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Aliases & Descriptionsfor CD53 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions CD53 molecule1 2 leukocyte surface antigen CD532 CD53 antigen1 2 3 tetraspanin-252 TSPAN251 2 3 cell surface antigen2 MOX442 3 5 transmembrane glycoprotein2 Cell surface glycoprotein CD532 3 antigen MOX44 identified by monoclonal antibody MRC-OX442 CD53 glycoprotein2 Tspan-253 tspan-252 Tetraspanin-253 CD53 tetraspan antigen2
Export aliases for CD53 gene to outside databases Previous GC identifers: GC01P111831 GC01P110282 GC01P110516 GC01P110714 GC01P111127 GC01P111413
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Summariesfor CD53 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for CD53 : The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as the tetraspanin family. Most of these members are cell-surface proteins that are characterized by the presence of four hydrophobic domains. The proteins mediate signal transduction events that play a role in the regulation of cell development, activation, growth and motility. This encoded protein is a cell surface glycoprotein that is known to complex with integrins. It contributes to the transduction of CD2-generated signals in T cells and natural killer cells and has been suggested to play a role in growth regulation. Familial deficiency of this gene has been linked to an immunodeficiency associated with recurrent infectious diseases caused by bacteria, fungi and viruses. Alternative splicing results in multiple transcript variants encoding the same protein. (provided by RefSeq) UniProtKB/Swiss-Prot: CD53_HUMAN, P19397 Function : May be involved in growth regulation in hematopoietic cellsGene Wiki entry for CD53
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Genomic Viewsfor CD53 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CD53 gene promoter: AP-1 Bach1 Pax-6 RORalpha2 ISGF-3 Bach2 c-Myb STAT5B CUTL1 STAT5A Other transcription factors Search SABiosciences Chromatin IP Primers for CD53 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1p13 Ensembl cytogenetic band: 1p13.3 HGNC cytogenetic band: 1p13 CD53 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P109285: view genomic region
(about GC identifiers )
Start:
109,285,008 bp from pter
End:
109,313,782 bp from pter
Size:
28,775 bases
Orientation:
plus strand
1 alternative location : Chr 1+ 111,415,722-111,442,558
RefSeq DNA sequence: NC_000001.10 NT_032977.9
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Proteinsfor CD53 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: CD53_HUMAN, P19397 (See
protein sequence )Recommended Name: Leukocyte surface antigen CD53 Size : 219 amino acids; 24341 Da
Subcellular location : Membrane; Multi-pass membrane protein
Secondary accessions : B2R905 Q5U0D6Explore the universe of human proteins at neXtProt for CD53: NX_P19397
REFSEQ proteins (2 alternative transcripts):
NP_000551.1 NP_001035122.1 ENSEMBL proteins: ENSP00000412250 ENSP00000271324 Human Recombinant Proteins 3 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
CD53 for ontologies About GeneDecksing Antibodies for CD53: Assays for CD53:
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Protein
Domains/ Familiesfor CD53 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CD53 for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P19397 ProtoNet protein and cluster: P19397
1 Blocks protein family : IPB000301 Transmembrane four family signature UniProtKB/Swiss-Prot: CD53_HUMAN, P19397 Similarity : Belongs to the tetraspanin (TM4SF) family
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Gene Functionfor CD53 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: CD53_HUMAN, P19397 Function : May be involved in growth regulation in hematopoietic cells
Genatlas biochemistry entry for CD53 :cell differentiation antigen 53,32-40kDa,single chain glycoprotein,identified by monoclonal antibodies H129,H136,MEM-53,HD77,see MOX44
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Pathways & Interactionsfor CD53 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for CD53 SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for CD53 1 Gene Ontology (GO) biological process term (GO ID links to tree view) :
About this table
CD53 for ontologies About GeneDecksing
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Drugs & Compoundsfor CD53 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for CD53
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Transcriptsfor CD53 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for CD53 gene (2 alternative transcripts): NM_000560.3 NM_001040033.1
Additional cDNA sequence: AK298723.1 AK313582.1 BC035456.1 BC040693.1 BT019643.1 CR592401.1 CR598355.1 CR605120.1 CR609698.1 CR614019.1 CR619551.1 CR620545.1 M37033.1 M60871.1
20 DOTS entries : DT.92433604 DT.100819256 DT.100019308 DT.99943676 DT.121382896 DT.209137 DT.121382848 DT.92433596
DT.95109186 DT.100026950 DT.100819258 DT.121382833 DT.121382890 DT.91819522 DT.100772197 DT.100819257 DT.100819261 DT.75111548 DT.92433595 DT.95109190 24/326 AceView cDNA sequences (see all 326 ):
CR620545 CD364590 H70124 CR605120 BM457687 BX381661 BP367968 AI022073 CR592401 AI032692 H98696 BC035456 BI770932 AW575174 AI076089 AA383886 BC040693 BX378202 BP338495 AA810480 AI040645 AA897735 CR609698 BU073271
highest scoring ESTs for CD53 :M37033 AA362173 AA362399 AA362408 AA648126 AA770669 AA773833 AA872291 AA884893 AA894962 Unigene Cluster for CD53:
CD53 molecule Hs.443057 [show with all ESTs ] Unigene Representative Sequence: NM_001040033 GeneLoc Exon Structure 5/10 Alternative Splicing Database (ASD) splice patterns (SP) for CD53 (see all 10 ) ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b · 6c ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10a · 10b · 10c SP1 :   -           -   -           -     -               SP2 :             -   -           -     -               SP3 :             -   -           -     -   -             SP4 :   -           -   -       -   -   -   -   -   -   -   -         SP5 :             -   -           -                  
About this scheme ECgene alternative splicing isoforms for CD53 7 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000476408 ENST00000429072 (uc010owa.1 ) ENST00000464329 ENST00000271324 (uc001dzw.2 uc001dzx.2 uc001dzy.2 )ENST00000468160 ENST00000497404 ENST00000471220
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Expression for CD53 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section CD53 expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching CD53 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
38378_at2 , 3
U95-A
1
1.00
1.00
1.00
1.00
M37033
1.00
1.00
1.00
1
203416_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_000560
0.60
1.00
0.82
1
203416_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
About this table
CD53 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AAGCCCTACA SOURCE GeneReport for Unigene cluster: Hs.443057 Expression variation in blood from EXPOLDB for CD53
UniProtKB/Swiss-Prot: CD53_HUMAN, P19397 Tissue specificity : B-cells, monocytes, macrophages, neutrophils, single (CD4 or CD8) positive thymocytes andperipheral T-cells
SABiosciences Custom PCR Arrays for CD53
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Orthologsfor CD53 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for CD53 gene from 5/6 species (see all 6 )
About this table Species with no ortholog for CD53 ENSEMBL Gene Tree for CD53 (if available)
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Paralogsfor CD53 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for CD53 gene TSPAN9 2 TSPAN18 2 TSPAN1 2 TSPAN4 2
CD53 for paralogs About GeneDecksing Pseudogenes 1 related pseudogene
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Genomic Variantsfor CD53 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 1 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for CD53 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for CD53: --
QIAGEN SeqTarget long-range PCR primers for resequencing CD53
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Disorders & Mutationsfor CD53 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CD53 for disorders About GeneDecksing
OMIM: 151525 1 Novoseek disease relationship for CD53 gene
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
tumors
0
4
12606948 (2), 15931266 (1)
About this table Human Genome Epidemiology (HuGE) Navigator: CD53 (3 documents) Export disorders and mutations for CD53 gene to outside databases
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Medical Newsfor CD53 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor CD53 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/59 PubMed articles for CD53 gene, integrated from 7 sources (see all 59 ): (articles sorted by number of sources associating them with CD53) The human leucocyte surface antigen CD53 is a protein structurally similar to the CD37 and MRC OX-44 antigens. (PubMed id 1700763) 1 , 2 , 7 Angelisova P.... Horejsi V. (1990) Genomic structure of the human CD53 gene. (PubMed id 8319976) 1 , 3, 7 Korinek V. and Horejsi V. (1993) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 1 , 2 Gregory S.G.... Bentley D.R. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Identification and analysis of cDNA clones encoding CD53. A pan- leukocyte antigen related to membrane transport proteins. (PubMed id 2258620) 1 , 2 Amiot M. (1990) Gene structure, chromosomal localization, and protein sequence of mouse CD53 (Cd53): evidence that the transmembrane 4 superfamily arose by gene duplication. (PubMed id 8452817) 1 , 7 Wright M.D....Williams A.F. (1993) Supramolecular complexes of MHC class I, MHC class II, CD20, and tetraspan molecules (CD53, CD81, and CD82) at the surface of a B cell line JY. (PubMed id 8816400) 1 , 7 Szollosi J....Damjanovich S. (1996) Apoptosis protection and survival signal by the CD53 tetraspanin antigen. (PubMed id 12606948) 1 , 7 Yunta M. and Lazo P.A. (2003) Differential stability of tetraspanin/tetraspanin interactions: role of palmitoylation. (PubMed id 11959120) 1 , 7 Charrin S....Rubinstein E. (2002) Functional expression of transmembrane 4 superfamily molecules on human eosinophils. (PubMed id 10529602) 1 , 7 Matsumoto K....Kurashige T. (1999)
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External Searches for CD53 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CD53 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CD53 gene
(According to HUGE )
About This Section --
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Specialized Databases showing CD53 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for CD53 gene: Search GeneIP for patents involving CD53 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CD53 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for CD53
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