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Aliases & Descriptionsfor CENPB gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions centromere protein B, 80kDa1 2 CENP-B2 3 centromere protein B (80kD)1 centromere autoantigen B2 major centromere autoantigen B2 Centromere protein B3
Export aliases for CENPB gene to outside databases Previous GC identifers: GC20M003752 GC20M003759
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Summariesfor CENPB gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for CENPB : This gene product is a highly conserved protein that facilitates centromere formation. It is a DNA-binding protein that is derived from transposases of the pogo DNA transposon family. It contains a helix-loop-helix DNA binding motif at the N-terminus, and a dimerization domain at the C-terminus. The DNA binding domain recognizes and binds a 17-bp sequence (CENP-B box) in the centromeric alpha satellite DNA. This protein is proposed to play an important role in the assembly of specific centromere structures in interphase nuclei and on mitotic chromosomes. It is also considered a major centromere autoantigen recognized by sera from patients with anti-centromere antibodies. (provided by RefSeq) UniProtKB/Swiss-Prot: CENPB_HUMAN, P07199 Function : Interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satelliteDNA, called the CENP-B box. May organize arrays of centromere satellite DNA into a higher order structure which then directs centromere formation and kinetochore assembly in mammalian chromosomes
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Genomic Viewsfor CENPB gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CENPB gene promoter: GR-alpha GR-beta POU2F2 (Oct-2.1) POU2F1 oct-B2 Oct-B1 POU2F2B oct-B3 POU2F2 POU2F2C Other transcription factors Search SABiosciences Chromatin IP Primers for CENPB Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for CENPB
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 20p13 Ensembl cytogenetic band: 20p13 HGNC cytogenetic band: 20p13 CENPB Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 20 GeneLoc Exon Structure
GeneLoc location for GC20M003712: view genomic region
(about GC identifiers )
Start:
3,713,053 bp from pter
End:
3,715,727 bp from pter
Size:
2,675 bases
Orientation:
minus strand
1 alternative location : Chr 20- 3,764,500-3,767,337
RefSeq DNA sequence: NC_000020.10 NT_011387.8
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Proteinsfor CENPB gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: CENPB_HUMAN, P07199 (See
protein sequence )Recommended Name: Major centromere autoantigen B Size : 599 amino acids; 65171 Da
Subunit : Homodimer. Interacts with CENPT
Subcellular location : Nucleus. Chromosome, centromere
PDB structures from and Proteopedia : 1BW6 (3D)
 1HLV (3D)
 1UFI (3D)
 Explore the universe of human proteins at neXtProt for CENPB: NX_P07199 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_001801.1 ENSEMBL proteins: ENSP00000369075 Human Recombinant Proteins 3 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
CENPB for ontologies About GeneDecksing Antibodies for CENPB: Assays for CENPB:
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Protein
Domains/ Familiesfor CENPB gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CENPB for domains About GeneDecksing 5/8 InterPro domains/families (see all 8 ):
Graphical View of Domain Structure for InterPro Entry P07199 ProtoNet protein and cluster: P07199
2 Blocks protein families : IPB004875 CENP-B protein IPB006695 CENP-B UniProtKB/Swiss-Prot: CENPB_HUMAN, P07199 Similarity : Contains 1 HTH CENPB-type DNA-binding domainSimilarity : Contains 1 HTH psq-type DNA-binding domain
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Gene Functionfor CENPB gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: CENPB_HUMAN, P07199 Function : Interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satelliteDNA, called the CENP-B box. May organize arrays of centromere satellite DNA into a higher order structure which then directs centromere formation and kinetochore assembly in mammalian chromosomes
Genatlas biochemistry entry for CENPB :centromere protein B (80kDa),associated with most human centromeres,function unknown 5/7 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 7 ):
About this table
CENPB for ontologies About GeneDecksing Animal Models: 5 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Cenpb) :
CENPB for phenotypes About GeneDecksing
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Pathways & Interactionsfor CENPB gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for CENPB SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for CENPB 1 Interacting protein for CENPB (P07199 2 ) via UniProtKB, MINT, and/or STRING About this table 1 Gene Ontology (GO) biological process term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0045449 regulation of transcription
IEA --
About this table
CENPB for ontologies About GeneDecksing
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Drugs & Compoundsfor CENPB gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
CENPB for compounds About GeneDecksing Browse Tocris compounds for CENPB 2 Novoseek chemical compound relationships for CENPB gene
About this table
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Transcriptsfor CENPB gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for CENPB gene: NM_001810.5
Additional cDNA sequence: AF002714.1 BC003649.2 BC012297.1 BC021577.1 BC033658.1 BC040446.2 BC053847.1 CR591718.1 X05299.1
8 DOTS entries : DT.413828 DT.95204579 DT.97847830 DT.102825597 DT.92440831 DT.95204578 DT.95204582 DT.97847829
24/244 AceView cDNA sequences (see all 244 ):
BQ446139 BQ224597 BQ677772 CK724874 BU541735 AI277571 BC012297 BU846455 BU729396 BU552634 BQ016707 BM716657 NM_001810 BC021577 AW068260 BU170013 BU855627 BQ428113 BE622329 BC053847 BM703471 BQ025796 BU517161 BQ433040
highest scoring ESTs for CENPB :X05299 AA324050 AA455552 AW016300 AW068260 AW245678 BC003649 BC012297 BC021577 BC040446 Unigene Cluster for CENPB:
Centromere protein B, 80kDa Hs.516855 [show with all ESTs ] Unigene Representative Sequence: NM_001810 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000379751 (uc002wjk.2 )
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Expression for CENPB gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section CENPB expression in normal and diseased human tissues 1 / 2 / 3
5 probe-sets matching CENPB gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
63959_r_at2 , 3
U95-C
1
0.88
1.00
0.96
1.05
AA639474
0.40
1.00
0.76
1
37931_at2 , 3
U95-A
1
0.75
1.00
0.94
0.89
X05299
1.00
1.00
1.00
1
50959_at2 , 3
U95-C
1
0.75
1.00
0.98
1.06
AW016300
0.80
1.00
0.91
1
212437_at2
U133-A
1
0.82
1.00
--
--
--
--
--
--
--
212437_at2
U133Plus2
1
0.82
1.00
--
--
--
--
--
--
--
About this table
CENPB for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CCTCTCCTCC SOURCE GeneReport for Unigene cluster: Hs.516855 Expression variation in blood from EXPOLDB for CENPB
SABiosciences Custom PCR Arrays for CENPB
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Orthologsfor CENPB gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for CENPB gene from 5 species
About this table Species with no ortholog for CENPB ENSEMBL Gene Tree for CENPB (if available)
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Paralogsfor CENPB gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for CENPB gene TIGD7 2 JRKL 2 TIGD2 2 TIGD1 2 TIGD5 2 TIGD3 2 TIGD6 2 TIGD4 2
CENPB for paralogs About GeneDecksing
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Genomic Variantsfor CENPB gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 20 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for CENPB (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for CENPB: --
QIAGEN SeqTarget long-range PCR primers for resequencing CENPB
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Disorders & Mutationsfor CENPB gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CENPB for disorders About GeneDecksing
OMIM: 117140 10/20 Novoseek disease relationships for CENPB gene (see all 20 )
About this table Export disorders and mutations for CENPB gene to outside databases
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Medical Newsfor CENPB gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor CENPB gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/149 PubMed articles for CENPB gene, integrated from 7 sources (see all 149 ): (articles sorted by number of sources associating them with CENPB) A human centromere protein, CENP-B, has a DNA binding domain containing four potential alpha helices at the NH2 terminus, which is separable from dimerizing activity. (PubMed id 1469042) 1 , 2 , 7 Yoda K.... Okazaki T. (1992) CENP-B is a highly conserved mammalian centromere protein with homology to the helix-loop-helix family of proteins. (PubMed id 1893793) 1 , 2 , 7 Sullivan K.F. and Glass C.A. (1991) A helix-turn-helix structure unit in human centromere protein B (CENP-B). (PubMed id 9451007) 1 , 2 , 7 Iwahara J....Yokoyama S. (1998) CENP-A, -B, and -C chromatin complex that contains th e I-type alpha-satellite array constitutes the prekinetochore in HeLa cells. (PubMed id 11884609) 1 , 3, 7 Ando S....Yoda K. (2002) Assembly of the inner kinetochore proteins CENP-A and CENP-B in living human cells. (PubMed id 18072184) 1 , 2 , 7 Orthaus S....Diekmann S. (2008) Live-cell imaging reveals sustained centromere binding of CENP-T via CENP-A and CENP-B. (PubMed id 19412974) 1 , 2 , 7 Hellwig D....Diekmann S. (2008) Mapping of the human CENP-B gene to chromosome 20 and the CENP-C gene to chromosome 12 by a rapid cycle DNA amplification procedure. (PubMed id 8406460) 1 , 3, 7 Sugimoto K....Himeno M. (1993) Phosphoproteome analysis of the human mitotic spindle. (PubMed id 16565220) 1 , 2 Nousiainen M.... Koerner R. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052) 1 , 2 Deloukas P....Rogers J. (2001)
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External Searches for CENPB gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CENPB gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CENPB gene
(According to HUGE )
About This Section --
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Specialized Databases showing CENPB gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for CENPB gene: Search GeneIP for patents involving CENPB GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CENPB gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for CENPB
Recombinant Protein for CENPB
ELISAs and CLIAs for CENPB
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