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Aliases & Descriptionsfor CA10 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions carbonic anhydrase X1 2 Cerebral protein 152 3 CARPX1 2 5 CA-RP X2 3 CA-RPX1 2 CARP X2 3 HUCEP-151 2 carbonic anhydrase-related protein 102 Carbonic anhydrase-related protein X2 3 cerebral protein-152
Export aliases for CA10 gene to outside databases Previous GC identifers: GC17U990008 GC17M052189 GC17M050049 GC17M050182 GC17M047062 GC17M049707
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Summariesfor CA10 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for CA10 : This gene encodes a protein that belongs to the carbonic anhydrase family of zinc metalloenzymes, which catalyze the reversible hydration of carbon dioxide in various biological processes. The protein encoded by this gene is an acatalytic member of the alpha-carbonic anhydrase subgroup, and it is thought to play a role in the central nervous system, especially in brain development. Multiple transcript variants encoding the same protein have been found for this gene. (provided by RefSeq) UniProtKB/Swiss-Prot: CAH10_HUMAN, Q9NS85 Function : Does not have a catalytic activityGene Wiki entry for CA10
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Genomic Viewsfor CA10 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CA10 gene promoter: HOXA9B Meis-1 Bach1 NF-kappaB1 NF-kappaB NF-kappaB2 FOXO1a LCR-F1 Pax-6 ATF-2 Other transcription factors Search SABiosciences Chromatin IP Primers for CA10 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for CA10
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 17q21.33 Ensembl cytogenetic band: 17q22 HGNC cytogenetic band: 17q21 CA10 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17M045077: view genomic region
(about GC identifiers )
Start:
45,077,023 bp from pter
End:
45,606,524 bp from pter
Size:
529,502 bases
Orientation:
minus strand
1 alternative location : Chr 17- 49,707,675-50,237,377
RefSeq DNA sequence: NC_000017.10 NT_010783.15
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Proteinsfor CA10 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: CAH10_HUMAN, Q9NS85 (See
protein sequence )Recommended Name: Carbonic anhydrase-related protein 10 Size : 328 amino acids; 37563 Da
Developmental stage : Not expressed in fetal brain
Secondary accessions : B2R7J0Explore the universe of human proteins at neXtProt for CA10: NX_Q9NS85 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001076002.1 NP_001076003.1 NP_064563.1 ENSEMBL proteins: ENSP00000390666 ENSP00000285273 ENSP00000405388 ENSP00000340363 Human Recombinant Proteins 1 Gene Ontology (GO) cellular component term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005575 cellular_component
ND --
About this table
CA10 for ontologies About GeneDecksing Antibodies for CA10: Assays for CA10:
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Protein
Domains/ Familiesfor CA10 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CA10 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9NS85 ProtoNet protein and cluster: Q9NS85
1 Blocks protein family : IPB001148 Carbonic anhydrase UniProtKB/Swiss-Prot: CAH10_HUMAN, Q9NS85 Similarity : Belongs to the alpha-carbonic anhydrase family
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Gene Functionfor CA10 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: CAH10_HUMAN, Q9NS85 Function : Does not have a catalytic activity
1 Gene Ontology (GO) molecular function term (GO ID links to tree view) :
About this table
CA10 for ontologies About GeneDecksing
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Pathways & Interactionsfor CA10 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
CA10 for pathways About GeneDecksing 1 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathway for CA10 SABiosciences Custom Pathway-Focused PCR Arrays for CA10 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for CA10 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CA10 1 Gene Ontology (GO) biological process term (GO ID links to tree view) :
About this table
CA10 for ontologies About GeneDecksing
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Drugs & Compoundsfor CA10 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for CA10
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Transcriptsfor CA10 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for CA10 gene (3 alternative transcripts): NM_001082533.1 NM_001082534.1 NM_020178.4
Additional cDNA sequence: AB001597.1 AB036836.1 AF288385.1 AK294652.1 AK313001.1 AL161812.1 AY358509.1 BC020577.1 BC029865.1 BC047456.1 BC068462.1 CR597480.1 CR609088.1 CR749607.1
8 DOTS entries : DT.97816776 DT.97784104 DT.92041233 DT.100837832 DT.446487 DT.75114486 DT.92418770 DT.120993495
24/98 AceView cDNA sequences (see all 98 ):
BX281234 BC047456 AY358509 AI470807 AI815617 AF288385 AA709457 AA063170 CR749607 T30964 CR609088 F06106 AA716317 BM703408 AA723288 BM723566 AI074499 F05437 BF934583 F11600 AI338414 Z41624 H10857 Z40949
highest scoring ESTs for CA10 :AB036836 AF288385 AI815617 AI815895 AL161812 AY358509 BC020577 BC029865 BC047456 BC068462 Unigene Cluster for CA10:
Carbonic anhydrase X Hs.463466 [show with all ESTs ] Unigene Representative Sequence: NM_001082533 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for CA10 (see all 7 ) ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b SP1 :                   -   -                 SP2 :                                     SP3 :                     -                 SP4 :     -   -                               SP5 :     -   -                              
About this scheme ECgene alternative splicing isoforms for CA10 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000442502 (uc002ity.3 uc002itz.2 ) ENST00000285273 (uc002itx.3 )ENST00000451037 (uc002itv.3 uc002itw.3 ) ENST00000340813 (uc002itu.3 )
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Expression for CA10 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section CA10 expression in normal and diseased human tissues 1 / 2 / 3
6 probe-sets matching CA10 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
50694_at2 , 3
U95-B
1
1.00
1.00
0.97
1.47
AI815895
0.80
1.00
0.91
1
46593_at2 , 3
U95-B
1
1.00
1.00
0.99
0.69
H15418
0.80
1.00
0.91
1
223550_s_at2 , 3
U133-B
1
1.00
1.00
--
--
AF288385
0.80
1.00
0.91
1
220889_s_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_020178
0.60
1.00
0.82
1
223550_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
220889_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
About this table
CA10 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CCCCCCTGTG SOURCE GeneReport for Unigene cluster: Hs.463466 UniProtKB/Swiss-Prot: CAH10_HUMAN, Q9NS85 Tissue specificity : Strong expression in brain and central nervous system
SABiosciences Custom PCR Arrays for CA10
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Orthologsfor CA10 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for CA10 gene from 5/8 species (see all 8 )
About this table Species with no ortholog for CA10 ENSEMBL Gene Tree for CA10 (if available)
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Paralogsfor CA10 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for CA10 gene CA12 2 CA6 2 CA4 2 CA11 2 CA9 2 CA14 2
CA10 for paralogs About GeneDecksing
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Genomic Variantsfor CA10 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 17 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for CA10 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 14 variations for CA10 4 CNVs : 67221 61576 102481 47874 10 Indels : 88536 88532 77663 42936 77664 88531 88533 77665 88535 88534
QIAGEN SeqTarget long-range PCR primers for resequencing CA10
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Disorders & Mutationsfor CA10 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CA10 for disorders About GeneDecksing
OMIM: 604642 Human Genome Epidemiology (HuGE) Navigator: CA10 (4 documents) Export disorders and mutations for CA10 gene to outside databases
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Medical Newsfor CA10 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor CA10 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/18 PubMed articles for CA10 gene, integrated from 7 sources (see all 18 ): (articles sorted by number of sources associating them with CA10) CCG repeats in cDNAs from human brain. (PubMed id 9921901) 1 , 2 , 3 Kleiderlein J.J.... Margolis R.L. (1998) cDNA sequence of human carbonic anhydrase-related protein, CA-RP X: mRNA expressions of CA-RP X and XI in human brain. (PubMed id 11311946) 1 , 2 , 7 Okamoto N.... Onishi S. (2001) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 1 , 2 Olsen J.V....Mann M. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 Clark H.F.... Gray A.M. (2003) Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166) 1 , 2 Wiemann S.... Poustka A. (2001) Functional diversity, conservation, and convergence in the evolution of the alpha-, beta-, and gamma-carbonic anhydrase gene families. (PubMed id 8673298) 1 , 3 Hewett-Emmett D. and Tashian R.E. (1996) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Nucleotide variations in genes encoding carbonic anhydrase 8 and 10 associated with femoral bone mineral density in Japanese female with osteoporosis. (PubMed id 19172221) 1 Mori S....Ikegawa S. (2009) Coeliac disease associated risk variants in TNFAIP3 and REL implicate altered NF-{kappa}B signalling. (PubMed id 19240061) 1 Trynka G....Wijmenga C. (2009)
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External Searches for CA10 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CA10 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CA10 gene
(According to HUGE )
About This Section --
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Specialized Databases showing CA10 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for CA10 gene: Search GeneIP for patents involving CA10 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CA10 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for CA10
ELISAs and CLIAs for CA10
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