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Aliases & Descriptionsfor CCNK gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions cyclin K1 2 CPR41 2 3 MGC91132 cyclin-K2
Export aliases for CCNK gene to outside databases Previous GC identifers: GC14P097459 GC14P093763 GC14P097937 GC14P097949 GC14P099017 GC14P099947
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Summariesfor CCNK gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for CCNK : The protein encoded by this gene is a member of the transcription cyclin family. These cyclins may regulate transcription through their association with and activation of cyclin-dependent kinases (CDK) that phosphorylate the C-terminal domain (CTD) of the large subunit of RNA polymerase II. This gene product may play a dual role in regulating CDK and RNA polymerase II activities. (provided by RefSeq) UniProtKB/Swiss-Prot: CCNK_HUMAN, O75909 Function : May play a role in transcriptional regulation. In vitro, is associated with a kinase activity toward both RNApolymerase II C-terminal domain and CDK2 (CAK) Gene Wiki entry for CCNK (Cyclin K)
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Genomic Viewsfor CCNK gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CCNK gene promoter: STAT3 p53 Cart-1 RREB-1 deltaCREB CREB E4BP4 AREB6 HNF-1A Pax-5 Other transcription factors Search SABiosciences Chromatin IP Primers for CCNK Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for CCNK
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 14q32 Ensembl cytogenetic band: 14q32.2 HGNC cytogenetic band: 14q32 CCNK Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 14 GeneLoc Exon Structure
GeneLoc location for GC14P080131: view genomic region
(about GC identifiers )
Start:
80,131,153 bp from pter
End:
80,161,252 bp from pter
Size:
30,100 bases
Orientation:
plus strand
1 alternative location : Chr 14+ 99,947,739-99,977,851
RefSeq DNA sequence: NC_000014.8 NT_026437.12
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Proteinsfor CCNK gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: CCNK_HUMAN, O75909 (See
protein sequence )Recommended Name: Cyclin-K Size : 580 amino acids; 64240 Da
Subunit : Part of a cyclin-kinase pair in the RNA polymerase II holoenzyme. Binds to CDK9
PDB structures from and Proteopedia : 2I53 (3D)
 
Secondary accessions : Q59FT6 Q86U16 Q96B63 Q9NNY9Alternative splicing : 4 isoforms : O75909-3 O75909-2 O75909-1 O75909-4 Explore the universe of human proteins at neXtProt for CCNK: NX_O75909 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_001092872.1 ENSEMBL proteins: ENSP00000369596 ENSP00000216279 ENSP00000395705 ENSP00000374529 ENSP00000398898 Human Recombinant Proteins Antibodies for CCNK: Assays for CCNK:
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Protein
Domains/ Familiesfor CCNK gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CCNK for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry O75909 ProtoNet protein and cluster: O75909
1 Blocks protein family : IPB006670 Cyclin UniProtKB/Swiss-Prot: CCNK_HUMAN, O75909 Similarity : Belongs to the cyclin family. Cyclin C subfamily
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Gene Functionfor CCNK gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: CCNK_HUMAN, O75909 Function : May play a role in transcriptional regulation. In vitro, is associated with a kinase activity toward both RNApolymerase II C-terminal domain and CDK2 (CAK)
Genatlas biochemistry entry for CCNK :cyclin K,RNA polymerase II associated cyclin,ubiquitously expressed but most abundant in developing germ cells of adult testis and ovary,likely involved in the regulation of basal transcription 1 Gene Ontology (GO) molecular function term (GO ID links to tree view) :
About this table
CCNK for ontologies About GeneDecksing
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Pathways & Interactionsfor CCNK gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
CCNK for pathways About GeneDecksing 1 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathway for CCNK SABiosciences Custom Pathway-Focused PCR Arrays for CCNK Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for CCNK SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for CCNK 5/16 Interacting proteins for CCNK (O75909 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 16 )About this table 5/6 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 6 ):
About this table
CCNK for ontologies About GeneDecksing
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Drugs & Compoundsfor CCNK gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for CCNK
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Transcriptsfor CCNK gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for CCNK gene: NM_001099402.1
Additional cDNA sequence: AB209373.1 AK000799.1 AK124466.1 AK311075.1 BC015935.1 BT006950.1 BX247958.1
14 DOTS entries : DT.215479 DT.95098492 DT.100723022 DT.100812855 DT.40192993 DT.86999816 DT.91946474 DT.102830769
DT.91990905 DT.95150722 DT.120780549 DT.92445866 DT.95093600 DT.99995239 24/175 AceView cDNA sequences (see all 175 ):
CN484736 W74357 BQ230590 BM800386 BU171093 AW189101 CF541374 BM717996 BM508958 AA298483 BM726838 AI082525 BM505592 AA512928 AI001776 CD722655 AI937130 AW189612 NM_003858 BM504212 CA398104 AA609588 AI088693 AI935458
highest scoring ESTs for CCNK :AA528091 AA360685 AA370112 AA421192 AA862669 AI081289 AL121493 AW020408 AW959005 BC015935 Unigene Cluster for CCNK:
Cyclin K Hs.510409 [show with all ESTs ] Unigene Representative Sequence: AB209373 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for CCNK (see all 6 ) ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 SP1 :           -                       SP2 :     -   -     -                       SP3 :       -     -                       SP4 :     -       -                       SP5 :                                
About this scheme ECgene alternative splicing isoforms for CCNK 5 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000380246 ENST00000216279 ENST00000437596 ENST00000389879 (uc001ygi.3 uc001ygg.3 )ENST00000411691
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Expression for CCNK gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section CCNK expression in normal and diseased human tissues 1 / 2 / 3
9 probe-sets matching CCNK gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
90627_at2 , 3
U95-E
1
0.88
1.00
0.85
0.89
AA630424
0.60
1.00
0.82
1
91009_at2 , 3
U95-E
1
0.75
1.00
0.70
0.43
AL121493
0.80
1.00
0.91
1
65151_at2 , 3
U95-C
1
0.75
1.00
-0.19
1.73
AA528091
1.00
0.90
0.95
1
82219_at2 , 3
U95-D
1
0.69
1.00
0.48
1.26
AA806291
0.60
1.00
0.82
1
91012_g_at2 , 3
U95-E
1
0.50
1.00
0.30
0.73
AL121493
0.80
1.00
0.91
1
219273_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_003858
0.60
1.00
0.82
1
225824_at2 , 3
U133-B
1
0.73
1.00
--
--
AA528091
1.00
0.90
0.95
1
219273_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
225824_at2
U133Plus2
1
0.73
1.00
--
--
--
--
--
--
--
About this table
CCNK for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ACACCCAGAA SOURCE GeneReport for Unigene cluster: Hs.510409 UniProtKB/Swiss-Prot: CCNK_HUMAN, O75909 Tissue specificity : Ubiquitously expressed. Highest levels in testis
SABiosciences Custom PCR Arrays for CCNK
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Orthologsfor CCNK gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for CCNK gene from 5/11 species (see all 11 )
About this table Species with no ortholog for CCNK ENSEMBL Gene Tree for CCNK (if available)
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Paralogsfor CCNK gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for CCNK gene CCNL2 2 CCNT2 2 CCNC 2 CCNL1 2 FAM58A 2 CCNT1 2
CCNK for paralogs About GeneDecksing
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Genomic Variantsfor CCNK gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 14 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for CCNK (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for CCNK: --
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Disorders & Mutationsfor CCNK gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CCNK for disorders About GeneDecksing
OMIM: 603544 4 Novoseek disease relationships for CCNK gene
About this table Export disorders and mutations for CCNK gene to outside databases
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Medical Newsfor CCNK gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor CCNK gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/39 PubMed articles for CCNK gene, integrated from 7 sources (see all 39 ): (articles sorted by number of sources associating them with CCNK) Human cyclin K, a novel RNA polymerase II-associated cyclin possessing both carboxy-terminal domain kinase and Cdk-activating kinase activity. (PubMed id 9632813) 1 , 2 , 3, 7 Edwards M.C.... Elledge S.J. (1998) Cyclin K functions as a CDK9 regulatory subunit and participates in RNA polymerase II transcription. (PubMed id 10574912) 1 , 2 , 3 Fu T.J.... Flores O. (1999) Crystal structure of human cyclin K, a positive regulator of cyclin- dependent kinase 9. (PubMed id 17169370) 1 , 2 , 7 Baek K.... Ladias J.A. (2007) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 1 , 2 Olsen J.V....Mann M. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935) 1 , 2 Beausoleil S.A....Gygi S.P. (2004) Cyclin K as a direct transcriptional target of the p53 tumor suppressor. (PubMed id 11988847) 1 , 7 Mori T....Arakawa H. (2002) P-TEFb containing cyclin K and Cdk9 can activate transcription via RNA. (PubMed id 11884399) 1 , 7 Lin X....Peterlin B.M. (2002) Cyclin K and cyclin D1b are oncogenic in myeloma cell s. (PubMed id 20459741) 1 Marsaud V....Sola B. (2010) Large-scale proteomics analysis of the human kinome. (PubMed id 19369195) 2 Oppermann F.S.... Daub H. (2009)
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External Searches for CCNK gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CCNK gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CCNK gene
(According to HUGE )
About This Section --
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Specialized Databases showing CCNK gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for CCNK gene: Search GeneIP for patents involving CCNK GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CCNK gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for CCNK
ELISAs and CLIAs for CCNK
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