ATXN3 Gene
protein-coding GIFtS : 63
GC14M072705
ataxin 3 (Previous names: Machado-Joseph disease (spinocerebellar ataxia 3, olivopontocerebellar ataxia 3, autosomal dominant, ataxin 3) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: SCA3, MJD )
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Aliases & Descriptionsfor ATXN3 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions ataxin 31 2 Machado-Joseph disease protein 12 3 ATX31 2 3 olivopontocerebellar ataxia 32 SCA32 3 5 josephin2 MJD2 3 5 AT32 JOS1 2 ataxin-32 Machado-Joseph disease (spinocerebellar ataxia 3, olivopontocerebellar ataxia3, autosomal dominant, ataxin 3)1 2 OTTHUMP000002215842 Spinocerebellar ataxia type 3 protein2 3 EC 3.4.19.123 MJD12 3
Export aliases for ATXN3 gene to outside databases Previous GC identifers: GC14M091599 GC14M092524
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Summariesfor ATXN3 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for ATXN3 : Machado-Joseph disease, also known as spinocerebellar ataxia-3, is an autosomal dominant neurologic disorder. The protein encoded by this gene contains (CAG)n repeats in the coding region, and the expansion of these repeats from the normal 13-36 to 68-79 is one cause of Machado-Joseph disease. There is a negative correlation between the age of onset and CAG repeat numbers. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. (provided by RefSeq) UniProtKB/Swiss-Prot: ATX3_HUMAN, P54252 Function : Interacts with key regulators (CBP, p300 and PCAF) of transcription and represses transcription. Acts as ahistone-binding protein that regulates transcription. Acts as a deubiquitinating enzyme Gene Wiki entry for ATXN3 (Ataxin 3)
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Genomic Viewsfor ATXN3 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the ATXN3 gene promoter: p300 TBP Sp1 TFIID USF1 RP58 FOXL1 SREBP-1b SREBP-1a SREBP-1c Other transcription factors Search SABiosciences Chromatin IP Primers for ATXN3 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for ATXN3
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 14q21 Ensembl cytogenetic band: 14q32.12 HGNC cytogenetic band: 14q21 ATXN3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 14 GeneLoc Exon Structure
GeneLoc location for GC14M072705: view genomic region
(about GC identifiers )
Start:
72,705,822 bp from pter
End:
72,754,183 bp from pter
Size:
48,362 bases
Orientation:
minus strand
1 alternative location : Chr 14- 92,524,896-92,572,965
RefSeq DNA sequence: NC_000014.8 NT_026437.12
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Proteinsfor ATXN3 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: ATX3_HUMAN, P54252 (See
protein sequence )Recommended Name: Ataxin-3 Size : 364 amino acids; 41781 Da
Subunit : Interacts with DNA repair proteins RAD23A and RAD23B
Subcellular location : Nucleus matrix. Note=Predominantly nuclear, but not exclusively, inner nuclear matrix
PDB structures from and Proteopedia : 1YZB (3D)
 2AGA (3D)
 2DOS (3D)
 2JRI (3D)
 2KLZ (3D)
 
Secondary accessions : A7LFZ5 O15284 O15285 O15286 Q8N189 Q96TC3 Q96TC4 Q9H3N0Alternative splicing : 3 isoforms : P54252-1 P54252-2 P54252-3 Explore the universe of human proteins at neXtProt for ATXN3: NX_P54252 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (12 alternative transcripts):
NP_001121168.1 NP_001121169.2 NP_001158246.1 NP_001158248.1 NP_001158249.1 NP_001158250.1 NP_001158251.1 NP_001158252.1 NP_001158253.1 NP_001158254.1 NP_004984.2 NP_109376.1 ENSEMBL proteins: ENSP00000387442 ENSP00000352324 ENSP00000389376 ENSP00000376965 ENSP00000425322 ENSP00000422073 ENSP00000426697 ENSP00000352872 ENSP00000376967 ENSP00000339110 Human Recombinant Proteins 4 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
ATXN3 for ontologies About GeneDecksing Antibodies for ATXN3: Assays for ATXN3:
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Protein
Domains/ Familiesfor ATXN3 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
ATXN3 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P54252 ProtoNet protein and cluster: P54252
2 Blocks protein families : IPB003903 Ubiquitin interacting motif IPB006155 Josephin signature UniProtKB/Swiss-Prot: ATX3_HUMAN, P54252 Similarity : Contains 1 Josephin domainSimilarity : Contains 3 UIM (ubiquitin-interacting motif) repeats
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Gene Functionfor ATXN3 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: ATX3_HUMAN, P54252 Function : Interacts with key regulators (CBP, p300 and PCAF) of transcription and represses transcription. Acts as ahistone-binding protein that regulates transcription. Acts as a deubiquitinating enzyme Catalytic activity : Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by theC-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal) Enzyme Number (IUBMB): EC 3.4.19.12
4 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
About this table
ATXN3 for ontologies About GeneDecksing Animal Models: 1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Atxn3) :
ATXN3 for phenotypes About GeneDecksing
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Pathways & Interactionsfor ATXN3 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
ATXN3 for pathways About GeneDecksing 1 Millipore Pathway for ATXN3 1 Kegg Pathway (Kegg details for ATXN3) : hsa04141 Protein processing in endoplasmic reticulum
SABiosciences Pathway-Focused PCR Arrays including ATXN3 : PAHS-042A PAHS-089A SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for ATXN3 5/17 Interacting proteins for ATXN3 (ENSP00000352872 3 P54252 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 17 )About this table 5 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
About this table
ATXN3 for ontologies About GeneDecksing
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Drugs & Compoundsfor ATXN3 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
ATXN3 for compounds About GeneDecksing Browse Tocris compounds for ATXN3 4 Novoseek chemical compound relationships for ATXN3 gene
About this table
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Transcriptsfor ATXN3 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for ATXN3 gene (12 alternative transcripts): NM_001127696.1 NM_001127697.2 NM_001164774.1 NM_001164776.1 NM_001164777.1 NM_001164778.1 NM_001164779.1 NM_001164780.1 NM_001164781.1 NM_001164782.1 NM_004993.5 NM_030660.4
Additional cDNA sequence: AB050194.1 AB209309.1 AK021920.1 AK225884.1 AK307720.1 AK314919.1 BC033711.1 BC095402.1 CR602562.1 GQ176433.1 GQ176434.1 GQ176435.1 GQ176436.1 GQ176437.1 GQ176438.1 GQ176439.1 GQ176440.1 GQ176441.1 GQ176442.1 GQ176443.1 GQ176444.1 GQ176445.1 GQ176446.1 GQ176447.1 GQ176448.1 GQ176449.1 GQ176450.1 GQ176451.1 GQ176452.1 GQ176453.1 GQ176454.1 GQ176455.1 GQ176456.1 GQ176457.1 GQ176458.1 GQ176459.1 GQ176460.1 GQ176461.1 GQ176462.1 GQ176463.1 GQ176464.1 GQ176465.1 GQ176466.1 GQ176467.1 GQ176468.1 GQ176469.1 GQ176470.1 GQ176471.1 GQ176472.1 GQ176473.1 GQ176474.1 GQ176475.1 GQ176476.1 GQ176477.1 GQ176478.1 GQ176479.1 GQ176480.1 GQ176481.1 GQ176482.1 GQ176483.1 GQ176484.1 GQ176485.1 GQ176486.1 GQ176487.1 GQ176488.1 GQ176489.1 GQ176490.1 GQ176491.1 GQ176492.1 GQ176493.1 GQ176494.1 GQ176495.1 GQ176496.1 GQ176497.1 GQ176498.1 GQ176499.1 GQ176500.1 GQ176501.1 GQ176502.1 GQ176503.1 GQ176504.1 GQ176505.1 GQ176506.1 GQ176507.1 GQ176508.1 GQ176509.1 GQ176510.1 GQ176511.1 GQ176512.1 GQ176513.1 GQ176514.1 GQ176515.1 GQ176516.1 GQ176517.1 GQ176518.1 GQ176519.1 GQ176520.1 GQ176521.1 GQ176522.1 GQ176523.1 GQ176524.1 GQ176525.1 GQ176526.1 GQ176527.1 GQ176528.1 GQ176529.1 GQ176530.1 GQ176531.1 GQ176532.1 GQ176533.1 GQ176534.1 GQ176535.1 GQ176536.1 GQ176537.1 GQ176538.1 GQ176539.1 GQ176540.1 GQ176541.1 GQ176542.1 GQ176543.1 GQ176544.1 GQ176545.1 GQ176546.1 GQ176547.1 GQ176548.1 GQ176549.1 GQ176550.1 GQ176551.1 GQ176552.1 GQ176553.1 GQ176554.1 GQ176555.1 GQ176556.1 GQ176557.1 GQ176558.1 GQ176559.1 GQ176560.1 GQ176561.1 GQ176562.1 GQ176563.1 GQ176564.1 GQ176565.1 GQ176566.1 GQ176567.1 GQ176568.1 GQ176569.1 GQ176570.1 GQ176571.1 GQ176572.1 GQ176573.1 GQ176574.1 GQ176575.1 GQ176576.1 GQ176577.1 GQ176578.1 GQ176579.1 GQ176580.1 GQ176581.1 GQ176582.1 GQ176583.1 GQ176584.1 GQ176585.1 GQ176586.1 GQ176587.1 GQ176588.1 GQ176589.1 GQ176590.1 GQ176591.1 GQ176592.1 GQ176593.1 GQ176594.1 GQ176595.1 GQ176596.1 GQ176597.1 GQ176598.1 GQ176599.1 GQ176600.1 GQ176601.1 GQ176602.1 GQ176603.1 GQ176604.1 GQ176605.1 GQ176606.1 GQ176607.1 GQ176608.1 GQ176609.1 GQ176610.1 GQ176611.1 GQ176612.1 GQ176613.1 GQ176614.1 GQ176615.1 GQ176616.1 GQ176617.1 GQ176618.1 GQ176619.1 GQ176620.1 GQ176621.1 GQ176622.1 GQ176623.1 GQ176624.1 GQ176625.1 GQ176626.1 GQ176627.1 GQ176628.1 GQ176629.1 GQ176630.1 GQ176631.1 GQ176632.1 GQ176633.1 GQ176634.1 GQ176635.1 GQ176636.1 GQ176637.1 GQ176638.1 GQ176639.1 GQ176640.1 GQ176641.1 GQ176642.1 GQ176643.1 GQ176644.1 GQ176645.1 GQ176646.1 GQ176647.1 GQ176648.1 GQ176649.1 GQ176650.1 GQ176651.1 GQ176652.1 GQ176653.1 GQ176654.1 GQ176655.1 GQ176656.1 GQ176657.1 GQ176658.1 GQ176659.1 GQ176660.1 GQ176661.1 GQ176662.1 GQ176663.1 GQ176664.1 GQ176665.1 GQ176666.1 GQ176667.1 GQ176668.1 GQ176669.1 GQ176670.1 GQ176671.1 GQ176672.1 GQ176673.1 GQ176674.1 GQ176675.1 GQ176676.1 GQ176677.1 GQ176678.1 GQ176679.1 GQ176680.1 GQ176681.1 GQ176682.1 GQ176683.1 GQ176684.1 GQ176685.1 GQ176686.1 GQ176687.1 GQ176688.1 GQ176689.1 GQ176690.1 GQ176691.1 GQ176692.1 GQ176693.1 GQ176694.1 GQ176695.1 GQ176696.1 GQ176697.1 GQ176698.1 GQ176699.1 GQ176700.1 GQ176701.1 GQ176702.1 GQ176703.1 GQ176704.1 GQ176705.1 GQ176706.1 GQ176707.1 GQ176708.1 GQ176709.1 GQ176710.1 GQ176711.1 GQ176712.1 GQ176713.1 GQ176714.1 GQ176715.1 GQ176716.1 GQ176717.1 GQ176718.1 GQ176719.1 GQ176720.1 GQ176721.1 GQ176722.1 GQ176723.1 GQ176724.1 GQ176725.1 GQ176726.1 GQ176727.1 GQ176728.1 GQ176729.1 GQ176730.1 GQ176731.1 GQ176732.1 GQ176733.1 GQ176734.1 GQ176735.1 GQ176736.1 GQ176737.1 GQ176738.1 GQ176739.1 GQ176740.1 GQ176741.1 GQ176742.1 GQ176743.1 GQ176744.1 GQ176745.1 GQ176746.1 GQ176747.1 GQ176748.1 GQ176749.1 GQ176750.1 GQ176751.1 GQ176752.1 GQ176753.1 GQ176754.1 GQ176755.1 GQ176756.1 GQ176757.1 GQ176758.1 GQ176759.1 GQ176760.1 GQ176761.1 GQ176762.1 GQ176763.1 GQ176764.1 GQ176765.1 GQ176766.1 GQ176767.1 GQ176768.1 GQ176769.1 GQ176770.1 GQ176771.1 GQ176772.1 GQ176773.1 GQ176774.1 GQ176775.1 GQ176776.1 GQ176777.1 GQ176778.1 GQ176779.1 GQ176780.1 GQ176781.1 GQ176782.1 GQ176783.1 GQ176784.1 GQ176785.1 GQ176786.1 GQ176787.1 GQ176788.1 GQ176789.1 GQ176790.1 GQ176791.1 GQ176792.1 GQ176793.1 GQ176794.1 GQ176795.1 GQ176796.1 GQ176797.1 GQ176798.1 GQ176799.1 GQ176800.1 GQ176801.1 GQ176802.1 GQ176803.1 GQ176804.1 GQ176805.1 GQ176806.1 GQ176807.1 GQ176808.1 GQ176809.1 GQ176810.1 GQ176811.1 GQ176812.1 GQ176813.1 GQ176814.1 GQ176815.1 GQ176816.1 GQ176817.1 GQ176818.1 GQ176819.1 GQ176820.1 GQ176821.1 GQ176822.1 GQ176823.1 GQ176824.1 GQ176825.1 GQ176826.1 GQ176827.1 GQ176828.1 GQ176829.1 GQ176830.1 GQ176831.1 GQ176832.1 GQ176833.1 GQ176834.1 GQ176835.1 GQ176836.1 GQ176837.1 GQ176838.1 GQ176839.1 GQ176840.1 GQ176841.1 GQ176842.1 GQ176843.1 GQ176844.1 GQ176845.1 GQ176846.1 GQ176847.1 S75313.1 U63332.1 U64820.1 U64822.1
19 DOTS entries : DT.425017 DT.443649 DT.87015142 DT.100891031 DT.456211 DT.92425329 DT.92425333 DT.100726270
DT.204093 DT.91732227 DT.95161774 DT.95258069 DT.95261469 DT.100009304 DT.100041932 DT.100009305 DT.92425330 DT.100671959 DT.75139018 24/117 AceView cDNA sequences (see all 117 ):
BX439196 AB050194 BU153544 BU190081 BE018570 BU663113 AI292001 AA737644 AA905251 BU684328 NM_030660 AA768286 AA961624 BQ775895 BC022245 NM_004993 AA677999 AA352543 D20589 CA425099 CR602562 CD367728 AK021920 AL709144
highest scoring ESTs for ATXN3 :U64820 AB050194 AL709144 BC022245 BC033711 BG434106 BG939925 BM848444 BM851671 BQ269281 Unigene Cluster for ATXN3:
Ataxin 3 Hs.532632 [show with all ESTs ] Unigene Representative Sequence: NM_004993 GeneLoc Exon Structure 5/10 Alternative Splicing Database (ASD) splice patterns (SP) for ATXN3 (see all 10 ) ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b · 10c ^ 11a · 11b SP1 :         -     -     -   -                   SP2 :         -   -   -     -   -                   SP3 :   -   -     -     -     -   -                   SP4 :       -   -     -     -   -                   SP5 :       -   -   -   -   -   -   -                  
About this scheme ECgene alternative splicing isoforms for ATXN3 16 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000506845 ENST00000447800 ENST00000359366 ENST00000429774 ENST00000507965 ENST00000506466 ENST00000393287 ENST00000502250 ENST00000454964 ENST00000515746 ENST00000503767 ENST00000359819 (uc001yac.3 uc010aug.2 uc001yad.3 uc010auh.2 uc001yae.3 uc010twl.1 )ENST00000393289 ENST00000504047 ENST00000511362 ENST00000340660
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Expression for ATXN3 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section ATXN3 expression in normal and diseased human tissues 1 / 2 / 3
13 probe-sets matching ATXN3 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
36819_at2 , 3
U95-A
1
1.00
1.00
0.77
0.52
U64820
1.00
1.00
1.00
1
82526_at2 , 3
U95-E
1
0.88
1.00
0.79
0.65
AW001014
0.60
1.00
0.82
1
56787_at2 , 3
U95-C
1
0.81
1.00
0.92
0.95
W72774
0.20
1.00
0.72
1
60073_f_at2
U95-C
1872
0.69
0.00
0.39
1.89
--
--
--
--
--
36820_r_at2 , 3
U95-A
1
0.44
1.00
-0.21
0.22
S75313
0.80
1.00
0.91
1
205415_s_at2 , 3
U133-A
1
1.00
1.00
--
--
AI888099
0.40
1.00
0.76
1
205416_s_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_004993
0.60
1.00
0.82
1
238723_at2 , 3
U133-B
1
0.91
1.00
--
--
AW083849
0.40
1.00
0.76
1
235240_at2 , 3
U133-B
1
0.82
1.00
--
--
N51479
0.20
1.00
0.72
1
205415_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
205416_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
238723_at2
U133Plus2
1
0.91
1.00
--
--
--
--
--
--
--
235240_at2
U133Plus2
1
0.82
1.00
--
--
--
--
--
--
--
About this table
ATXN3 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ATACAAGTGC SOURCE GeneReport for Unigene cluster: Hs.532632 UniProtKB/Swiss-Prot: ATX3_HUMAN, P54252 Tissue specificity : Ubiquitous
SABiosciences Expression via Pathway-Focused PCR Arrays including ATXN3 : PAHS-042A PAHS-089A
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Orthologsfor ATXN3 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for ATXN3 gene from 5/12 species (see all 12 )
About this table Species with no ortholog for ATXN3 ENSEMBL Gene Tree for ATXN3 (if available)
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Paralogsfor ATXN3 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for ATXN3 gene ATXN3L 2
ATXN3 for paralogs About GeneDecksing
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Genomic Variantsfor ATXN3 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section UniProtKB/Swiss-Prot: ATX3_HUMAN, P54252 Polymorphism : The poly-Gln region of ATXN3 is highly polymorphic (14 to 41 repeats) in the normal population and isexpanded to about 55-82 repeats in spinocerebellar ataxia 3 (SCA3) patients Polymorphism : The MJD1a allele carries a single nucleotide substitution in codon 349 generating a stop codon instead ofa Tyr. In the Japanese population, the MJD1a allele seems to be significantly associated with Gln expansion
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 14 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for ATXN3 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for ATXN3: --
QIAGEN SeqTarget long-range PCR primers for resequencing ATXN3
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Disorders & Mutationsfor ATXN3 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
ATXN3 for disorders About GeneDecksing
OMIM: 607047 disorders : 109150 UniProtKB/Swiss-Prot: ATX3_HUMAN, P54252
Defects in ATXN3 are the cause of spinocerebellar ataxia type 3 (SCA3) [MIM:109150]; also known as Machado-Joseph disease (MJD). Spinocerebellar ataxia is a clinically and genetically heterogeneous group of cerebellar disorders. Patients show progressive incoordination of gait and often poor coordination of hands, speech and eye movements, due to degeneration of the cerebellum with variable involvement of the brainstem and spinal cord. SCA3 belongs to the autosomal dominant cerebellar ataxias type I (ADCA I) which are characterized by cerebellar ataxia in combination with additional clinical features like optic atrophy, ophthalmoplegia, bulbar and extrapyramidal signs, peripheral neuropathy and dementia. The molecular defect in SCA3 is the a CAG repeat expansion in ATXN3 coding region. Longer expansions result in earlier onset and more severe clinical manifestations of the disease
10/25 Novoseek disease relationships for ATXN3 gene (see all 25 )
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
machado-joseph disease
98.7
137
10465503 (2), 11446399 (2), 8528200 (2), 8800925 (1) (see all 84 )
spinocerebellar ataxias
90.7
20
15140190 (2), 7655453 (1), 15316156 (1), 16791428 (1) (see all 14 )
drpla
84.5
18
17650485 (2), 19235102 (2), 10453742 (2), 9613852 (2) (see all 12 )
spinocerebellar degenerations
83.7
7
17696782 (1), 17983597 (1), 12857950 (1), 12938149 (1) (see all 5 )
neurodegenerative diseases
81.9
46
14659761 (2), 12857950 (2), 8800925 (1), 8659514 (1) (see all 33 )
sca12
76
5
19235102 (2), 11914409 (1), 17420317 (1)
sca17
76
5
17650485 (2), 19235102 (1), 17420317 (1)
spinocerebellar ataxia type 2
75.1
4
19672991 (1), 15265035 (1), 17440947 (1)
facial myokymia
69.4
1
9562258 (1)
ataxias hereditary
66.5
2
18042234 (1), 17420317 (1)
About this table GeneTests: ATXN3 Spinocerebellar Ataxia Type 3 Human Gene Mutation Database (HGMD) : ATXN3 Genetic Association Database (GAD): ATXN3 Human Genome Epidemiology (HuGE) Navigator: ATXN3 (20 documents) Export disorders and mutations for ATXN3 gene to outside databases
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Medical Newsfor ATXN3 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Publicationsfor ATXN3 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/254 PubMed articles for ATXN3 gene, integrated from 7 sources (see all 254 ): (articles sorted by number of sources associating them with ATXN3) Structural modeling of ataxin-3 reveals distant homology to adaptins. (PubMed id 12486728) 1 , 2 , 7 Albrecht M....Lengauer T. (2003) Deubiquitinating function of ataxin-3: insights from the solution structure of the Josephin domain. (PubMed id 16118278) 1 , 2 , 7 Mao Y....De Camilli P. (2005) Identification of three novel polymorphisms in the MJD1 gene and study of their frequency in the Portuguese population. (PubMed id 12166658) 1 , 4, 7 Costa M.d.o. .C....Maciel P. (2002) Ataxin-3 is a histone-binding protein with two independent transcriptional corepressor activities. (PubMed id 12297501) 1 , 2 , 7 Li F.... Chakravarti D. (2002) Ataxin-3 is transported into the nucleus and associates with the nuclear matrix. (PubMed id 9580663) 1 , 2 , 7 Tait D.... Wanker E.E. (1998) Machado-Joseph disease gene products carrying different carboxyl termini. (PubMed id 9274833) 1 , 2 , 7 Goto J.... Kanazawa I. (1997) CAG repeats in Restless Legs syndrome. (PubMed id 16389595) 1 , 4 Konieczny M....Schols L. (2006) Impact of presymptomatic genetic testing for hereditary ataxia and neuromuscular disorders. (PubMed id 15210524) 1 , 4 Smith C.O....Bird T.D. (2004) Genetic testing in spinocerebellar ataxia in Taiwan: expansions of trinucleotide repeats in SCA8 and SCA17 are associated with typical Parkinson's disease. (PubMed id 14756671) 1 , 4 Wu Y.R....Lee-Chen G.J. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004)
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
External Searches for ATXN3 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Genome Databases showing ATXN3 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Other Databases showing ATXN3 gene
(According to HUGE )
About This Section --
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Specialized Databases showing ATXN3 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
ATLAS Chromosomes in Cancer entry for ATXN3 Genetics and Cytogenetics in Oncology and Haematology NIEHS-SNPs http://egp.gs.washington.edu/data/atxn3/ GeneReviews http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/ATXN3
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
About This Section Patent Information for ATXN3 gene: Search GeneIP for patents involving ATXN3 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
Jump to Section...
Aliases
Databases
Disorders
Domains/Families
Drugs/Compounds
Expression
Function
Genomic Views
Intellectual Property
Medical News
Orthologs
Paralogs
Pathways/Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Productsfor ATXN3 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for ATXN3
Recombinant Protein for ATXN3
ELISAs and CLIAs for ATXN3
Jump to Section...
Aliases for ATXN3
Databases for ATXN3
Disorders for ATXN3
Domains/Families for ATXN3
Drugs/Compounds for ATXN3
Expression for ATXN3
Function for ATXN3
Genomic Views for ATXN3
Intellectual Property for ATXN3
Medical News for ATXN3
Orthologs for ATXN3
Paralogs for ATXN3
Pathways/Interactions for ATXN3
Products for ATXN3
Proteins for ATXN3
Publications for ATXN3
Search Box for ATXN3
Summaries for ATXN3
Transcripts for ATXN3
Variants for ATXN3
TOP
BOTTOM