Aliases &
Descriptions
for CT45A3 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
About This Section
|
| Aliases & Descriptions |
|---|
| cancer/testis antigen family 45, member A31 2 | | OTTHUMP000000240832 | | CT45-31 2 3 | | RP13-36C9.12 | | CT45.31 2 5 | | OTTHUMP000002217612 | | Cancer/testis antigen 45-32 3 | | cancer/testis antigen family 45 member A32 | | Cancer/testis antigen 45A32 3 | | OTTHUMP000002217602 | | cancer/testis antigen CT45-32 | | |
Export aliases for CT45A3 gene to outside databasesPrevious GC identifer: GC0XP134712 |
Summaries
for CT45A3 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for CT45A3 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60),
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences)
About This Section
|
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for CT45A3
Other transcription factors
Search SABiosciences Chromatin IP Primers for CT45A3
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays  |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: Xq26.3 Ensembl cytogenetic band: Xq26.3 HGNC cytogenetic band: Xq26.3CT45A3 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome X GeneLoc Exon Structure GeneLoc location for GC0XP134869: view genomic region
(about GC identifiers)
Start:
|
134,869,956 bp from pter |
End:
|
134,893,393 bp from pter |
Size:
|
23,438 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000023.10 NT_011786.16
|
Proteins
for CT45A3 gene
(According to
1UniProtKB,
neXtProt,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological, and/or
ProSpec,
Biochemical Assays by
Millipore,
Sigma-Aldrich,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene,
Antibodies by
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals, and/or
Epitomics)
About This Section
|
UniProtKB/Swiss-Prot: CT453_HUMAN, Q8NHU0 (See
protein sequence)Recommended Name: Cancer/testis antigen family 45 member A3 Size: 189 amino acids; 21331 Da
Secondary accessions: B2RU20 B7ZMC9Explore the universe of human proteins at neXtProt for CT45A3: NX_Q8NHU0
REFSEQ proteins: NP_001017435.1
ENSEMBL proteins: ENSP00000421659 ENSP00000359769 ENSP00000426216 ENSP00000411223 ENSP00000394635
Human Recombinant Proteins
Antibodies for CT45A3:
Assays for CT45A3: |
Protein
Domains/
Families
for CT45A3 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
CT45A3 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q8NHU0ProtoNet protein and cluster: Q8NHU0 |
Gene Function
for CT45A3 gene
(According to UniProtKB,
IUBMB,and/or
Genatlas, Animal models from MGI Dec 24 2010,
shRNA from
OriGene,
Sigma-Aldrich,
RNAi from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Clones from Millipore,
Sigma-Aldrich,
OriGene,
GenScript,
Sino Biological,
Cell Lines from GenScript,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene.)
About This Section
|
|
Pathways & Interactions
for CT45A3 gene
(Pathways according to
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
PCR Arrays from
SABiosciences,
Proteins Network according to
SABiosciences,
Sigma-Aldrich,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene).
About This Section
|
SABiosciences Custom Pathway-Focused PCR Arrays for CT45A3
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CT45A3
|
Drugs & Compounds
for CT45A3 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for CT45A3
|
Transcripts
for CT45A3 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Tagged/untagged cDNA clones from
OriGene,
Sigma-Aldrich,
GenScript,
Primers from
OriGene and/or
SABiosciences)
About This Section
|
REFSEQ mRNAs for CT45A3 gene: NM_001017435.1 Additional cDNA sequence: AY743711.1 BC028711.2 BC140735.1 BC140926.1 BC144437.1 6 DOTS entries: DT.95369049 DT.121288022 DT.103147 DT.121278210 DT.121278213 DT.121307899 Unigene Cluster for CT45A3: Cancer/testis antigen family 45, member A3 Hs.535080 [show with all ESTs]Unigene Representative Sequence: BC028711
GeneLoc Exon Structure
5 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000485366 ENST00000370734(uc004ezc.2) ENST00000461216 ENST00000455625
ENST00000443882
|
Expression
for CT45A3 gene
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Primers from
OriGene and/or
SABiosciences
)
About This Section
| CT45A3 expression in normal and diseased human tissues
1 / 2 4 probe-sets matching CT45A3 gene
Affymetrix
probe-set |
Array |
GeneAnnot data |
GeneNote data |
GeneTide data |
| # genes |
Sensitivity |
Specificity |
Correlation |
Length |
Gb_Accession |
Consensus |
Uniqueness |
Score |
Rank |
| 77230_at2
|
U95-D |
7 |
0.94 |
0.29 |
1.00 |
1.00 |
-- |
-- |
-- |
-- |
-- |
| 235700_at2
|
U133-B |
7 |
0.91 |
0.21 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
| 1567912_s_at2
|
U133Plus2 |
6 |
1.00 |
0.20 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
| 235700_at2
|
U133Plus2 |
7 |
0.91 |
0.21 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
About this table
CT45A3 for expression About GeneDecksing
Data from
Genenote
(Publications) and GNF BioGPS
About these images
About these images
CGAP SAGE TAG: CTATTCCACC
SOURCE GeneReport for Unigene cluster: Hs.535080
UniProtKB/Swiss-Prot: CT453_HUMAN, Q8NHU0Tissue specificity: Testis specific. Expressed in cancer cell lines
SABiosciences Custom PCR Arrays for CT45A3
|
Orthologs
for CT45A3 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
| ENSEMBL Gene Tree for CT45A3 (if available) |
Paralogs
for CT45A3 gene(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| Paralogs for CT45A3 gene
- XX-FW88277B6.1 RP13-36C9.1 CT45-4 CT45-6 CT45A22 INTS62 CT45A52 CT45A12
- CT45A42 SAGE12 CT45A62 DDX26B2
CT45A3 for paralogs About GeneDecksing
|
Genomic Variants
for CT45A3 gene(SNPs according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section
|
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 15 variations for CT45A3
14 CNVs: 31563 33178 74057 37000 0669 83765 96995 4174 74056 83764 52935 74058 3256 96994
1 Inversion: 37350 |
Disorders & Mutations
for CT45A3 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
LSDB, HGMD, GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
CT45A3 for disorders About GeneDecksing
OMIM: 300794
Export disorders and mutations for CT45A3 gene to outside databases
|
Medical News
for CT45A3 gene(Possibly Related Articles in
Doctor's Guide)
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| -- |
Publications
for CT45A3 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6UniProtKB/TrEMBL, and/or
7Novoseek)
About This Section
|
6 PubMed articles for CT45A3 gene integrated from 7 sources:
(articles sorted by number of sources associating them with CT45A3)- Identification of cancer/testis-antigen genes by massively parallel signature sequencing. (PubMed id 15905330)1, 2, 3 Chen Y.-T.... Simpson A.J.G. (2005)
- hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)
- The DNA sequence of the human X chromosome. (PubMed id 15772651)2 Ross M.T.... Bentley D.R. (2005)
- Transcriptome analysis of human gastric cancer. (PubMed id 16341674)1 Oh J.H....Kim N.S. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for CT45A3 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
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|
|
Genome Databases showing CT45A3 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing CT45A3 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CT45A3 gene(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for CT45A3 gene:
Search GeneIP for patents involving CT45A3
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for CT45A3 gene(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or
Enzo Life Sciences)
About This Section
|
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