Aliases &
Descriptions
for ARL6IP6 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
About This Section
|
| Aliases & Descriptions |
|---|
| ADP-ribosylation-like factor 6 interacting protein 61 2 | | regulated by phosphonoformate2 | | MGC338641 2 | | ADP-ribosylation-like factor 6-interacting protein 62 | | Phosphonoformate immuno-associated protein 12 3 | | ADP-ribosylation factor-like protein 6-interacting protein 62 | | PFAAP12 3 | | aip-62 | | ARL-6-interacting protein 62 3 | | Aip-63 |
Export aliases for ARL6IP6 gene to outside databasesPrevious GC identifers: GC02P153400 GC02P153282 GC02P153574 |
Summaries
for ARL6IP6 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for ARL6IP6 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60),
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences)
About This Section
|
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the ARL6IP6 gene promoter:
TFIID TBP POU2F1 E2F-5 E2F-4 E2F-3a E2F-2 E2F-1 E2F AhR
Other transcription factors
Search SABiosciences Chromatin IP Primers for ARL6IP6
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for ARL6IP6  |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 2q23.3 Ensembl cytogenetic band: 2q23.3 HGNC cytogenetic band: 2q23ARL6IP6 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02P145460: view genomic region
(about GC identifiers)
Start:
|
145,460,793 bp from pter |
End:
|
145,504,138 bp from pter |
Size:
|
43,346 bases |
Orientation:
|
plus strand |
1 alternative location:
| Chr2+ 153,574,407-153,617,688 |
RefSeq DNA sequence:- NC_000002.11 NT_005403.17
|
Proteins
for ARL6IP6 gene
(According to
1UniProtKB,
neXtProt,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological, and/or
ProSpec,
Biochemical Assays by
Millipore,
Sigma-Aldrich,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene,
Antibodies by
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals, and/or
Epitomics)
About This Section
|
UniProtKB/Swiss-Prot: AR6P6_HUMAN, Q8N6S5 (See
protein sequence)Recommended Name: ADP-ribosylation factor-like protein 6-interacting protein 6 Size: 226 amino acids; 24676 Da
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Secondary accessions: B2RDS6 Q7Z4G7Explore the universe of human proteins at neXtProt for ARL6IP6: NX_Q8N6S5
Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_689735.1
ENSEMBL proteins: ENSP00000395052 ENSP00000315357 ENSP00000399141
Human Recombinant Proteins
2 Gene Ontology (GO) cellular component terms (GO ID links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0016020 | membrane |
IEA | -- | | GO:0016021 | integral to membrane |
IEA | -- |
About this table
ARL6IP6 for ontologies About GeneDecksing
Antibodies for ARL6IP6:
Assays for ARL6IP6: |
Protein
Domains/
Families
for ARL6IP6 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q8N6S5 UniProtKB/Swiss-Prot: AR6P6_HUMAN, Q8N6S5Similarity: Belongs to the ARL6IP6 family |
Gene Function
for ARL6IP6 gene
(According to UniProtKB,
IUBMB,and/or
Genatlas, Animal models from MGI Dec 24 2010,
shRNA from
OriGene,
Sigma-Aldrich,
RNAi from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Clones from Millipore,
Sigma-Aldrich,
OriGene,
GenScript,
Sino Biological,
Cell Lines from GenScript,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene.)
About This Section
|
1 Gene Ontology (GO) molecular function term (GO ID links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005515 | protein binding |
IEA | -- |
About this table
ARL6IP6 for ontologies About GeneDecksing
|
Pathways & Interactions
for ARL6IP6 gene
(Pathways according to
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
PCR Arrays from
SABiosciences,
Proteins Network according to
SABiosciences,
Sigma-Aldrich,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene).
About This Section
|
SABiosciences Custom Pathway-Focused PCR Arrays for ARL6IP6
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ARL6IP6
|
Drugs & Compounds
for ARL6IP6 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for ARL6IP6
|
Transcripts
for ARL6IP6 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Tagged/untagged cDNA clones from
OriGene,
Sigma-Aldrich,
GenScript,
Primers from
OriGene and/or
SABiosciences)
About This Section
|
REFSEQ mRNAs for ARL6IP6 gene: NM_152522.4 Additional cDNA sequence: AF530059.1 AK023109.1 AK094696.1 AK315657.1 BC028741.2 BC070140.1 CR600798.1 CR611032.1 8 DOTS entries: DT.101962744 DT.85101155 DT.97806522 DT.99933065 DT.92432401 DT.92432398 DT.95163394 DT.40131765 24/112 AceView cDNA sequences (see all 112): BF222824 BQ027456 R38845 CR600798 BE514712 CA941829 BQ014874 CR611032 AW009231 AI457767 BC070140 AI955090 BQ009462 AI953327 AI453208 AW235205 AI807108 BQ071398 CD743213 BE672136 AI333127 BX433928 BG616092 AW134479
 highest scoring ESTs for ARL6IP6:AA169778 AA129438 AA213523 AA250931 AA283145 AA488229 AA644639 AA654338 AA731403 AA968479 Unigene Cluster for ARL6IP6: ADP-ribosylation-like factor 6 interacting protein 6 Hs.516468 [show with all ESTs]Unigene Representative Sequence: NM_152522
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for ARL6IP6 (see all 6)
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | ^ | 3 | ^ | 4a | · | 4b | ^ | 5 | ^ | 6a | · | 6b | ^ | 7a | · | 7b | · | 7c | · | 7d | · | 7e |
|---|
|
| SP1: | | | | | | | | | - | | - | | | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | - | | | | - | | | | | | | | | | | | | | | | |
| SP3: | | | | | - | | - | | - | | - | | | | - | | | | | | | | | | | | | | | | |
| SP4: | | | | | | | | | - | | - | | | | - | | | | | | | | | | | | | | | | |
| SP5: | | | | | | | | | - | | - | | | | - | | - | | | | | | | | | | | | | |
About this scheme
ECgene alternative splicing isoforms for ARL6IP6
5 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000425034 ENST00000463690 ENST00000326446(uc002tyn.2 uc002tym.2 uc002tyo.2)
ENST00000455875 ENST00000495469
|
Expression
for ARL6IP6 gene
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Primers from
OriGene and/or
SABiosciences
)
About This Section
| ARL6IP6 expression in normal and diseased human tissues
1 / 2 / 3 8 probe-sets matching ARL6IP6 gene
Affymetrix
probe-set |
Array |
GeneAnnot data |
GeneNote data |
GeneTide data |
| # genes |
Sensitivity |
Specificity |
Correlation |
Length |
Gb_Accession |
Consensus |
Uniqueness |
Score |
Rank |
| 49751_at2, 3
|
U95-C |
1 |
1.00 |
1.00 |
0.98 |
1.07 |
AA169778 |
1.00 |
1.00 |
1.00 |
1 |
| 77544_at2, 3
|
U95-E |
1 |
0.88 |
1.00 |
0.82 |
0.93 |
AI744445 |
0.80 |
1.00 |
0.91 |
1 |
| 225707_at2, 3
|
U133-B |
1 |
1.00 |
1.00 |
-- |
-- |
AL581082 |
0.80 |
1.00 |
0.91 |
1 |
| 225709_at2, 3
|
U133-B |
1 |
0.73 |
1.00 |
-- |
-- |
AI744445 |
0.80 |
1.00 |
0.91 |
1 |
| 225711_at2, 3
|
U133-B |
1 |
0.64 |
1.00 |
-- |
-- |
AA654338 |
0.80 |
1.00 |
0.91 |
1 |
| 225707_at2
|
U133Plus2 |
1 |
1.00 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
| 225709_at2
|
U133Plus2 |
1 |
0.73 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
| 225711_at2
|
U133Plus2 |
1 |
0.64 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
About this table
ARL6IP6 for expression About GeneDecksing
Data from
Genenote
(Publications) and GNF BioGPS
About these images
About these images
CGAP SAGE TAG: AAATTTTTGT
SOURCE GeneReport for Unigene cluster: Hs.516468
SABiosciences Custom PCR Arrays for ARL6IP6
|
Orthologs
for ARL6IP6 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ARL6IP6 gene from 5/7 species (see all 7)
About this table Species with no ortholog for ARL6IP6
ENSEMBL Gene Tree for ARL6IP6 (if available) |
Paralogs
for ARL6IP6 gene(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| -- |
Genomic Variants
for ARL6IP6 gene(SNPs according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Chr 2 pos | Sequence | Recs | AA
Chg | Type | More | Recs | Allele
freq | Pop | Total
sample | More |
|---|
About this tableHapMap Linkage Disequilibrium images for ARL6IP6 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 3 variations for ARL6IP6
3 CNVs: 90079 4311 8961 | | QIAGEN SeqTarget long-range PCR primers for resequencing ARL6IP6 |
|
Disorders & Mutations
for ARL6IP6 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
LSDB, HGMD, GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Medical News
for ARL6IP6 gene(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications
for ARL6IP6 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6UniProtKB/TrEMBL, and/or
7Novoseek)
About This Section
|
10/12 PubMed articles for ARL6IP6 gene, integrated from 7 sources (see all 12):
(articles sorted by number of sources associating them with ARL6IP6)- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. (PubMed id 18691976)2 Daub H.... Mann M. (2008)
- Evaluation of the low-specificity protease elastase for large-scale phosphoproteome analysis. (PubMed id 19007248)2 Wang B.... Korner R. (2008)
- A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (2008)
- hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
- Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)2 Hillier L.W....Wilson R.K. (2005)
- Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PubMed id 15342556)1 Suzuki Y.... Sugano S. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for ARL6IP6 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing ARL6IP6 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ARL6IP6 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ARL6IP6 gene(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for ARL6IP6 gene:
Search GeneIP for patents involving ARL6IP6
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ARL6IP6 gene(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or
Enzo Life Sciences)
About This Section
|
 | |
 |
| | | |
 |
 |
| | |
 |  |  |  | |
| |  | Search Tocris compounds for ARL6IP6 |
| |  |  |  |  | | | | |
 | | |
|
|
