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Aliases & Descriptionsfor AFM gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions afamin1 2 ALF2 ALB21 2 3 5 MGC1253392 ALBA1 2 3 5 alpha-albumin2 MGC1253382 Alpha-albumin3 alpha-Alb2 Alpha-Alb3
Export aliases for AFM gene to outside databases Previous GC identifers: GC04P074336 GC04P074587 GC04P074748 GC04P074813 GC04P074712 GC04P074566
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Summariesfor AFM gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for AFM : This gene is a member of the albumin gene family, which is comprised of four genes that localize to chromosome 4 in a tandem arrangement. These four genes encode structurally-related serum transport proteins that are known to be evolutionarily related. The protein encoded by this gene is regulated developmentally, expressed in the liver and secreted into the bloodstream. (provided by RefSeq) UniProtKB/Swiss-Prot: AFAM_HUMAN, P43652 Function : Possible role in the transport of yet unknown ligandGene Wiki entry for AFM
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Genomic Viewsfor AFM gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the AFM gene promoter: CUTL1 HNF-1A MEF-2A FOXO3a FOXO3b Nkx6-1 MRF-2 C/EBPbeta Other transcription factors Search SABiosciences Chromatin IP Primers for AFM Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 4q13.3 Ensembl cytogenetic band: 4q13.3 HGNC cytogenetic band: 4q13.3 AFM Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure
GeneLoc location for GC04P070158: view genomic region
(about GC identifiers )
Start:
70,158,855 bp from pter
End:
70,181,099 bp from pter
Size:
22,245 bases
Orientation:
plus strand
1 alternative location : Chr 4+ 74,347,400-74,369,691
RefSeq DNA sequence: NC_000004.11 NT_022778.16
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Proteinsfor AFM gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: AFAM_HUMAN, P43652 (See
protein sequence )Recommended Name: Afamin precursor Size : 599 amino acids; 69069 Da
Subcellular location : Secreted
Secondary accessions : A8K3E1 Q32MR3Explore the universe of human proteins at neXtProt for AFM: NX_P43652 Post-translational modifications:
N-glycosylated1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_001124.1 ENSEMBL proteins: ENSP00000226355 Human Recombinant Proteins 2 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005576 extracellular region
IEA -- GO:0005615 extracellular space
IEA --
About this table
AFM for ontologies About GeneDecksing Antibodies for AFM: Assays for AFM:
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Protein
Domains/ Familiesfor AFM gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
AFM for domains About GeneDecksing 5/6 InterPro domains/families (see all 6 ):
Graphical View of Domain Structure for InterPro Entry P43652 ProtoNet protein and cluster: P43652
1 Blocks protein family : IPB000264 Serum albumin family UniProtKB/Swiss-Prot: AFAM_HUMAN, P43652 Similarity : Belongs to the ALB/AFP/VDB familySimilarity : Contains 3 albumin domains
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Gene Functionfor AFM gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: AFAM_HUMAN, P43652 Function : Possible role in the transport of yet unknown ligand
Genatlas biochemistry entry for AFM :afamin,87kDa,albumin superfamily
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Pathways & Interactionsfor AFM gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for AFM Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for AFM 1 Gene Ontology (GO) biological process term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006810 transport
IEA --
About this table
AFM for ontologies About GeneDecksing
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Drugs & Compoundsfor AFM gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
AFM for compounds About GeneDecksing Browse Tocris compounds for AFM 3 Novoseek chemical compound relationships for AFM gene
About this table
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Transcriptsfor AFM gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for AFM gene: NM_001133.2
Additional cDNA sequence: AK290556.1 BC109020.1 BC109021.1 L35498.1
6 DOTS entries : DT.208928 DT.202804 DT.75100220 DT.91948823 DT.92422309 DT.92422310
24/31 AceView cDNA sequences (see all 31 ):
L35497 AW235536 NM_001133 BX103962 AI247575 L35486 BX110719 CB157386 BF197337 AA878846 L35498 BF434245 AW051948 AI671722 AI492289 AH003117 AA706914 CB162042 T67570 T67409 L32140 AI670879 AA501625 AV694104
highest scoring ESTs for AFM :AA878846 AW051948 AW235536 BF197337 BF434245 BF511963 CB157386 L32140 L35498 T67409 Unigene Cluster for AFM:
Afamin Hs.168718 [show with all ESTs ] Unigene Representative Sequence: NM_001133 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for AFM ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b ^ 13a · 13b ^ 14 ^ 15 ^ 16 SP1 :       -             -                       SP2 :                                         SP3 :                                         SP4 :                         -                
About this scheme ECgene alternative splicing isoforms for AFM 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000226355 (uc003hhb.2 ) ENST00000505794
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Expression for AFM gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section AFM expression in normal and diseased human tissues 1 / 2 / 3
4 probe-sets matching AFM gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
33564_at2 , 3
U95-A
1
0.62
1.00
0.99
1.06
L32140
0.80
1.00
0.91
1
83294_at2 , 3
U95-D
1
0.44
1.00
0.98
1.03
AI671722
0.60
1.00
0.82
1
206840_at2 , 3
U133-A
1
0.73
1.00
--
--
NM_001133
0.60
1.00
0.82
1
206840_at2
U133Plus2
1
0.73
1.00
--
--
--
--
--
--
--
About this table
AFM for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AACTCACAGA SOURCE GeneReport for Unigene cluster: Hs.168718 Expression variation in blood from EXPOLDB for AFM
SABiosciences Custom PCR Arrays for AFM
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Orthologsfor AFM gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for AFM gene from 5 species
About this table Species with no ortholog for AFM ENSEMBL Gene Tree for AFM (if available)
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Paralogsfor AFM gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for AFM gene ALB 2 GC 2 AFP 2
AFM for paralogs About GeneDecksing
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Genomic Variantsfor AFM gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 4 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for AFM (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for AFM: --
QIAGEN SeqTarget long-range PCR primers for resequencing AFM
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Disorders & Mutationsfor AFM gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
AFM for disorders About GeneDecksing
OMIM: 104145 Export disorders and mutations for AFM gene to outside databases
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Medical Newsfor AFM gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor AFM gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/37 PubMed articles for AFM gene, integrated from 7 sources (see all 37 ): (articles sorted by number of sources associating them with AFM) Afamin is a new member of the albumin, alpha-fetoprotein, and vitamin D-binding protein gene family. (PubMed id 7517938) 1 , 2 , 3, 7 Lichenstein H.S....Zukowski M.M. (1994) Complete structure of the human alpha-albumin gene, a new member of the serum albumin multigene family. (PubMed id 8755513) 1 , 2 , 7 Nishio H. and Dugaiczyk A. (1996) Identification of rat alpha-albumin and cDNA cloning of its human ortholog. (PubMed id 7875606) 1 , 2 , 7 Allard D.... Belanger L. (1995) Identification of N-linked glycoproteins in human saliva by glycoprotein capture and mass spectrometry. (PubMed id 16740002) 1 , 2 Ramachandran P....Loo J.A. (2006) Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952) 1 , 2 Liu T.... Smith R.D. (2005) Screening for N-glycosylated proteins by liquid chromatography mass spectrometry. (PubMed id 14760718) 1 , 2 Bunkenborg J.... Wisniewski J.R. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Afamin and apolipoprotein A-IV: novel protein markers for ovarian cancer. (PubMed id 19336561) 1 , 7 Dieplinger H....Stieber P. (2009) Afamin is a novel human vitamin E-binding glycoprotein characterization and in vitro expression. (PubMed id 15952736) 1 , 7 Jerkovic L....Dieplinger H. (2005) Afamin is synthesized by cerebrovascular endothelial cells and mediates alpha-tocopherol transport across an in vitro model of the blood-brain barrier. (PubMed id 19046407) 1 , 7 Kratzer I....Sattler W. (2009)
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External Searches for AFM gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing AFM gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing AFM gene
(According to HUGE )
About This Section --
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Specialized Databases showing AFM gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for AFM gene: Search GeneIP for patents involving AFM GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor AFM gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Antibodies & Assays for AFM  
Search Tocris compounds for AFM
ELISAs and CLIAs for AFM
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