Aliases &
Descriptions
for C1QTNF9 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
About This Section
|
| Aliases & Descriptions |
|---|
| C1q and tumor necrosis factor related protein 91 2 | | AQL11 2 | | C1QTNF9A1 2 3 | | Complement C1q tumor necrosis factor-related protein 92 3 | | CTRP91 2 | | complement C1q tumor necrosis factor-related protein 9A2 | | MGC489151 2 | | OTTHUMP000000181252 |
Export aliases for C1QTNF9 gene to outside databasesPrevious GC identifers: GC13P023779 GC13P024881 |
Summaries
for C1QTNF9 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
UniProtKB/Swiss-Prot: C1T9A_HUMAN, P0C862Function: Probable adipokine. Activates AMPK, AKT, and p44/42 MAPK signaling pathways (By similarity)
|
Genomic Views
for C1QTNF9 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60),
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences)
About This Section
|
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the C1QTNF9 gene promoter:
CUTL1 ER-alpha SREBP-1b SREBP-1a SREBP-1c POU2F1 E47 E2F-1 E2F NRSF form 2
Other transcription factors
Search SABiosciences Chromatin IP Primers for C1QTNF9
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for C1QTNF9  |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 13q12.12 Ensembl cytogenetic band: 13q12.12 HGNC cytogenetic band: 13q12.12C1QTNF9 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome 13 GeneLoc Exon Structure GeneLoc location for GC13P005695: view genomic region
(about GC identifiers)
Start:
|
5,695,414 bp from pter |
End:
|
5,708,613 bp from pter |
Size:
|
13,200 bases |
Orientation:
|
plus strand |
1 alternative location:
| Chr13+ 24,881,304-24,896,673 |
RefSeq DNA sequence:- NC_000013.10 NT_024524.14
|
Proteins
for C1QTNF9 gene
(According to
1UniProtKB,
neXtProt,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological, and/or
ProSpec,
Biochemical Assays by
Millipore,
Sigma-Aldrich,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene,
Antibodies by
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals, and/or
Epitomics)
About This Section
|
UniProtKB/Swiss-Prot: C1T9A_HUMAN, P0C862 (See
protein sequence)Recommended Name: Complement C1q tumor necrosis factor-related protein 9A precursor Size: 333 amino acids; 34681 Da
Subunit: Multimers (predominantly trimers). Interacts with ADIPOQ via the C1q domain to form a heterotrimeric complex(By similarity). Interacts with CTRP9B. Forms heterotrimers and heterooligomeric complexes with CTRP9B
Subcellular location: Secreted (By similarity)
Secondary accessions: A2A3T6 Q0VGC5 Q5VX65 Q5VX66 Q8IUU4Explore the universe of human proteins at neXtProt for C1QTNF9: NX_P0C862
REFSEQ proteins: NP_848635.2
ENSEMBL proteins: ENSP00000371498 ENSP00000333737 ENSP00000371503
Human Recombinant Proteins
1 Gene Ontology (GO) cellular component term (GO ID links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005576 | extracellular region |
IEA | -- |
About this table
C1QTNF9 for ontologies About GeneDecksing
Antibodies for C1QTNF9:
Assays for C1QTNF9: |
Protein
Domains/
Families
for C1QTNF9 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
C1QTNF9 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry P0C862ProtoNet protein and cluster: P0C862 UniProtKB/Swiss-Prot: C1T9A_HUMAN, P0C862Similarity: Contains 1 C1q domainSimilarity: Contains 3 collagen-like domains |
Gene Function
for C1QTNF9 gene
(According to UniProtKB,
IUBMB,and/or
Genatlas, Animal models from MGI Dec 24 2010,
shRNA from
OriGene,
Sigma-Aldrich,
RNAi from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Clones from Millipore,
Sigma-Aldrich,
OriGene,
GenScript,
Sino Biological,
Cell Lines from GenScript,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene.)
About This Section
|
UniProtKB/Swiss-Prot: C1T9A_HUMAN, P0C862Function: Probable adipokine. Activates AMPK, AKT, and p44/42 MAPK signaling pathways (By similarity)
2 Gene Ontology (GO) molecular function terms (GO ID links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005179 | hormone activity |
IEA | -- | | GO:0005515 | protein binding |
IEA | -- |
About this table
C1QTNF9 for ontologies About GeneDecksing
|
Pathways & Interactions
for C1QTNF9 gene
(Pathways according to
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
PCR Arrays from
SABiosciences,
Proteins Network according to
SABiosciences,
Sigma-Aldrich,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene).
About This Section
|
SABiosciences Custom Pathway-Focused PCR Arrays for C1QTNF9
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C1QTNF9
|
Drugs & Compounds
for C1QTNF9 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for C1QTNF9
|
Transcripts
for C1QTNF9 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Tagged/untagged cDNA clones from
OriGene,
Sigma-Aldrich,
GenScript,
Primers from
OriGene and/or
SABiosciences)
About This Section
|
REFSEQ mRNAs for C1QTNF9 gene: NM_178540.3 Additional cDNA sequence: AY358145.1 BC040438.1 1 DOTS entry: DT.95304754 24/228 AceView cDNA sequences (see all 228): AK123225 AL707817 BQ717547 CD723650 BE735417 AW206404 AK092759 AK055770 AA360954 BX644087 CD678459 BE502293 AL699742 AA253426 AK097217 R78453 CK905109 D79329 BM728412 CB215619 BX283763 AA159751 AI435823 AA007146
 highest scoring ESTs for C1QTNF9:AY358145 BC040438 BI833629 BQ023266 NM_178540 AW983590 DB520946 XM_370715 CA425716 AW983589 Unigene Cluster for C1QTNF9: C1q and tumor necrosis factor related protein 9 Hs.362854 [show with all ESTs]Unigene Representative Sequence: NM_178540
GeneLoc Exon Structure
3 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000382066 ENST00000332018(uc001upj.2) ENST00000382071
|
Expression
for C1QTNF9 gene
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Primers from
OriGene and/or
SABiosciences
)
About This Section
| C1QTNF9 expression in normal and diseased human tissues
1 / 2 / 3 1 probe-set matching C1QTNF9 gene
Affymetrix
probe-set |
Array |
GeneAnnot data |
GeneNote data |
GeneTide data |
| # genes |
Sensitivity |
Specificity |
Correlation |
Length |
Gb_Accession |
Consensus |
Uniqueness |
Score |
Rank |
| 1554233_at2
|
U133Plus2 |
1 |
0.64 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
About this table
Data from
Genenote
(Publications) and GNF BioGPS
About these images
About these images
CGAP SAGE TAG: CATTAGCTAT
SOURCE GeneReport for Unigene cluster: Hs.362854
UniProtKB/Swiss-Prot: C1T9A_HUMAN, P0C862Tissue specificity: Expressed predominantly in adipose tissue
SABiosciences Custom PCR Arrays for C1QTNF9
|
Orthologs
for C1QTNF9 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for C1QTNF9 gene from 5/7 species (see all 7)
About this table Species with no ortholog for C1QTNF9
ENSEMBL Gene Tree for C1QTNF9 (if available) |
Paralogs
for C1QTNF9 gene(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| Paralogs for C1QTNF9 gene
- C1QB2 COL10A12 C1QTNF9B2 COL8A22 COL8A12 C1QTNF72 C1QC2 C1QTNF22
- ADIPOQ2
C1QTNF9 for paralogs About GeneDecksing
|
Genomic Variants
for C1QTNF9 gene(SNPs according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Chr 13 pos | Sequence | Recs | AA
Chg | Type | More | Recs | Allele
freq | Pop | Total
sample | More |
|---|
About this tableHapMap Linkage Disequilibrium images for C1QTNF9 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 4 variations for C1QTNF9
4 CNVs: 8747 5317 5315 9216 | | QIAGEN SeqTarget long-range PCR primers for resequencing C1QTNF9 |
|
Disorders & Mutations
for C1QTNF9 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
LSDB, HGMD, GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Medical News
for C1QTNF9 gene(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications
for C1QTNF9 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6UniProtKB/TrEMBL, and/or
7Novoseek)
About This Section
|
7 PubMed articles for C1QTNF9 gene integrated from 7 sources:
(articles sorted by number of sources associating them with C1QTNF9)- The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2, 3 Clark H.F.... Gray A.M. (2003)
- Identification and characterization of CTRP9, a novel secreted glycoprotein, from adipose tissue that reduces serum glucose in mice and forms heterotrimers with adiponectin. (PubMed id 18787108)1, 3 Wong G.W....Lodish H.F. (2009)
- CTRP8 and CTRP9B are novel proteins that hetero-oligo merize with C1q/TNF family members. (PubMed id 19666007)2 Peterson J.M....Wong G.W. (2009)
- hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)
- The DNA sequence and analysis of human chromosome 13. (PubMed id 15057823)2 Dunham A.... Ross M.T. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for C1QTNF9 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing C1QTNF9 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing C1QTNF9 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing C1QTNF9 gene(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for C1QTNF9 gene:
Search GeneIP for patents involving C1QTNF9
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for C1QTNF9 gene(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or
Enzo Life Sciences)
About This Section
|
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