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CMTM8 Gene

protein-coding   GIFtS: 49

GC03P032217
CKLF-like MARVEL transmembrane domain containing 8
(Previous names: chemokine-like factor super family 8, chemokine-like factor superfamily 8 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: CKLFSF8)
Products    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases & Descriptions
CKLF-like MARVEL transmembrane domain containing 81 2     CKLFSF82 3
chemokine-like factor superfamily 81 2     CKLF-like MARVEL transmembrane domain-containing protein 82
chemokine-like factor super family 81 2     CKLFSF8-V22
Chemokine-like factor superfamily member 82 3     

External Ids:    HGNC: 191791   Entrez Gene: 1521892   Ensembl: ENSG000001702937   UniProtKB: Q8IZV23   

Export aliases for CMTM8 gene to outside databases

Previous GC identifer: GC03P032256


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for CMTM8:
This gene belongs to the chemokine-like factor gene superfamily, a novel family that is similar to the chemokine and
the transmembrane 4 superfamilies. This gene is one of several chemokine-like factor genes located in a cluster on
chromosome 3. This gene is widely expressed in many tissues, but the exact function of the encoded protein is unknown.
(provided by RefSeq)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CMTM8 gene promoter:
         CUTL1   STAT5B   FOXC1   Bach1   STAT5A   Nkx2-2   USF1   ATF6   NRSF form 1   NRSF form 2   
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for CMTM8

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for CMTM8 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3p22.3   Ensembl cytogenetic band:  3p22.3   HGNC cytogenetic band: 3p22.2

CMTM8 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CMTM8 gene location

GeneLoc gene densities for chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P032217:  view genomic region     (about GC identifiers)

Start:
32,215,225 bp from pter
End:
32,411,817 bp from pter
Size:
196,593 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000003.11  NT_022517.18  

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
About This Section

UniProtKB/Swiss-Prot: CKLF8_HUMAN, Q8IZV2 (See protein sequence)
Recommended Name: CKLF-like MARVEL transmembrane domain-containing protein 8  
Size: 173 amino acids; 19572 Da
Subcellular location: Membrane; Multi-pass membrane protein
Secondary accessions: Q8IW01

Explore the universe of human proteins at neXtProt for CMTM8: NX_Q8IZV2 

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_849199.2  

    ENSEMBL proteins: 
    ENSP00000307741 ENSP00000412934 


    Human Recombinant Proteins 
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    3 Gene Ontology (GO) cellular component terms (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005615 extracellular space IEA--
    GO:0016020 membrane IEA--
    GO:0016021 integral to membrane IEA--
    About this table

    CMTM8 for ontologies           About GeneDecksing



    Antibodies for CMTM8: 
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    Browse ELISAs and CLIAs at Uscn 


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    CMTM8 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR013295 MAL
     IPR021128 MARVEL-like_dom
     IPR008253 Marvel

    Graphical View of Domain Structure for InterPro Entry Q8IZV2

    ProtoNet protein and cluster: Q8IZV2

    1 Blocks protein family: IPB008253 Marvel

    UniProtKB/Swiss-Prot: CKLF8_HUMAN, Q8IZV2
    Similarity: Belongs to the chemokine-like factor family
    Similarity: Contains 1 MARVEL domain


    (According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
        
    Browse for Gene Knock-down Tools from Millipore
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    Browse microRNA target validation systems at Sigma-Aldrich 
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of CMTM8 
    1 SABiosciences Assays for microRNA that regulate CMTM8:
    hsa-miR-323-3p

    Gene
    Editing:
    Browse CompoZr Knockout ZFN at Sigma-Aldrich 

    Clones:Browse Clones for the Expression of Recombinant Proteins Available from Millipore
    Browse iPSC Reprogramming Factors at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector: CMTM8
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector: CMTM8
    OriGene untagged cDNA clones in CMV expression vector: CMTM8
    OriGene 3'-UTR clone: CMTM8 
    Browse MicroRNA Expression Plasmids 
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    Sino Biological Human cDNA Clone for CMTM8

    Cell
    Lines:
      
    GenScript Custom overexpressing Cell Line Services for CMTM8 

    1 Gene Ontology (GO) molecular function term (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005125 cytokine activity IEA--
    About this table

    CMTM8 for ontologies           About GeneDecksing


    (Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
    About This Section

        SABiosciences Custom Pathway-Focused PCR Arrays for CMTM8 

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CMTM8

    1 Interacting protein for CMTM8 (Q8IZV22) via UniProtKB, MINT, and/or STRING
    InteractantInteraction Details
    GeneCardExternal ID(s)
    EGFRP005332MINT-72808 MINT-72809 MINT-72810
    About this table

    1 Gene Ontology (GO) biological process term (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006935 chemotaxis IEA--
    About this table

    CMTM8 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section
    Browse Small Molecules at Sigma-Aldrich
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CMTM8


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Millipore,
    siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
    Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
    About This Section

    Inhib.
    RNA:
         
    Browse for Gene Knock-down Tools from Millipore
    Browse Nano Scale siRNA at Sigma-Aldrich
    Sigma-Aldrich esiRNA and siRNA for CMTM8
    Sigma-Aldrich shRNA for CMTM8
    OriGene 29mer shRNA kits in GFP-retroviral vector: CMTM8
    OriGene shRNA RFP: CMTM8
    OriGene basic RS shRNA: CMTM8
    OriGene siRNA: CMTM8
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of CMTM8 
    miRNA: Sigma-Aldrich microRNA Mimics for CMTM8
    Browse microRNA target validation systems at Sigma-Aldrich 
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of CMTM8 
    1 SABiosciences Assays for microRNA that regulate CMTM8:
    hsa-miR-323-3p
    Clones: Browse FLAG tag genes at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector: CMTM8
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector: CMTM8
    OriGene untagged cDNA clones in CMV expression vector: CMTM8
    OriGene 3'-UTR Clone: CMTM8 
    Browse OriGene MicroRNA Expression Plasmids 
    GenScript cDNA clone with any tag delivered in your preferred vector: CMTM8 
    Primers: OriGene genome-wide validated SYBR primer pairs: CMTM8
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for CMTM8: PPH06062A

    REFSEQ mRNAs for CMTM8 gene: 

    NM_178868.3  

    Additional cDNA sequence: 

    AF474370.2 AY598783.1 BC041390.2 

    3 DOTS entries:

    DT.100023114  DT.100023113  DT.100746081 

    24/45 AceView cDNA sequences (see all 45):

    BM785932 AW024144 CB070190 BQ224486 NM_178868 AF474370 AI197788 BF793712 
    BG216957 BG189930 BU075644 CB243247 BM554032 BU506617 BQ186760 BI791855 
    BM663331 BG213702 BC041390 AV660309 BE869501 BG182013 BG656425 BG193535 

    highest scoring ESTs for CMTM8:

    AI693734 BM663331 BM785932 BU075644 CA775729 CB070190 AA523950 AI185475 AI197788 AI564525 

    Unigene Cluster for CMTM8:

    CKLF-like MARVEL transmembrane domain containing 8
    Hs.154986  [show with all ESTs]
    Unigene Representative Sequence: NM_178868


    GeneLoc Exon Structure

    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000307526(uc003cex.2 uc010hfu.2) ENST00000458535

    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Primers from OriGene and/or SABiosciences )
    About This Section

    CMTM8 expression in normal and diseased human tissues

    1  / 2  / 3

    3 probe-sets matching CMTM8 gene

    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    83528_at2, 3 U95-E 1 0.69 1.00 1.00 1.00 AI693734 0.80 1.00 0.91 1
    235099_at2, 3 U133-B 1 0.55 1.00 -- -- AW080832 0.60 1.00 0.82 1
    235099_at2 U133Plus2 1 0.55 1.00 -- -- -- -- -- -- --
    About this table

    CMTM8 for expression           About GeneDecksing

    Data from Genenote  (Publications) and GNF BioGPS
        About these images
    CMTM8 gene expression
    CMTM8 gene electronic northern expression
    CMTM8 gene sage expression
    About these images

    CGAP SAGE TAG: --

    SOURCE GeneReport for Unigene cluster: Hs.154986

    UniProtKB/Swiss-Prot: CKLF8_HUMAN, Q8IZV2
    Tissue specificity: Highly expressed in liver and pancreas

    Primers: OriGene genome-wide validated SYBR primer pairs: CMTM8
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for CMTM8: PPH06062A
        SABiosciences Custom PCR Arrays for CMTM8 


    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section

    Orthologs for CMTM8 gene from 5/8 species (see all 8)
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    CMTM81   -- CKLF-like MARVEL transmembrane domain containing 8 94.03(n)
    98.84(a)
    485625  XM_542744.2  XP_542744.1 
    chimpanzee
    (Pan troglodytes)
    CMTM81   -- CKLF-like MARVEL transmembrane domain containing 8 100(n)
    100(a)
    460249  XM_516349.2  XP_516349.2 
    cow
    (Bos taurus)
    CMTM81   -- CKLF-like MARVEL transmembrane domain containing 8 91.91(n)
    95.38(a)
    533671  NM_001046358.1  NP_001039823.1 
    rat
    (Rattus norvegicus)
    Cmtm81   -- CKLF-like MARVEL transmembrane domain containing 8 87.28(n)
    91.33(a)
    301045  NM_198754.2  NP_942049.1 
    mouse
    (Mus musculus)
    Cmtm81 , 5 9 (65.20 cM)5
    CKLF-like MARVEL transmembrane domain containing 81, 5 86.71(n)1
    92.49(a)1
    700311  NM_027294.21  NP_081570.11 
     AA4085155  AI7871375  (see all 11)
    About this table        Species with no ortholog for CMTM8

    ENSEMBL Gene Tree for CMTM8 (if available)

    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section
    Paralogs for CMTM8 gene
    MAL2  MALL2  PLLP2  

    CMTM8 for paralogs           About GeneDecksing



    (SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
    About This Section

    10/1454 NCBI SNPs in CMTM8 are shown (see all 1454)
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidChr 3 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ----------
    rs7269111,2
    C,32373731(-) TGCTGC/GGTCCA 1 -- int12Minor allele frequency- G:0.00MN WA 234
    rs7499481,2
    C,F,A,32388001(+) gtgtcT/Cggtga 1 -- int115Minor allele frequency- C:0.23NS EA NA WA 1046
    rs7528981,2
    H32352735(-) acaaaC/Gtgcaa 1 -- int14Minor allele frequency- G:0.00NS EA 412
    rs7641251,2
    C,F,A,32384335(-) CACAAG/CAGTGC 1 -- int116Minor allele frequency- C:0.08NS EA NA 1220
    rs10778681,2
    C,F,32388704(-) AATCAT/CTGTTC 1 -- int113Minor allele frequency- C:0.16NS EA NA WA 1052
    rs13707171,2
    C,F,O,A,H,32354387(-) tggacC/Taataa 1 -- int122Minor allele frequency- T:0.48NS EA NA WA 1698
    rs13707181,2
    C,F,A,32353131(-) CTAGAG/TAGGAA 1 -- int1 trp315Minor allele frequency- T:0.09NS EA NA 1418
    rs13981001,2
    C,F,A,H,32345774(-) TTTCAG/CCCCCC 1 -- int112Minor allele frequency- C:0.42NS EA NA WA 622
    rs13981011,2
    C,F,A,H,32345699(-) taactA/Cagtga 1 -- int1112Minor allele frequency- C:0.23NS EA PA EU CA WA NA 7150
    rs14381821,2
    C,F,H,32365788(-) ATTCAG/ACTACC 1 -- int16Minor allele frequency- A:0.07NS EA NA 492
    About this table

    HapMap Linkage Disequilibrium images for CMTM8 (up to first 250kb)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 3 variations for CMTM8
         2 CNVs: 98277 6169
         1 Indel: 63435

    QIAGEN SeqTarget long-range PCR primers for resequencing CMTM8 

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    CMTM8 for disorders           About GeneDecksing

    OMIM: 607891

    Human Genome Epidemiology (HuGE) Navigator: CMTM8 (2 documents)

    Export disorders and mutations for CMTM8 gene to outside databases

    (Possibly Related Articles in Doctor's Guide)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
    About This Section

    10/12 PubMed articles for CMTM8 gene, integrated from 7 sources (see all 12):
    (articles sorted by number of sources associating them with CMTM8)
    1. Identification of eight genes encoding chemokine-like factor superfamily members 1-8 (CKLFSF1-8) by in silico cloning and experimental validation. (PubMed id 12782130)1, 2, 7 Han W.... Ma D. (2003)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Regulation of EGF receptor signaling by the MARVEL domain-containing protein CKLFSF8. (PubMed id 16263120)1, 7 Jin C....Ma D. (2005)
    4. An alternative splice form of CMTM8 induces apoptosis. (PubMed id 17681841)1, 7 Li D....Wang Y. (2007)
    5. [Effect of novel human chemokine-like factor superfamily 8 on proliferation and EGFR expression of tumor cells] (PubMed id 16806010)1, 7 Huang Y.M. and Du Y. (2006)
    6. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
    7. Findings from bipolar disorder genome-wide association studies replicate in a Finnish bipolar family-cohort. (PubMed id 19308021)1 Ollila H.M....Paunio T. (2009)
    8. Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder. (PubMed id 18711365)1 Ferreira M.A....Craddock N. (2008)
    9. CMTM8 induces caspase-dependent and -independent apoptosis through a mitochondria-mediated pathway. (PubMed id 17149703)1 Jin C....Ma D. (2007)
    10. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 152189 HGNC: 19179 AceView: CKLFSF8 Ensembl:ENSG00000170293 euGenes: HUgn152189
    ECgene: CMTM8 H-InvDB: CMTM8

    (According to HUGE)
    About This Section
      --

    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
      --

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from XenneX, Inc.)
    About This Section
    Patent Information for CMTM8 gene:
    Search GeneIP for patents involving CMTM8

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
    Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or Enzo Life Sciences)
    About This Section

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     Browse ELISAs and CLIAs at Uscn
           

    GeneCards Homepage - Last full update: 31 Dec 2010 - Incremental updates: 9 Jan 2011 , 10 Jan 2011

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