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Aliases & Descriptionsfor CRTAM gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions cytotoxic and regulatory T cell molecule1 2 Class-I MHC-restricted T-cell-associated molecule2 3 cytotoxic and regulatory T-cell molecule2 class I MHC restricted T cell associated molecule2 class-I MHC-restricted T cell associated molecule2
Export aliases for CRTAM gene to outside databases Previous GC identifers: GC11P124710 GC11P124222 GC11P122743 GC11P122246 GC11P122214
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Summariesfor CRTAM gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for CRTAM : The CRTAM gene is upregulated in CD4 (see MIM 186940)-positive and CD8 (see CD8A; MIM 186910)-positive T cells and encodes a type I transmembrane protein with V and C1-like Ig domains (Yeh et al., 2008 (PubMed 18329370)).(supplied by OMIM) UniProtKB/Swiss-Prot: CRTAM_HUMAN, O95727 Function : Interaction with CADM1 promotes natural killer (NK) cell cytotoxicity and interferon-gamma (IFN-gamma)secretion by CD8+ cells in vitro as well as NK cell-mediated rejection of tumors expressing CADM3 in vivo
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Genomic Viewsfor CRTAM gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CRTAM gene promoter: c-Rel NF-kappaB NF-kappaB1 RelA NF-kappaB2 RORalpha1 IRF-1 AML1a Other transcription factors Search SABiosciences Chromatin IP Primers for CRTAM Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 11q24.1 Ensembl cytogenetic band: 11q24.1 HGNC cytogenetic band: 11q24.1 CRTAM Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11P118652: view genomic region
(about GC identifiers )
Start:
118,652,105 bp from pter
End:
118,686,168 bp from pter
Size:
34,064 bases
Orientation:
plus strand
1 alternative location : Chr 11+ 122,709,206-122,743,334
RefSeq DNA sequence: NC_000011.9 NT_033899.8
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Proteinsfor CRTAM gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: CRTAM_HUMAN, O95727 (See
protein sequence )Recommended Name: Cytotoxic and regulatory T-cell molecule precursor Size : 393 amino acids; 44641 Da
Subunit : Interacts with CADM1
Subcellular location : Membrane; Single-pass type I membrane protein (Potential)
Sequence caution : Sequence=BAD93067.1; Type=Erroneous initiation;
Secondary accessions : Q59EI1 Q6IRX2Alternative splicing : 2 isoforms : O95727-1 O95727-2 Explore the universe of human proteins at neXtProt for CRTAM: NX_O95727
REFSEQ proteins: NP_062550.2 ENSEMBL proteins: ENSP00000227348 Human Recombinant Proteins 2 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005886 plasma membrane
TAS -- GO:0016021 integral to membrane
IEA --
About this table
CRTAM for ontologies About GeneDecksing Antibodies for CRTAM: Assays for CRTAM:
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Protein
Domains/ Familiesfor CRTAM gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CRTAM for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry O95727 ProtoNet protein and cluster: O95727
UniProtKB/Swiss-Prot: CRTAM_HUMAN, O95727 Similarity : Belongs to the nectin familySimilarity : Contains 1 Ig-like C2-type (immunoglobulin-like) domainSimilarity : Contains 1 Ig-like V-type (immunoglobulin-like) domain
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Gene Functionfor CRTAM gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: CRTAM_HUMAN, O95727 Function : Interaction with CADM1 promotes natural killer (NK) cell cytotoxicity and interferon-gamma (IFN-gamma)secretion by CD8+ cells in vitro as well as NK cell-mediated rejection of tumors expressing CADM3 in vivo
2 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
About this table
CRTAM for ontologies About GeneDecksing Animal Models: 2 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Crtam) :
CRTAM for phenotypes About GeneDecksing
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Pathways & Interactionsfor CRTAM gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for CRTAM SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for CRTAM 1 Interacting protein for CRTAM (ENSP00000227348 3 ) via UniProtKB, MINT, and/or STRING About this table 5/9 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 9 ):
About this table
CRTAM for ontologies About GeneDecksing
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Drugs & Compoundsfor CRTAM gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for CRTAM
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Transcriptsfor CRTAM gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for CRTAM gene: NM_019604.2
Additional cDNA sequence: AB209830.1 AF001622.1 AK293470.1 AK313578.1 BC070266.1
2 DOTS entries : DT.424789 DT.100764176
24/26 AceView cDNA sequences (see all 26 ):
AA322525 BM919441 BX118379 CA309993 NM_019604 BF434560 AA322787 AW137831 CD640439 BF445107 CD641796 BX488905 CD639624 CD365583 BC070266 AF001622 BG058725 BX488047 AI693616 CK004240 BG205621 BG231751 CD640427 CD642037
highest scoring ESTs for CRTAM :AF001622 AI693616 AW137831 BC070266 BF434560 BF445107 BG058725 BG205621 BG231751 BX118379 Unigene Cluster for CRTAM:
Cytotoxic and regulatory T cell molecule Hs.159523 [show with all ESTs ] Unigene Representative Sequence: BC070266 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000227348 (uc001pyj.2 uc001pyk.2 )
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Expression for CRTAM gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section CRTAM expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching CRTAM gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
36389_at2 , 3
U95-A
1
1.00
1.00
1.00
1.00
AF001622
1.00
1.00
1.00
1
206914_at2 , 3
U133-A
1
0.73
1.00
--
--
NM_019604
0.60
1.00
0.82
1
206914_at2
U133Plus2
1
0.73
1.00
--
--
--
--
--
--
--
About this table
CRTAM for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CCTTTCTTTT SOURCE GeneReport for Unigene cluster: Hs.159523 Expression variation in blood from EXPOLDB for CRTAM
UniProtKB/Swiss-Prot: CRTAM_HUMAN, O95727 Tissue specificity : In the immune system, expression is restricted to activated class-I MHC-restricted cells, includingNKT and CD8 cells. Strongly expressed in spleen, thymus, small intestine, peripheral blood leukocyte, and in Purkinje neurons in cerebellum. Expressed at much lower levels in testis, ovary, colon, lung and lymphoid tissues
SABiosciences Custom PCR Arrays for CRTAM
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Orthologsfor CRTAM gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for CRTAM gene from 5/6 species (see all 6 )
About this table Species with no ortholog for CRTAM ENSEMBL Gene Tree for CRTAM (if available)
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Paralogsfor CRTAM gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section --
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Genomic Variantsfor CRTAM gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 11 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for CRTAM (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for CRTAM: --
QIAGEN SeqTarget long-range PCR primers for resequencing CRTAM
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Disorders & Mutationsfor CRTAM gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CRTAM for disorders About GeneDecksing
OMIM: 612597 Export disorders and mutations for CRTAM gene to outside databases
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Medical Newsfor CRTAM gene (Possibly Related Articles in
Doctor's Guide )
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Publicationsfor CRTAM gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 9 PubMed articles for CRTAM gene integrated from 7 sources : (articles sorted by number of sources associating them with CRTAM) Human class-I restricted T cell associated molecule is highly expressed in the cerebellum and is a marker for activated NKT and CD8+ T lymphocytes. (PubMed id 16300832) 1 , 2 , 3 Patino-Lopez G.... Zlotnik A. (2006) A molecular analysis of NKT cells: identification of a class-I restricted T cell-associated molecule (CRTAM). (PubMed id 10811014) 1 , 2 , 3 Kennedy J.... Zlotnik A. (2000) Nectin-like protein 2 defines a subset of T-cell zone dendritic cells and is a ligand for class-I-restricted T-cell-associated molecule. (PubMed id 15781451) 1 , 2 Galibert L.... Yan W. (2005) The tumor suppressor TSLC1/NECL-2 triggers NK-cell and CD8+ T-cell responses through the cell-surface receptor CRTAM. (PubMed id 15811952) 1 , 2 Boles K.S.... Colonna M. (2005) Characterization of CRTAM gene promoter: AP-1 transcr iption factor control its expression in human T CD8 lymphocytes. (PubMed id 19695707) 1 , 7 Valle-Rios R....Ortiz-Navarrete V. (2009) Regulation of a late phase of T cell polarity and effector functions by Crtam. (PubMed id 18329370) 1 Yeh J.H....Chan A.C. (2008) hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965) 1 Lamesch P.... Vidal M. (2007) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for CRTAM gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CRTAM gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CRTAM gene
(According to HUGE )
About This Section --
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Specialized Databases showing CRTAM gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for CRTAM gene: Search GeneIP for patents involving CRTAM GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CRTAM gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for CRTAM
ELISAs and CLIAs for CRTAM
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