Aliases &
Descriptions
for C16orf46 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
About This Section
|
| Aliases & Descriptions |
|---|
| chromosome 16 open reading frame 461 2 | | FLJ327021 2 | | OTTHUMP000001749762 |
Export aliases for C16orf46 gene to outside databasesPrevious GC identifers: GC16M079653 GC16M081087 |
Summaries
for C16orf46 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for C16orf46 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60),
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences)
About This Section
|
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the C16orf46 gene promoter:
Pax-6 PPAR-gamma1 PPAR-gamma2 ATF-2 ARP-1 FOXO1a USF1 FOXO4 deltaCREB CREB
Other transcription factors
Search SABiosciences Chromatin IP Primers for C16orf46
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for C16orf46  |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 16q23.2 Ensembl cytogenetic band: 16q23.2 HGNC cytogenetic band: 16q23.2C16orf46 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome 16 GeneLoc Exon Structure GeneLoc location for GC16M066843: view genomic region
(about GC identifiers)
Start:
|
66,843,908 bp from pter |
End:
|
66,867,687 bp from pter |
Size:
|
23,780 bases |
Orientation:
|
minus strand |
1 alternative location:
| Chr16- 81,087,102-81,110,872 |
RefSeq DNA sequence:- NC_000016.9 NT_010498.15
|
Proteins
for C16orf46 gene
(According to
1UniProtKB,
neXtProt,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological, and/or
ProSpec,
Biochemical Assays by
Millipore,
Sigma-Aldrich,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene,
Antibodies by
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals, and/or
Epitomics)
About This Section
|
UniProtKB/Swiss-Prot: CP046_HUMAN, Q6P387 (See
protein sequence)Recommended Name: Uncharacterized protein C16orf46 Size: 395 amino acids; 43418 Da
Secondary accessions: Q96MA7Alternative splicing: 2 isoforms: Q6P387-1 Q6P387-2 Explore the universe of human proteins at neXtProt for C16orf46: NX_Q6P387
Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins (2 alternative transcripts):
NP_001094343.1 NP_689550.2
ENSEMBL proteins: ENSP00000367874 ENSP00000377000 ENSP00000299578 ENSP00000398751
Human Recombinant Proteins
Antibodies for C16orf46:
Assays for C16orf46: |
Protein
Domains/
Families
for C16orf46 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q6P387 |
Gene Function
for C16orf46 gene
(According to UniProtKB,
IUBMB,and/or
Genatlas, Animal models from MGI Dec 24 2010,
shRNA from
OriGene,
Sigma-Aldrich,
RNAi from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Clones from Millipore,
Sigma-Aldrich,
OriGene,
GenScript,
Sino Biological,
Cell Lines from GenScript,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene.)
About This Section
|
|
Pathways & Interactions
for C16orf46 gene
(Pathways according to
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
PCR Arrays from
SABiosciences,
Proteins Network according to
SABiosciences,
Sigma-Aldrich,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene).
About This Section
|
SABiosciences Custom Pathway-Focused PCR Arrays for C16orf46
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C16orf46
|
Drugs & Compounds
for C16orf46 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for C16orf46
|
Transcripts
for C16orf46 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Tagged/untagged cDNA clones from
OriGene,
Sigma-Aldrich,
GenScript,
Primers from
OriGene and/or
SABiosciences)
About This Section
|
REFSEQ mRNAs for C16orf46 gene (2 alternative transcripts): NM_001100873.1 NM_152337.2 Additional cDNA sequence: AK057264.1 AK128467.1 AK295411.1 BC064143.1 7 DOTS entries: DT.99944493 DT.40229554 DT.100775253 DT.99990752 DT.92009263 DT.40268560 DT.95272855 24/237 AceView cDNA sequences (see all 237): BG576993 CR606547 CR603013 AA307978 N63246 CR601763 AY533031 AW194585 AA304964 CA777840 CR603107 BI091245 BI093591 BX111930 BI094355 BM756167 NM_004483 AI432670 AA905107 N72768 BF448093 BG528603 AI650884 BC000790
 highest scoring ESTs for C16orf46:AK057264 BC064143 CD358187 CR739048 DA346278 DA364772 DA525473 DA689035 DA692014 DB009783 Unigene Cluster for C16orf46: Chromosome 16 open reading frame 46 Hs.658684 [show with all ESTs]Unigene Representative Sequence: AK128467
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for C16orf46
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | ^ | 5 |
|---|
|
| SP1: | | | | | - | | | | | | | | | | |
| SP2: | | | | | | | | | | | | | | | |
| SP3: | | | | | - | | - | | - | | - | | | |
About this scheme
ECgene alternative splicing isoforms for C16orf46
4 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000378611(uc010chf.2) ENST00000393327 ENST00000299578(uc002fgc.3 uc010vno.1)
ENST00000444657
|
Expression
for C16orf46 gene
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Primers from
OriGene and/or
SABiosciences
)
About This Section
| C16orf46 expression in normal and diseased human tissues
1 / 2 / 3 4 probe-sets matching C16orf46 gene
Affymetrix
probe-set |
Array |
GeneAnnot data |
GeneNote data |
GeneTide data |
| # genes |
Sensitivity |
Specificity |
Correlation |
Length |
Gb_Accession |
Consensus |
Uniqueness |
Score |
Rank |
| 48247_at2, 3
|
U95-B |
1 |
0.56 |
1.00 |
1.00 |
1.00 |
AI921002 |
0.60 |
0.83 |
0.73 |
1 |
| 230281_at2, 3
|
U133-B |
1 |
0.64 |
1.00 |
-- |
-- |
AI921002 |
0.60 |
0.83 |
0.73 |
1 |
| 1553303_at2
|
U133Plus2 |
1 |
0.91 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
| 230281_at2
|
U133Plus2 |
1 |
0.64 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
About this table
C16orf46 for expression About GeneDecksing
Data from
Genenote
(Publications) and GNF BioGPS
About these images
About these images
CGAP SAGE TAG: TTCTCCCAAA
SOURCE GeneReport for Unigene cluster: Hs.658684
SABiosciences Custom PCR Arrays for C16orf46
|
Orthologs
for C16orf46 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for C16orf46 gene from 3 species
About this table Species with no ortholog for C16orf46
ENSEMBL Gene Tree for C16orf46 (if available) |
Paralogs
for C16orf46 gene(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| -- |
Genomic Variants
for C16orf46 gene(SNPs according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Chr 16 pos | Sequence | Recs | AA
Chg | Type | More | Recs | Allele
freq | Pop | Total
sample | More |
|---|
About this tableHapMap Linkage Disequilibrium images for C16orf46 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 3 variations for C16orf46
3 CNVs: 8830 53839 5331 | | QIAGEN SeqTarget long-range PCR primers for resequencing C16orf46 |
|
Disorders & Mutations
for C16orf46 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
LSDB, HGMD, GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
C16orf46 for disorders About GeneDecksing
Human Genome Epidemiology (HuGE) Navigator: C16orf46 (1 document)
Export disorders and mutations for C16orf46 gene to outside databases
|
Medical News
for C16orf46 gene(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications
for C16orf46 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6UniProtKB/TrEMBL, and/or
7Novoseek)
About This Section
|
6 PubMed articles for C16orf46 gene integrated from 7 sources:
(articles sorted by number of sources associating them with C16orf46)- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
- Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study. (PubMed id 18951430)1 Anney R.J....Gill M. (2008)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for C16orf46 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing C16orf46 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing C16orf46 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing C16orf46 gene(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for C16orf46 gene:
Search GeneIP for patents involving C16orf46
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for C16orf46 gene(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or
Enzo Life Sciences)
About This Section
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