Aliases &
Descriptions
for ARMC9 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
About This Section
|
| Aliases & Descriptions |
|---|
| armadillo repeat containing 91 2 | | Melanoma/melanocyte-specific tumor antigen KU-MEL-12 3 | | ARM1 2 | | NS212 3 | | KU-MEL-11 2 | | armadillo/beta-catenin-like repeats2 | | FLJ125841 2 | | lisH domain-containing protein ARMC92 | | KIAA18681 3 | | melanoma/melanocyte specific protein KU-MEL-12 |
Export aliases for ARMC9 gene to outside databasesPrevious GC identifers: GC02P231889 GC02P231771 GC02P232064 |
Summaries
for ARMC9 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for ARMC9 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60),
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences)
About This Section
|
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the ARMC9 gene promoter:
GATA-1 GATA-2 TBP GATA-3 CUTL1 HNF-4alpha2 SRF TFIID FOXC1 FOXD3
Other transcription factors
Search SABiosciences Chromatin IP Primers for ARMC9
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for ARMC9  |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 2q37.1 Ensembl cytogenetic band: 2q37.1 HGNC cytogenetic band: 2q37.1ARMC9 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02P223905: view genomic region
(about GC identifiers)
Start:
|
223,905,381 bp from pter |
End:
|
224,051,159 bp from pter |
Size:
|
145,779 bases |
Orientation:
|
plus strand |
1 alternative location:
| Chr2+ 232,063,260-232,239,548 |
RefSeq DNA sequence:- NC_000002.11 NT_005403.17
|
Proteins
for ARMC9 gene
(According to
1UniProtKB,
neXtProt,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological, and/or
ProSpec,
Biochemical Assays by
Millipore,
Sigma-Aldrich,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene,
Antibodies by
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals, and/or
Epitomics)
About This Section
|
UniProtKB/Swiss-Prot: ARMC9_HUMAN, Q7Z3E5 (See
protein sequence)Recommended Name: LisH domain-containing protein ARMC9 Size: 817 amino acids; 91762 Da
Sequence caution: Sequence=BAB14153.1; Type=Erroneous initiation;
Secondary accessions: Q53TI3 Q6P162 Q7L594 Q86WG2 Q96JF9 Q9H9R8Alternative splicing: 2 isoforms: Q7Z3E5-1 Q7Z3E5-2 Explore the universe of human proteins at neXtProt for ARMC9: NX_Q7Z3E5
Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_079415.3
ENSEMBL proteins: ENSP00000258417 ENSP00000387391 ENSP00000407146 ENSP00000392086 ENSP00000413932 ENSP00000411778 ENSP00000388527 ENSP00000352781
Human Recombinant Proteins
Antibodies for ARMC9:
Assays for ARMC9: |
Protein
Domains/
Families
for ARMC9 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
ARMC9 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q7Z3E5ProtoNet protein and cluster: Q7Z3E5 1 Blocks protein family: IPB006594 Lissencephaly type-1-like homology motif
UniProtKB/Swiss-Prot: ARMC9_HUMAN, Q7Z3E5Similarity: Contains 1 LisH domain |
Gene Function
for ARMC9 gene
(According to UniProtKB,
IUBMB,and/or
Genatlas, Animal models from MGI Dec 24 2010,
shRNA from
OriGene,
Sigma-Aldrich,
RNAi from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Clones from Millipore,
Sigma-Aldrich,
OriGene,
GenScript,
Sino Biological,
Cell Lines from GenScript,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene.)
About This Section
|
1 Gene Ontology (GO) molecular function term (GO ID links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005488 | binding |
IEA | -- |
About this table
ARMC9 for ontologies About GeneDecksing
|
Pathways & Interactions
for ARMC9 gene
(Pathways according to
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
PCR Arrays from
SABiosciences,
Proteins Network according to
SABiosciences,
Sigma-Aldrich,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene).
About This Section
|
SABiosciences Custom Pathway-Focused PCR Arrays for ARMC9
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for ARMC9
|
Drugs & Compounds
for ARMC9 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for ARMC9
|
Transcripts
for ARMC9 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Tagged/untagged cDNA clones from
OriGene,
Sigma-Aldrich,
GenScript,
Primers from
OriGene and/or
SABiosciences)
About This Section
|
REFSEQ mRNAs for ARMC9 gene: NM_025139.3 Additional cDNA sequence: AB058771.1 AK022646.1 AK309395.1 AY219922.1 AY929062.1 BC004514.2 BC017229.2 BC065271.1 BX537956.1 CR608697.1 14 DOTS entries: DT.87015163 DT.95210377 DT.86857823 DT.40207557 DT.105733 DT.401546 DT.100638454 DT.97858546 DT.120993262 DT.209017 DT.40129282 DT.421997 DT.100782611 DT.99993407 24/117 AceView cDNA sequences (see all 117): BM685292 BM990717 BQ423528 BM723527 BM988551 AB058771 AI741507 AI274627 AI342531 CN479949 BM835538 BX111921 AA309729 BC017229 CR608697 CA427360 Z38862 AI018174 BX103854 BC004514 BU183424 BG764906 BM563736 BF525768
 highest scoring ESTs for ARMC9:AL534959 BG027609 BM685292 BM930775 BM990541 BX103854 CA427360 CB305674 CN479949 N39824 Unigene Cluster for ARMC9: Armadillo repeat containing 9 Hs.471610 [show with all ESTs]Unigene Representative Sequence: AB058771
GeneLoc Exon Structure
15 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000349938(uc002vrq.3 uc002vrp.3) ENST00000482392 ENST00000440107
ENST00000483477(uc002vrr.1) ENST00000469789 ENST00000444285 ENST00000436339
ENST00000467698 ENST00000424740 ENST00000446447 ENST00000481520 ENST00000428662
ENST00000486787 ENST00000488821 ENST00000359743
|
Expression
for ARMC9 gene
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Primers from
OriGene and/or
SABiosciences
)
About This Section
| ARMC9 expression in normal and diseased human tissues
1 / 2 / 3 11 probe-sets matching ARMC9 gene
Affymetrix
probe-set |
Array |
GeneAnnot data |
GeneNote data |
GeneTide data |
| # genes |
Sensitivity |
Specificity |
Correlation |
Length |
Gb_Accession |
Consensus |
Uniqueness |
Score |
Rank |
| 50727_at2, 3
|
U95-B |
1 |
1.00 |
1.00 |
0.95 |
0.54 |
N39824 |
0.80 |
1.00 |
0.91 |
1 |
| 72926_at2, 3
|
U95-D |
1 |
1.00 |
1.00 |
0.89 |
1.33 |
AI638332 |
0.60 |
1.00 |
0.82 |
1 |
| 42681_at2, 3
|
U95-B |
1 |
0.69 |
1.00 |
0.18 |
1.16 |
AA158623 |
0.60 |
1.00 |
0.82 |
1 |
| 219636_s_at2, 3
|
U133-A |
1 |
1.00 |
1.00 |
-- |
-- |
NM_025139 |
0.60 |
1.00 |
0.82 |
1 |
| 219637_at2, 3
|
U133-A |
1 |
0.91 |
1.00 |
-- |
-- |
NM_025139 |
0.60 |
1.00 |
0.82 |
1 |
| 220754_at2, 3
|
U133-A |
1 |
0.55 |
1.00 |
-- |
-- |
NM_024720 |
0.20 |
1.00 |
0.72 |
1 |
| 235938_at2, 3
|
U133-B |
1 |
0.46 |
1.00 |
-- |
-- |
AI018174 |
0.20 |
1.00 |
0.72 |
1 |
| 219636_s_at2
|
U133Plus2 |
1 |
1.00 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
| 219637_at2
|
U133Plus2 |
1 |
0.91 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
| 220754_at2
|
U133Plus2 |
1 |
0.55 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
| 235938_at2
|
U133Plus2 |
1 |
0.46 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
About this table
ARMC9 for expression About GeneDecksing
Data from
Genenote
(Publications) and GNF BioGPS
About these images
About these images
CGAP SAGE TAG: ACCAACACGG
SOURCE GeneReport for Unigene cluster: Hs.471610
UniProtKB/Swiss-Prot: ARMC9_HUMAN, Q7Z3E5Tissue specificity: Strongly expressed in most melanomas and melanocytes. Weakly expressed in the testis
SABiosciences Custom PCR Arrays for ARMC9
|
Orthologs
for ARMC9 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ARMC9 gene from 5/6 species (see all 6)
About this table Species with no ortholog for ARMC9
ENSEMBL Gene Tree for ARMC9 (if available) |
Paralogs
for ARMC9 gene(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| -- |
Genomic Variants
for ARMC9 gene(SNPs according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section
|
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for ARMC9
1 Indel: 45961 | | QIAGEN SeqTarget long-range PCR primers for resequencing ARMC9 |
|
Disorders & Mutations
for ARMC9 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
LSDB, HGMD, GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
ARMC9 for disorders About GeneDecksing
Human Genome Epidemiology (HuGE) Navigator: ARMC9 (3 documents)
Export disorders and mutations for ARMC9 gene to outside databases
|
Medical News
for ARMC9 gene(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications
for ARMC9 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6UniProtKB/TrEMBL, and/or
7Novoseek)
About This Section
|
10/17 PubMed articles for ARMC9 gene, integrated from 7 sources (see all 17):
(articles sorted by number of sources associating them with ARMC9)- Prediction of the coding sequences of unidentified human genes. XX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 11347906)1, 2, 3 Nagase T.... Ohara O. (2001)
- Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)1, 2 Hillier L.W....Wilson R.K. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- Tumor antigens isolated from a patient with vitiligo and T-cell- infiltrated melanoma. (PubMed id 11691810)1, 2 Kiniwa Y.... Kawakami Y. (2001)
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
- Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1 Bailey S.D....Anand S. (2010)
- Gene-centric association signals for lipids and apoli poproteins identified via the HumanCVD BeadChip. (PubMed id 19913121)1 Talmud P.J.... . (2009)
- The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
|
External Searches for ARMC9 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing ARMC9 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ARMC9 gene
(According to HUGE)
About This Section
| |
Specialized Databases showing ARMC9 gene(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for ARMC9 gene:
Search GeneIP for patents involving ARMC9
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ARMC9 gene(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or
Enzo Life Sciences)
About This Section
|
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 |  |  |  | |
| |  | Search Tocris compounds for ARMC9 |
| |  |  |  |  | | | | |
 | | | ELISAs and CLIAs for ARMC9 |
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