pter
Size:
23,322 bases
Orientation:
minus strand
1 alternative location : Chr 11- 130,274,820-130,298,539
RefSeq DNA sequence: NC_000011.9 NT_033899.8
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Proteinsfor ADAMTS8 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: ATS8_HUMAN, Q9UP79 (See
protein sequence )Recommended Name: A disintegrin and metalloproteinase with thrombospondin motifs 8 precursor Size : 889 amino acids; 96460 Da
Cofactor : Binds 1 zinc ion per subunit (By similarity)
Subcellular location : Secreted, extracellular space, extracellular matrix (By similarity)
Secondary accessions : Q9NZS0Explore the universe of human proteins at neXtProt for ADAMTS8: NX_Q9UP79 Post-translational modifications:
The precursor is cleaved by a furin endopeptidase (By similarity)1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_008968.4 ENSEMBL proteins: ENSP00000405370 ENSP00000257359 Human Recombinant Proteins 3 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005576 extracellular region
IEA -- GO:0005578 proteinaceous extracellular matrix
IEA -- GO:0031012 extracellular matrix
-- --
About this table
ADAMTS8 for ontologies About GeneDecksing Antibodies for ADAMTS8: Assays for ADAMTS8:
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Protein
Domains/ Familiesfor ADAMTS8 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
ADAMTS8 for domains About GeneDecksing 5/6 InterPro domains/families (see all 6 ):
Graphical View of Domain Structure for InterPro Entry Q9UP79 ProtoNet protein and cluster: Q9UP79
5 Blocks protein families : IPB000884 Thrombospondin IPB001762 Disintegrin IPB002870 Metalloendopeptidase M12B IPB008085 Thrombospondin type 1 repeat signature IPB010294 ADAM-TS Spacer 1 UniProtKB/Swiss-Prot: ATS8_HUMAN, Q9UP79 Domain : The spacer domain and the TSP type-1 domains are important for a tight interaction with the extracellularmatrix Similarity : Contains 1 disintegrin domainSimilarity : Contains 1 peptidase M12B domainSimilarity : Contains 2 TSP type-1 domains
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Gene Functionfor ADAMTS8 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: ATS8_HUMAN, Q9UP79 Function : Has anti-angiogenic propertiesEnzyme Number (IUBMB): EC 3.4.24.-
5/8 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 8 ):
About this table
ADAMTS8 for ontologies About GeneDecksing
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Pathways & Interactionsfor ADAMTS8 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Pathway-Focused PCR Array including ADAMTS8 : PAHS-013A Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ADAMTS8 2 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
About this table
ADAMTS8 for ontologies About GeneDecksing
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Drugs & Compoundsfor ADAMTS8 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for ADAMTS8
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Transcriptsfor ADAMTS8 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for ADAMTS8 gene: NM_007037.4
Additional cDNA sequence: AB209717.1 AF060153.1 AF175283.1 AK123706.1 BC089435.1 BC113874.1 BC114624.1
8 DOTS entries : DT.120727753 DT.102826821 DT.91753837 DT.101980577 DT.106087 DT.120727736 DT.106086 DT.100845050
24/68 AceView cDNA sequences (see all 68 ):
CA440574 AA350802 CO248849 AK123706 BF221873 BM988619 BQ013052 CO398765 AI811557 CO393893 CF126031 AI138443 BM726460 CO246413 CF125500 AA693573 AI291502 CO249109 CO247431 BF033017 AF175283 AW137467 BM701548 CO246112
highest scoring ESTs for ADAMTS8 :AF060153 AI400905 AA350802 AA635657 AF175283 AI378857 AI674956 AI969885 AW137467 BF033017 Unigene Cluster for ADAMTS8:
ADAM metallopeptidase with thrombospondin type 1 motif, 8 Hs.271605 [show with all ESTs ] Unigene Representative Sequence: AF060153 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for ADAMTS8 ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8a · 8b ^ 9 ^ 10 SP1 :             -   -         -       SP2 :         -   -   -   -   -   -   -   -   -     SP3 :                       -       SP4 :                            
About this scheme ECgene alternative splicing isoforms for ADAMTS8 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000414575 ENST00000257359 (uc001qgf.2 uc001qgg.3 )
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Expression for ADAMTS8 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section ADAMTS8 expression in normal and diseased human tissues 1 / 2 / 3
8 probe-sets matching ADAMTS8 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
88879_at2 , 3
U95-E
1
1.00
1.00
0.85
1.14
AI378857
0.60
1.00
0.82
1
85346_at2 , 3
U95-E
1
0.75
1.00
0.34
0.87
AI400905
0.80
1.00
0.91
1
235649_at2 , 3
U133-B
1
1.00
1.00
--
--
AW207389
0.40
1.00
0.76
1
220677_s_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_007037
0.60
1.00
0.82
1
220676_at2 , 3
U133-A
1
0.64
1.00
--
--
NM_007037
0.60
1.00
0.82
1
235649_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
220677_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
220676_at2
U133Plus2
1
0.64
1.00
--
--
--
--
--
--
--
About this table
ADAMTS8 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTCTCAGGCT SOURCE GeneReport for Unigene cluster: Hs.271605 UniProtKB/Swiss-Prot: ATS8_HUMAN, Q9UP79 Tissue specificity : Highly expressed in adult and fetal lung, lower expression in brain, placenta, heart, stomach andfetal brain and kidney
SABiosciences Expression via Pathway-Focused PCR Array including ADAMTS8 : PAHS-013A
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Orthologsfor ADAMTS8 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for ADAMTS8 gene from 5/6 species (see all 6 )
About this table Species with no ortholog for ADAMTS8 ENSEMBL Gene Tree for ADAMTS8 (if available)
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Paralogsfor ADAMTS8 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for ADAMTS8 gene ADAMTS4 2 ADAMTS15 2 ADAMTS1 2 ADAMTS9 2 ADAMTS20 2
ADAMTS8 for paralogs About GeneDecksing
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Genomic Variantsfor ADAMTS8 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 11 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for ADAMTS8 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for ADAMTS8 1 CNV : 3869
QIAGEN SeqTarget long-range PCR primers for resequencing ADAMTS8
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Disorders & Mutationsfor ADAMTS8 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
ADAMTS8 for disorders About GeneDecksing
OMIM: 605175 Human Genome Epidemiology (HuGE) Navigator: ADAMTS8 (1 document)Export disorders and mutations for ADAMTS8 gene to outside databases
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Medical Newsfor ADAMTS8 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor ADAMTS8 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/14 PubMed articles for ADAMTS8 gene, integrated from 7 sources (see all 14 ): (articles sorted by number of sources associating them with ADAMTS8) METH-1, a human ortholog of ADAMTS-1, and METH-2 are members of a new family of proteins with angio-inhibitory activity. (PubMed id 10438512) 1 , 2 , 3, 7 Vazquez F.... Iruela-Arispe M.L. (1999) ADAM-TS8, a novel metalloprotease of the ADAM-TS family located on mouse chromosome 9 and human chromosome 11. (PubMed id 10610729) 1 , 2 , 7 Georgiadis K.E.... Apte S.S. (1999) METH-2 silencing and promoter hypermethylation in NSCLC. (PubMed id 15328519) 1 , 7 Dunn J.R....Liloglou T. (2004) ADAMTS-8 exhibits aggrecanase activity and is expressed in human articular cartilage. (PubMed id 15296936) 1 , 7 Collins-Racie L.A....LaVallie E.R. (2004) Human Variation in Alcohol Response Is Influenced by Variation in Neuronal Signaling Genes. (PubMed id 20201926) 1 Joslyn G....White R.L. (2010) ADAMTS-4 and -8 are inflammatory regulated enzymes expressed in macrophage-rich areas of human atherosclerotic plaques. (PubMed id 17606262) 1 Wagsater D....Eriksson P. (2008) Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross- validation of MS/MS and MS/MS/MS spectra. (PubMed id 17924679) 2 Yu L.-R.... Veenstra T.D. (2007) ADAMTS8 and ADAMTS15 expression predicts survival in human breast carcinoma. (PubMed id 16152618) 1 Porter S....Edwards D.R. (2006) Expression of ADAMTS-8, a secreted protease with antiangiogenic properties, is downregulated in brain tumours. (PubMed id 16570050) 1 Dunn J.R....Walker C. (2006) Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811) 2 Taylor T.D....Sakaki Y. (2006)
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External Searches for ADAMTS8 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing ADAMTS8 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing ADAMTS8 gene
(According to HUGE )
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Specialized Databases showing ADAMTS8 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for ADAMTS8 gene: Search GeneIP for patents involving ADAMTS8 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor ADAMTS8 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for ADAMTS8
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Aliases for ADAMTS8
Databases for ADAMTS8
Disorders for ADAMTS8
Domains/Families for ADAMTS8
Drugs/Compounds for ADAMTS8
Expression for ADAMTS8
Function for ADAMTS8
Genomic Views for ADAMTS8
Intellectual Property for ADAMTS8
Medical News for ADAMTS8
Orthologs for ADAMTS8
Paralogs for ADAMTS8
Pathways/Interactions for ADAMTS8
Products for ADAMTS8
Proteins for ADAMTS8
Publications for ADAMTS8
Search Box for ADAMTS8
Summaries for ADAMTS8
Transcripts for ADAMTS8
Variants for ADAMTS8
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