COX8A Gene
protein-coding GIFtS : 49
GC11P060070
cytochrome c oxidase subunit VIIIA (ubiquitous) (Previous names: cytochrome c oxidase subunit VIII, cytochrome c oxidase subunit 8A (ubiquitous) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: COX8 )
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Aliases & Descriptionsfor COX8A gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions cytochrome c oxidase subunit VIIIA (ubiquitous)1 2 cytochrome c oxidase subunit 8A (ubiquitous)1 2 COX8L1 2 3 cytochrome c oxidase subunit VIII1 2 COX82 3 5 VIII-L1 2 COX8-21 2 Cytochrome c oxidase polypeptide VIII-liver/heart2 3 VIII1 2 Cytochrome c oxidase subunit 8-22 3 COX1 2 cytochrome c oxidase subunit 8A, mitochondrial2
Export aliases for COX8A gene to outside databases Previous GC identifers: GC11P063518 GC11P063498 GC11P063742
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Summariesfor COX8A gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for COX8A : The protein encoded by this gene is the terminal enzyme of the respiratory chain, coupling the transfer of electrons from cytochrome c to molecular oxygen, with the concomitant production of a proton electrochemical gradient across the inner mitochondrial membrane. In addition to 3 mitochondrially encoded subunits, which perform the catalytic function, the eukaryotic enzyme contains nuclear-encoded smaller subunits, ranging in number from 4 in some organisms to 10 in mammals. It has been proposed that nuclear-encoded subunits may be involved in the modulation of the catalytic function. This gene encodes one of the nuclear-encoded subunits. (provided by RefSeq) UniProtKB/Swiss-Prot: COX8A_HUMAN, P10176 Function : This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase inmitochondrial electron transport
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Genomic Viewsfor COX8A gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the COX8A gene promoter: E2F-3a E2F-5 E2F-4 E2F-2 E2F-1 E2F YY1 STAT3 STAT1 STAT1alpha Other transcription factors Search SABiosciences Chromatin IP Primers for COX8A Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for COX8A
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 11q12-q13 Ensembl cytogenetic band: 11q13.1 HGNC cytogenetic band: 11q12-q13 COX8A Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11P060070: view genomic region
(about GC identifiers )
Start:
60,070,789 bp from pter
End:
60,072,725 bp from pter
Size:
1,937 bases
Orientation:
plus strand
1 alternative location : Chr 11+ 63,742,079-63,744,014
RefSeq DNA sequence: NC_000011.9 NT_167190.1
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Proteinsfor COX8A gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: COX8A_HUMAN, P10176 (See
protein sequence )Recommended Name: Cytochrome c oxidase subunit 8A, mitochondrial precursor Size : 69 amino acids; 7579 Da
Subcellular location : Mitochondrion inner membrane
Secondary accessions : P15955Explore the universe of human proteins at neXtProt for COX8A: NX_P10176
REFSEQ proteins: NP_004065.1 ENSEMBL proteins: ENSP00000321260 Human Recombinant Proteins 4 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
COX8A for ontologies About GeneDecksing Antibodies for COX8A: Assays for COX8A:
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Protein
Domains/ Familiesfor COX8A gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
COX8A for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P10176 ProtoNet protein and cluster: P10176
1 Blocks protein family : IPB003205 Cytochrome oxidase c UniProtKB/Swiss-Prot: COX8A_HUMAN, P10176 Similarity : Belongs to the cytochrome c oxidase VIII family
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Gene Functionfor COX8A gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: COX8A_HUMAN, P10176 Function : This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase inmitochondrial electron transport
1 Gene Ontology (GO) molecular function term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0004129 cytochrome-c oxidase activity
IEA --
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COX8A for ontologies About GeneDecksing
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Pathways & Interactionsfor COX8A gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
COX8A for pathways About GeneDecksing 2 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathways for COX8A 5/6 Kegg Pathways (Kegg details for COX8A) (see all 6 ): SABiosciences Pathway-Focused PCR Arrays including COX8A : PAHS-008A PAHS-3401A Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for COX8A Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for COX8A 5/31 Interacting proteins for COX8A (ENSP00000321260 3 ) via UniProtKB, MINT, and/or STRING (see all 31 )About this table 2 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006091 generation of precursor metabolites and energy
TAS 2543673 GO:0022904 respiratory electron transport chain
TAS --
About this table
COX8A for ontologies About GeneDecksing
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Drugs & Compoundsfor COX8A gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for COX8A
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Transcriptsfor COX8A gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for COX8A gene: NM_004074.2
Additional cDNA sequence: AK311934.1 BC063025.1 BT009803.1 CR407687.1 CR609784.1
24 DOTS entries : DT.100886580 DT.101971358 DT.100045241 DT.120741946 DT.91673279 DT.100045240 DT.100886564 DT.219944
DT.100886572 DT.100886573 DT.100886558 DT.97824342 DT.100886562 DT.120741903 DT.120741959 DT.100673331 DT.40107023 DT.95149702 DT.95149708 DT.100044586 DT.100044589 DT.120741910 DT.95333829 DT.97856606 24/1333 AceView cDNA sequences (see all 1333 ):
BM926040 BQ927020 BI093185 BG828440 AY177200 CB121525 BI754560 BQ218109 CR617783 BM918158 BE045570 BQ926290 F30551 CB119220 BU785580 BM755291 BE877230 AI376960 BI113833 CR617727 BU169848 AI858087 T16501 AI280913
highest scoring ESTs for COX8A :AI525665 AA040592 AA056340 AA078804 AA078805 AA079023 AA086414 AA088250 AA088649 AA099575 Unigene Cluster for COX8A:
Cytochrome c oxidase subunit VIIIA (ubiquitous) Hs.433901 [show with all ESTs ] Unigene Representative Sequence: CD555987 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000314133 (uc001nye.2 )
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Expression for COX8A gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section COX8A expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching COX8A gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
38080_at2 , 3
U95-A
1
0.50
1.00
1.00
1.00
AI525665
1.00
1.00
1.00
1
201119_s_at2 , 3
U133-A
1
0.46
1.00
--
--
NM_004074
0.60
1.00
0.82
1
201119_s_at2
U133Plus2
1
0.46
1.00
--
--
--
--
--
--
--
About this table
COX8A for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTGACCTCCT SOURCE GeneReport for Unigene cluster: Hs.433901 Expression variation in blood from EXPOLDB for COX8A
SABiosciences Expression via Pathway-Focused PCR Arrays including COX8A : PAHS-008A PAHS-3401A
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Orthologsfor COX8A gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for COX8A gene from 5 species
About this table Species with no ortholog for COX8A ENSEMBL Gene Tree for COX8A (if available)
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Paralogsfor COX8A gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section --
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Genomic Variantsfor COX8A gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 11 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for COX8A (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for COX8A: --
QIAGEN SeqTarget long-range PCR primers for resequencing COX8A
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Disorders & Mutationsfor COX8A gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
COX8A for disorders About GeneDecksing
OMIM: 123870 Human Genome Epidemiology (HuGE) Navigator: COX8A (1 document)Export disorders and mutations for COX8A gene to outside databases
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Medical Newsfor COX8A gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor COX8A gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/14 PubMed articles for COX8A gene, integrated from 7 sources (see all 14 ): (articles sorted by number of sources associating them with COX8A) A gene specifying subunit VIII of human cytochrome c oxidase is localized to chromosome 11 and is expressed in both muscle and non- muscle tissues. (PubMed id 2543673) 1 , 2 , 3 Rizzuto R.... Schon E.A. (1989) Human heart cytochrome c oxidase subunit VIII. Purification and determination of the complete amino acid sequence. (PubMed id 2847943) 1 , 2 , 3 van Kuilenburg A.B.P....van Beeumen J.J. (1988) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) A third isoform of cytochrome c oxidase subunit VIII is present in mammals. (PubMed id 12909344) 1 , 7 Huettemann M.... Grossman L.I. (2003) Genetic variants in nuclear-encoded mitochondrial gen es influence AIDS progression. (PubMed id 20877624) 1 Hendrickson S.L....O'Brien S.J. (2010) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Peptide nucleic acid delivery to human mitochondria. (PubMed id 10637443) 1 Chinnery P.F....Lightowlers R.N. (1999) Adaptive evolution of cytochrome c oxidase subunit VIII in anthropoid primates. (PubMed id 12716970) 7 Goldberg A....Grossman L.I. (2003) Sequence of the cDNA for the liver/non-muscle isoform of mouse cytochrome-c oxidase subunit VIII. (PubMed id 8809110) 7 Makris G.J. and Lomax M.I. (1996) Structure and chromosomal location of the bovine gene for the heart muscle isoform of cytochrome c oxidase subunit VIII. (PubMed id 7766994) 7 Lomax M.I....Womack J.E. (1995)
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External Searches for COX8A gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing COX8A gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing COX8A gene
(According to HUGE )
About This Section --
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Specialized Databases showing COX8A gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for COX8A gene: Search GeneIP for patents involving COX8A GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor COX8A gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for COX8A
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