Aliases &
Descriptions
for ANKRD37 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
About This Section
|
| Aliases & Descriptions |
|---|
| ankyrin repeat domain 371 2 | | low density lipoprotein receptor-related protein binding protein2 | | Lrp2bp1 2 | | MGC1115072 | | Low-density lipoprotein receptor-related protein 2-binding protein2 3 | | ankyrin repeat domain-containing protein 372 | | hLrp2bp2 3 | | LPR2BP3 |
Export aliases for ANKRD37 gene to outside databasesPrevious GC identifers: GC04P186693 GC04P186554 GC04P186317 |
Summaries
for ANKRD37 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for ANKRD37 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60),
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences)
About This Section
|
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the ANKRD37 gene promoter:
Cdc5 POU2F1 Hlf RORalpha2 POU3F2 POU3F2 (N-Oct-5a) POU3F2 (N-Oct-5b) GATA-1 C/EBPalpha FOXC1
Other transcription factors
Search SABiosciences Chromatin IP Primers for ANKRD37
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for ANKRD37  |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 4q35.1 Ensembl cytogenetic band: 4q35.1 HGNC cytogenetic band: 4q35.1ANKRD37 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure GeneLoc location for GC04P182071: view genomic region
(about GC identifiers)
Start:
|
182,071,296 bp from pter |
End:
|
182,074,843 bp from pter |
Size:
|
3,548 bases |
Orientation:
|
plus strand |
1 alternative location:
| Chr4+ 186,317,175-186,321,782 |
RefSeq DNA sequence:- NC_000004.11 NT_016354.19
|
Proteins
for ANKRD37 gene
(According to
1UniProtKB,
neXtProt,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological, and/or
ProSpec,
Biochemical Assays by
Millipore,
Sigma-Aldrich,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene,
Antibodies by
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals, and/or
Epitomics)
About This Section
|
UniProtKB/Swiss-Prot: ANR37_HUMAN, Q7Z713 (See
protein sequence)Recommended Name: Ankyrin repeat domain-containing protein 37 Size: 158 amino acids; 16872 Da
Subcellular location: Nucleus. CytoplasmExplore the universe of human proteins at neXtProt for ANKRD37: NX_Q7Z713
REFSEQ proteins: NP_859077.1
ENSEMBL proteins: ENSP00000335147 ENSP00000427192 ENSP00000421529
Human Recombinant Proteins
2 Gene Ontology (GO) cellular component terms (GO ID links to tree view): About this table
ANKRD37 for ontologies About GeneDecksing
Antibodies for ANKRD37:
Assays for ANKRD37: |
Protein
Domains/
Families
for ANKRD37 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
ANKRD37 for domains About GeneDecksing
2 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q7Z713ProtoNet protein and cluster: Q7Z713 1 Blocks protein family: IPB002110 Ankyrin repeat signature
UniProtKB/Swiss-Prot: ANR37_HUMAN, Q7Z713Similarity: Contains 3 ANK repeats |
Gene Function
for ANKRD37 gene
(According to UniProtKB,
IUBMB,and/or
Genatlas, Animal models from MGI Dec 24 2010,
shRNA from
OriGene,
Sigma-Aldrich,
RNAi from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Clones from Millipore,
Sigma-Aldrich,
OriGene,
GenScript,
Sino Biological,
Cell Lines from GenScript,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene.)
About This Section
|
|
Pathways & Interactions
for ANKRD37 gene
(Pathways according to
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
PCR Arrays from
SABiosciences,
Proteins Network according to
SABiosciences,
Sigma-Aldrich,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene).
About This Section
|
SABiosciences Custom Pathway-Focused PCR Arrays for ANKRD37
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ANKRD37
|
Drugs & Compounds
for ANKRD37 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for ANKRD37
|
Transcripts
for ANKRD37 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Tagged/untagged cDNA clones from
OriGene,
Sigma-Aldrich,
GenScript,
Primers from
OriGene and/or
SABiosciences)
About This Section
|
REFSEQ mRNAs for ANKRD37 gene: NM_181726.2 Additional cDNA sequence: AK127395.1 AK303243.1 AY296056.1 BC088376.1 7 DOTS entries: DT.99928380 DT.100810742 DT.92440901 DT.97858856 DT.121224482 DT.100810754 DT.40129238 24/107 AceView cDNA sequences (see all 107): BM716455 AI216877 CA450084 CA391165 BQ575105 AA934911 AI950798 AA885898 BM987064 R81196 AA869002 AW610097 AI375295 AI797540 BM997127 AI333984 CA748553 AW664874 AA961059 BM696704 AA886870 W23609 AI937434 AI382103
 highest scoring ESTs for ANKRD37:AA886870 AY296056 CA313926 CB997167 CD358544 CN478776 CN478805 AA013258 AA128334 AA136262 Unigene Cluster for ANKRD37: Ankyrin repeat domain 37 Hs.508154 [show with all ESTs]Unigene Representative Sequence: AK127395
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD37
| ExUns: | 1 | ^ | 2a | · | 2b | · | 2c | · | 2d | ^ | 3a | · | 3b | ^ | 4a | · | 4b | · | 4c | ^ | 5a | · | 5b | ^ | 6 |
|---|
|
| SP1: | | | | | | | | | | | | | | | | | | | | | | | - | | | | |
| SP2: | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP3: | | | - | | - | | - | | - | | | | | | | | | | | | | | | | | | |
| SP4: | | | - | | | | | | | | | | | | | | | | | | | | | | | | |
| SP5: | | | | | | | | | | | | | | | - | | | | | | | | | | | |
About this scheme
ECgene alternative splicing isoforms for ANKRD37
6 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000511393(uc011cks.1) ENST00000507479 ENST00000335174(uc003ixm.2)
ENST00000506424 ENST00000511311 ENST00000507753
|
Expression
for ANKRD37 gene
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Primers from
OriGene and/or
SABiosciences
)
About This Section
| ANKRD37 expression in normal and diseased human tissues
1 / 2 / 3 5 probe-sets matching ANKRD37 gene
Affymetrix
probe-set |
Array |
GeneAnnot data |
GeneNote data |
GeneTide data |
| # genes |
Sensitivity |
Specificity |
Correlation |
Length |
Gb_Accession |
Consensus |
Uniqueness |
Score |
Rank |
| 57772_g_at2, 3
|
U95-B |
1 |
0.69 |
1.00 |
0.93 |
1.90 |
AA886870 |
0.80 |
1.00 |
0.91 |
1 |
| 57769_at2, 3
|
U95-B |
1 |
0.31 |
1.00 |
0.92 |
0.61 |
AA886870 |
0.80 |
1.00 |
0.91 |
1 |
| 75702_at*2, 3
|
U95-D |
1 |
0.50 |
1.00 |
0.84 |
0.56 |
AA508138 |
0.20 |
0.50 |
0.38 |
1 |
| 227337_at2, 3
|
U133-B |
1 |
0.82 |
1.00 |
-- |
-- |
AA886870 |
0.80 |
1.00 |
0.91 |
1 |
| 227337_at2
|
U133Plus2 |
1 |
0.82 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
About this table
ANKRD37 for expression About GeneDecksing
Data from
Genenote
(Publications) and GNF BioGPS
About these images
About these images
CGAP SAGE TAG: CCTATAATAT
SOURCE GeneReport for Unigene cluster: Hs.508154
UniProtKB/Swiss-Prot: ANR37_HUMAN, Q7Z713Tissue specificity: Mainly expressed in testis, small intestine, colon, blood leukocytes and in pancreaticadenocarcinoma cells
SABiosciences Custom PCR Arrays for ANKRD37
|
Orthologs
for ANKRD37 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ANKRD37 gene from 5/8 species (see all 8)
About this table Species with no ortholog for ANKRD37
ENSEMBL Gene Tree for ANKRD37 (if available) |
Paralogs
for ANKRD37 gene(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| Paralogs for ANKRD37 gene
- ANKRD102
ANKRD37 for paralogs About GeneDecksing
|
Genomic Variants
for ANKRD37 gene(SNPs according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Chr 4 pos | Sequence | Recs | AA
Chg | Type | More | Recs | Allele
freq | Pop | Total
sample | More |
|---|
About this tableHapMap Linkage Disequilibrium images for ANKRD37 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for ANKRD37
1 CNV: 3530 | | QIAGEN SeqTarget long-range PCR primers for resequencing ANKRD37 |
|
Disorders & Mutations
for ANKRD37 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
LSDB, HGMD, GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Medical News
for ANKRD37 gene(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications
for ANKRD37 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6UniProtKB/TrEMBL, and/or
7Novoseek)
About This Section
|
4 PubMed articles for ANKRD37 gene integrated from 7 sources:
(articles sorted by number of sources associating them with ANKRD37)- Molecular cloning and characterization of a novel human gene containing 4 ankyrin repeat domains. (PubMed id 15809689)1, 2, 7 Li J....Mao Y. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- An integrative genomics approach identifies Hypoxia I nducible Factor-1 (HIF-1)-target genes that form the core response to hypoxia. (PubMed id 19491311)1 Benita Y....Xavier R.J. (2009)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for ANKRD37 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing ANKRD37 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ANKRD37 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ANKRD37 gene(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for ANKRD37 gene:
Search GeneIP for patents involving ANKRD37
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ANKRD37 gene(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or
Enzo Life Sciences)
About This Section
|
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| |  | Search Tocris compounds for ANKRD37 |
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