Aliases &
Descriptions
for C19orf30 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
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|
| Aliases & Descriptions |
|---|
| chromosome 19 open reading frame 301 2 | | PGSF11 2 | | PGSF1a1 | | PGSF1b1 |
Export aliases for C19orf30 gene to outside databasesPrevious GC identifers: GC19P004721 GC19P004722 |
Summaries
for C19orf30 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
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|
-- |
Genomic Views
for C19orf30 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60),
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences)
About This Section
|
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the C19orf30 gene promoter:
p53 RFX1 ATF-2 HNF-4alpha2 Nkx6-1 Cart-1 ITF-2 Tal-1beta E47 Tal-1
Other transcription factors
Search SABiosciences Chromatin IP Primers for C19orf30
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays  |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 19p13.3 Ensembl cytogenetic band: 19p13.3 HGNC cytogenetic band: 19p13.3C19orf30 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19P004531: view genomic region
(about GC identifiers)
Start:
|
4,531,148 bp from pter |
End:
|
4,534,598 bp from pter |
Size:
|
3,451 bases |
Orientation:
|
plus strand |
1 alternative location:
| Chr19+ 4,769,152-4,772,545 |
RefSeq DNA sequence:- NC_000019.9 NT_011255.14
|
Proteins
for C19orf30 gene
(According to
1UniProtKB,
neXtProt,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological, and/or
ProSpec,
Biochemical Assays by
Millipore,
Sigma-Aldrich,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene,
Antibodies by
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals, and/or
Epitomics)
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|
UniProtKB/Swiss-Prot: PGSF1_HUMAN, Q8N6C7 (See
protein sequence)Recommended Name: Pituitary gland-specific factor 1 Size: 128 amino acids; 14321 Da
Secondary accessions: Q17RJ9 Q8N6C6Alternative splicing: 2 isoforms: Q8N6C7-1 Q8N6C7-2 Explore the universe of human proteins at neXtProt for C19orf30: NX_Q8N6C7
Human Recombinant Proteins
Antibodies for C19orf30:
Assays for C19orf30: |
Protein
Domains/
Families
for C19orf30 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q8N6C7 |
Gene Function
for C19orf30 gene
(According to UniProtKB,
IUBMB,and/or
Genatlas, Animal models from MGI Dec 24 2010,
shRNA from
OriGene,
Sigma-Aldrich,
RNAi from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Clones from Millipore,
Sigma-Aldrich,
OriGene,
GenScript,
Sino Biological,
Cell Lines from GenScript,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene.)
About This Section
|
|
Pathways & Interactions
for C19orf30 gene
(Pathways according to
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
PCR Arrays from
SABiosciences,
Proteins Network according to
SABiosciences,
Sigma-Aldrich,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene).
About This Section
|
SABiosciences Custom Pathway-Focused PCR Arrays for C19orf30
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C19orf30
|
Drugs & Compounds
for C19orf30 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for C19orf30
|
Transcripts
for C19orf30 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Tagged/untagged cDNA clones from
OriGene,
Sigma-Aldrich,
GenScript,
Primers from
OriGene and/or
SABiosciences)
About This Section
|
Additional cDNA sequence: AB058892.2 BC090884.1 BC117294.1 BC117296.1 BC143983.1 6 DOTS entries: DT.75101919 DT.100779671 DT.99976914 DT.100736049 DT.121487798 DT.91736370 24/44 AceView cDNA sequences (see all 44): BE220327 AA977000 AA976576 AI733168 AI703043 AI281968 BE550197 AI288709 AW205881 AW135146 AA988634 BX096907 AI680964 AI700564 CD242311 BE045552 AB058893 CD109008 CD106009 BE503154 CD251059 BE671262 AI824340 AB058892
 highest scoring ESTs for C19orf30:AI700564 CD106009 AB058892 AB058893 AI680964 AI703043 AI824340 AW205881 BE045552 BE220327 Unigene Cluster for C19orf30: Chromosome 19 open reading frame 30 Hs.326728 [show with all ESTs]Unigene Representative Sequence: BE779752
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for C19orf30 (see all 7)
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2a | · | 2b | · | 2c | ^ | 3a | · | 3b | ^ | 4a | · | 4b | ^ | 5a | · | 5b | ^ | 6a | · | 6b | · | 6c | · | 6d | · | 6e |
|---|
|
| SP1: | | | | | | | - | | - | | | | | | | | | | | | | | | | - | | | | | | | | | | |
| SP2: | | | | | | | - | | | | | | - | | | | | | | | - | | - | | - | | | | | | | | | | |
| SP3: | | | | | | | - | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP4: | | | | | | | | | | | | | | | | | | | | | - | | | | - | | | | | | | | | | |
| SP5: | | | | | | | - | | | | | | - | | - | | - | | - | | - | | - | | - | | | | | | | | | |
About this scheme
ECgene alternative splicing isoforms for C19orf30
1 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000317292(uc002mbd.2 uc002mbe.2 uc010xii.1)
|
Expression
for C19orf30 gene
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Primers from
OriGene and/or
SABiosciences
)
About This Section
| C19orf30 expression in normal and diseased human tissues
1 / 2 / 3 6 probe-sets matching C19orf30 gene
Affymetrix
probe-set |
Array |
GeneAnnot data |
GeneNote data |
GeneTide data |
| # genes |
Sensitivity |
Specificity |
Correlation |
Length |
Gb_Accession |
Consensus |
Uniqueness |
Score |
Rank |
| 76554_g_at2, 3
|
U95-E |
1 |
1.00 |
1.00 |
0.94 |
1.06 |
AI700564 |
1.00 |
0.90 |
0.95 |
1 |
| 76552_at2, 3
|
U95-E |
1 |
1.00 |
1.00 |
0.90 |
0.96 |
AI700564 |
1.00 |
0.90 |
0.95 |
1 |
| 223913_s_at2, 3
|
U133-B |
1 |
1.00 |
1.00 |
-- |
-- |
AB058892 |
0.80 |
0.88 |
0.84 |
1 |
| 223973_at2, 3
|
U133-B |
1 |
0.36 |
1.00 |
-- |
-- |
AB058893 |
0.80 |
0.88 |
0.84 |
1 |
| 223913_s_at2
|
U133Plus2 |
1 |
1.00 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
| 223973_at2
|
U133Plus2 |
1 |
0.36 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
About this table
C19orf30 for expression About GeneDecksing
Data from
Genenote
(Publications) and GNF BioGPS
About these images
About these images
CGAP SAGE TAG: TGTTGAATCA
SOURCE GeneReport for Unigene cluster: Hs.326728
UniProtKB/Swiss-Prot: PGSF1_HUMAN, Q8N6C7Tissue specificity: High expression in pituitary gland and weak in pancreas
SABiosciences Custom PCR Arrays for C19orf30
|
Orthologs
for C19orf30 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
| ENSEMBL Gene Tree for C19orf30 (if available) |
Paralogs
for C19orf30 gene(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| -- |
Genomic Variants
for C19orf30 gene(SNPs according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section
| |
Disorders & Mutations
for C19orf30 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
LSDB, HGMD, GAD,
HuGE Navigator,
and/or TGDB.)
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| -- |
Medical News
for C19orf30 gene(Possibly Related Articles in
Doctor's Guide)
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| -- |
Publications
for C19orf30 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6UniProtKB/TrEMBL, and/or
7Novoseek)
About This Section
|
6 PubMed articles for C19orf30 gene integrated from 7 sources:
(articles sorted by number of sources associating them with C19orf30)- Expression profile of active genes in the human pituitary gland. (PubMed id 11854097)1, 2, 3, 7 Tanaka S....Amino N. (2002)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
- The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)2 Grimwood J.... Lucas S.M. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- Maternal zinc deficiency raises plasma prolactin levels in lactating rats. (PubMed id 15173390)7 Chowanadisai W....Lonnerdal B. (2004)
|
External Searches for C19orf30 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
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Genome Databases showing C19orf30 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing C19orf30 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing C19orf30 gene(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for C19orf30 gene:
Search GeneIP for patents involving C19orf30
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for C19orf30 gene(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or
Enzo Life Sciences)
About This Section
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