Aliases &
Descriptions
for C1orf101 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
About This Section
|
| Aliases & Descriptions |
|---|
| chromosome 1 open reading frame 1011 2 | | MGC333701 2 | | OTTHUMP000000379862 | | hypothetical protein LOC2570442 | | RP11-523K4.12 |
Export aliases for C1orf101 gene to outside databasesPrevious GC identifers: GC01P240951 GC01P242691 GC01P244618 |
Summaries
for C1orf101 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for C1orf101 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60),
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences)
About This Section
|
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the C1orf101 gene promoter:
STAT3 MEF-2A CHOP-10 C/EBPalpha Max1 Max c-Myc SREBP-1c E4BP4 SREBP-1b
Other transcription factors
Search SABiosciences Chromatin IP Primers for C1orf101
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for C1orf101  |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 1q44 Ensembl cytogenetic band: 1q44 HGNC cytogenetic band: 1q44C1orf101 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01P215007: view genomic region
(about GC identifiers)
Start:
|
215,007,857 bp from pter |
End:
|
215,186,865 bp from pter |
Size:
|
179,009 bases |
Orientation:
|
plus strand |
1 alternative location:
| Chr1+ 244,617,679-244,804,479 |
RefSeq DNA sequence:- NC_000001.10 NT_167186.1
|
Proteins
for C1orf101 gene
(According to
1UniProtKB,
neXtProt,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological, and/or
ProSpec,
Biochemical Assays by
Millipore,
Sigma-Aldrich,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene,
Antibodies by
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals, and/or
Epitomics)
About This Section
|
UniProtKB/Swiss-Prot: CA101_HUMAN, Q5SY80 (See
protein sequence)Recommended Name: Uncharacterized protein C1orf101 precursor Size: 951 amino acids; 109662 Da
Subcellular location: Membrane; Single-pass type I membrane protein (Potential)
Sequence caution: Sequence=BC028392; Type=Frameshift; Positions=418;
Secondary accessions: B7Z7X5 Q8IYZ6Alternative splicing: 2 isoforms: Q5SY80-1 Q5SY80-2 Explore the universe of human proteins at neXtProt for C1orf101: NX_Q5SY80
Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins (2 alternative transcripts):
NP_001124429.1 NP_776168.1
ENSEMBL proteins: ENSP00000395796 ENSP00000355489 ENSP00000375716 ENSP00000355492 ENSP00000355491
Human Recombinant Proteins
2 Gene Ontology (GO) cellular component terms (GO ID links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0016020 | membrane |
IEA | -- | | GO:0016021 | integral to membrane |
IEA | -- |
About this table
C1orf101 for ontologies About GeneDecksing
Antibodies for C1orf101:
Assays for C1orf101: |
Protein
Domains/
Families
for C1orf101 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q5SY80 |
Gene Function
for C1orf101 gene
(According to UniProtKB,
IUBMB,and/or
Genatlas, Animal models from MGI Dec 24 2010,
shRNA from
OriGene,
Sigma-Aldrich,
RNAi from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Clones from Millipore,
Sigma-Aldrich,
OriGene,
GenScript,
Sino Biological,
Cell Lines from GenScript,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene.)
About This Section
|
|
Pathways & Interactions
for C1orf101 gene
(Pathways according to
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
PCR Arrays from
SABiosciences,
Proteins Network according to
SABiosciences,
Sigma-Aldrich,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene).
About This Section
|
SABiosciences Custom Pathway-Focused PCR Arrays for C1orf101
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C1orf101
|
Drugs & Compounds
for C1orf101 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for C1orf101
|
Transcripts
for C1orf101 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Tagged/untagged cDNA clones from
OriGene,
Sigma-Aldrich,
GenScript,
Primers from
OriGene and/or
SABiosciences)
About This Section
|
REFSEQ mRNAs for C1orf101 gene (2 alternative transcripts): NM_001130957.1 NM_173807.4 Additional cDNA sequence: AK027205.1 AK302609.1 AK303059.1 BC028392.1 BC032859.1 BX648685.1 7 DOTS entries: DT.97808680 DT.92068038 DT.121461416 DT.121461329 DT.121461365 DT.121461389 DT.92433371 24/69 AceView cDNA sequences (see all 69): AL040701 BG718721 AI074640 BG721654 BG190855 NM_173807 AI139906 AK027205 BG218911 BI562190 AI018394 AL040702 BG186653 BG217357 BG214655 BX648685 BG215227 BC028392 BG217356 BG719299 BG723307 BG185025 BG192906 BC032859
 highest scoring ESTs for C1orf101:AL040701 AA435694 AI018394 AI139906 AL040702 BC028392 BC032859 BG181435 BG182448 BG182933 Unigene Cluster for C1orf101: Chromosome 1 open reading frame 101 Hs.459534 [show with all ESTs]Unigene Representative Sequence: NM_001130957
GeneLoc Exon Structure
11 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000428042 ENST00000366531(uc010pyn.1) ENST00000391841 ENST00000473875(uc001iak.1)
ENST00000485888 ENST00000366534(uc001iam.2 uc001ial.2 uc010pym.1)
ENST00000464170 ENST00000460986 ENST00000487449 ENST00000366533 ENST00000478554
|
Expression
for C1orf101 gene
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Primers from
OriGene and/or
SABiosciences
)
About This Section
| C1orf101 expression in normal and diseased human tissues
1 / 2 / 3 5 probe-sets matching C1orf101 gene
Affymetrix
probe-set |
Array |
GeneAnnot data |
GeneNote data |
GeneTide data |
| # genes |
Sensitivity |
Specificity |
Correlation |
Length |
Gb_Accession |
Consensus |
Uniqueness |
Score |
Rank |
| 61492_at2, 3
|
U95-C |
1 |
0.94 |
1.00 |
1.00 |
1.00 |
AL040701 |
1.00 |
1.00 |
1.00 |
1 |
| 240771_at2, 3
|
U133-B |
1 |
1.00 |
1.00 |
-- |
-- |
AI139906 |
0.80 |
1.00 |
0.91 |
1 |
| 233578_at2, 3
|
U133-B |
1 |
0.64 |
1.00 |
-- |
-- |
AK027205 |
0.60 |
1.00 |
0.82 |
1 |
| 240771_at2
|
U133Plus2 |
1 |
1.00 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
| 233578_at2
|
U133Plus2 |
1 |
0.64 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
About this table
C1orf101 for expression About GeneDecksing
Data from
Genenote
(Publications) and GNF BioGPS
About these images
About these images
CGAP SAGE TAG: AAAAAATAAA
SOURCE GeneReport for Unigene cluster: Hs.459534
SABiosciences Custom PCR Arrays for C1orf101
|
Orthologs
for C1orf101 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for C1orf101 gene from 3 species
About this table Species with no ortholog for C1orf101
ENSEMBL Gene Tree for C1orf101 (if available) |
Paralogs
for C1orf101 gene(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| Paralogs for C1orf101 gene
- TMEM1462
C1orf101 for paralogs About GeneDecksing
|
Genomic Variants
for C1orf101 gene(SNPs according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Chr 1 pos | Sequence | Recs | AA
Chg | Type | More | Recs | Allele
freq | Pop | Total
sample | More |
|---|
About this tableHapMap Linkage Disequilibrium images for C1orf101 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 3 variations for C1orf101
3 CNVs: 9391 71596 97698 | | QIAGEN SeqTarget long-range PCR primers for resequencing C1orf101 |
|
Disorders & Mutations
for C1orf101 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
LSDB, HGMD, GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
C1orf101 for disorders About GeneDecksing
Human Genome Epidemiology (HuGE) Navigator: C1orf101 (1 document)
Export disorders and mutations for C1orf101 gene to outside databases
|
Medical News
for C1orf101 gene(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications
for C1orf101 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6UniProtKB/TrEMBL, and/or
7Novoseek)
About This Section
|
7 PubMed articles for C1orf101 gene integrated from 7 sources:
(articles sorted by number of sources associating them with C1orf101)- The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
- Tyrosine phosphorylated Par3 regulates epithelial tight junction assembly promoted by EGFR signaling. (PubMed id 17053785)2 Wang Y.... Chen Z. (2006)
- The consensus coding sequences of human breast and colorectal cancers. (PubMed id 16959974)2 Sjoeblom T.... Velculescu V.E. (2006)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (2004)
|
External Searches for C1orf101 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing C1orf101 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing C1orf101 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing C1orf101 gene(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for C1orf101 gene:
Search GeneIP for patents involving C1orf101
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for C1orf101 gene(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or
Enzo Life Sciences)
About This Section
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