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Aliases & Descriptionsfor CTBS gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions chitobiase, di-N-acetyl-1 2 CTB2 3 5 OTTHUMP000000115702 di-N-acetylchitobiase2 EC 3.2.1.-3
Export aliases for CTBS gene to outside databases Previous GC identifers: GC01P085516 GC01M084156 GC01M084307 GC01M084442 GC01M084732 GC01M085018
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Summariesfor CTBS gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for CTBS : Chitobiase is a lysosomal glycosidase involved in degradation of asparagine-linked oligosaccharides on glycoproteins (Aronson and Kuranda, 1989 (PubMed 2531691)).(supplied by OMIM) UniProtKB/Swiss-Prot: DIAC_HUMAN, Q01459 Function : Involved in the degradation of asparagine-linked glycoproteins. Hydrolyze of N-acetyl-beta-D-glucosamine(1-4)N-acetylglucosamine chitobiose core from the reducing end of the bond, it requires prior cleavage by glycosylasparaginase Gene Wiki entry for CTBS
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Genomic Viewsfor CTBS gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CTBS gene promoter: NF-kappaB NF-kappaB1 LCR-F1 POU3F2 RORalpha1 GCNF-2 GCNF-1 SREBP-1c SREBP-1b SREBP-1a Other transcription factors Search SABiosciences Chromatin IP Primers for CTBS Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for CTBS
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1p22 Ensembl cytogenetic band: 1p22.3 HGNC cytogenetic band: 1p22 CTBS Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M083128: view genomic region
(about GC identifiers )
Start:
83,128,864 bp from pter
End:
83,150,219 bp from pter
Size:
21,356 bases
Orientation:
minus strand
1 alternative location : Chr 1- 85,018,804-85,040,163
RefSeq DNA sequence: NC_000001.10 NT_032977.9
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Proteinsfor CTBS gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: DIAC_HUMAN, Q01459 (See
protein sequence )Recommended Name: Di-N-acetylchitobiase precursor Size : 385 amino acids; 43760 Da
Subcellular location : LysosomeExplore the universe of human proteins at neXtProt for CTBS: NX_Q01459
REFSEQ proteins: NP_004379.1 ENSEMBL proteins: ENSP00000359664 ENSP00000359659 Human Recombinant Proteins 1 Gene Ontology (GO) cellular component term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005764 lysosome
IEA --
About this table
CTBS for ontologies About GeneDecksing Antibodies for CTBS: Assays for CTBS:
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Protein
Domains/ Familiesfor CTBS gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CTBS for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q01459 ProtoNet protein and cluster: Q01459
1 Blocks protein family : IPB001579 Glycoside hydrolase UniProtKB/Swiss-Prot: DIAC_HUMAN, Q01459 Similarity : Belongs to the glycosyl hydrolase 18 family
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Gene Functionfor CTBS gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: DIAC_HUMAN, Q01459 Function : Involved in the degradation of asparagine-linked glycoproteins. Hydrolyze of N-acetyl-beta-D-glucosamine(1-4)N-acetylglucosamine chitobiose core from the reducing end of the bond, it requires prior cleavage by glycosylasparaginase Enzyme Number (IUBMB): EC 3.2.1.-
Genatlas biochemistry entry for CTBS :lysosomal chitobiase,involved in degradation of asparagine-linked glycoproteins 3 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
-- -- GO:0004568 chitinase activity
IEA -- GO:0043169 cation binding
IEA --
About this table
CTBS for ontologies About GeneDecksing
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Pathways & Interactionsfor CTBS gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
CTBS for pathways About GeneDecksing 1 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathway for CTBS SABiosciences Custom Pathway-Focused PCR Arrays for CTBS Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for CTBS Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CTBS 3 Interacting proteins for CTBS (ENSP00000359664 3 ) via UniProtKB, MINT, and/or STRING About this table 3 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005975 carbohydrate metabolic process
IEA -- GO:0006032 chitin catabolic process
IEA -- GO:0009313 oligosaccharide catabolic process
IEA --
About this table
CTBS for ontologies About GeneDecksing
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Drugs & Compoundsfor CTBS gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for CTBS
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Transcriptsfor CTBS gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for CTBS gene: NM_004388.2
Additional cDNA sequence: AK075423.1 AK298703.1 AK314640.1 BC024007.2 BC065191.1 BC096752.1 BC126333.1 BC126335.1 CR590327.1 CR595959.1 CR602282.1 CR615615.1 M95767.1
8 DOTS entries : DT.95172057 DT.410826 DT.95297552 DT.121427673 DT.92443352 DT.100782215 DT.121427721 DT.97795709
24/423 AceView cDNA sequences (see all 423 ):
AI911433 BX956979 AW340694 H15938 BI467209 AI368858 BG008942 M95767 CA425643 AA974553 BX109756 AI499049 AI346848 BM826029 CB121330 BT006823 AA923637 AI601142 AA878529 CR590327 AA167380 AA371357 CR615615 BF109470
highest scoring ESTs for CTBS :M95767 AI269096 AI547276 AK075423 AL530653 BC024007 BC065191 BG703950 BG704290 BG719820 Unigene Cluster for CTBS:
Chitobiase, di-N-acetyl- Hs.513557 [show with all ESTs ] Unigene Representative Sequence: NM_004388 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for CTBS ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c SP1 :   -                   SP2 :                     SP3 :   -     -               SP4 :       -              
About this scheme ECgene alternative splicing isoforms for CTBS 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000477677 (uc001dkd.2 uc001dkb.2 ) ENST00000465118 ENST00000370630 (uc001dkc.2 uc001dka.2 )ENST00000370625
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Expression for CTBS gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section CTBS expression in normal and diseased human tissues 1 / 2 / 3
6 probe-sets matching CTBS gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
37855_at2 , 3
U95-A
1
1.00
1.00
0.98
0.97
M95767
1.00
0.90
0.95
1
61307_at2 , 3
U95-C
1
0.88
1.00
0.98
1.03
AI547276
0.80
0.88
0.84
1
218923_at2 , 3
U133-A
1
1.00
1.00
--
--
AW304174
0.60
0.83
0.73
1
218924_s_at2 , 3
U133-A
1
0.91
1.00
--
--
NM_004388
0.60
0.83
0.73
1
218923_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
218924_s_at2
U133Plus2
1
0.91
1.00
--
--
--
--
--
--
--
About this table
CTBS for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GAAAGTGGAG SOURCE GeneReport for Unigene cluster: Hs.513557 Expression variation in blood from EXPOLDB for CTBS
SABiosciences Custom PCR Arrays for CTBS
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Orthologsfor CTBS gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for CTBS gene from 5/9 species (see all 9 )
About this table Species with no ortholog for CTBS ENSEMBL Gene Tree for CTBS (if available)
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Paralogsfor CTBS gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section --
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Genomic Variantsfor CTBS gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 1 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for CTBS (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for CTBS: --
QIAGEN SeqTarget long-range PCR primers for resequencing CTBS
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Disorders & Mutationsfor CTBS gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CTBS for disorders About GeneDecksing
OMIM: 600873 Export disorders and mutations for CTBS gene to outside databases
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Medical Newsfor CTBS gene (Possibly Related Articles in
Doctor's Guide )
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Publicationsfor CTBS gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/11 PubMed articles for CTBS gene, integrated from 7 sources (see all 11 ): (articles sorted by number of sources associating them with CTBS) Lysosomal chitobiase (CTB) and the G-protein gamma 5 subunit (GNG5) genes co-localize to human chromosome 1p22. (PubMed id 7606925) 1 , 3, 7 Ahmad W....Aronson N.N. (1995) Structure of the human gene for lysosomal di-N-acetylchitobiase. (PubMed id 10336991) 1 , 2 Liu B.... Aronson N.N. Jr. (1999) Characterization of the cDNA and genomic sequence of a G protein gamma subunit (gamma 5). (PubMed id 1549114) 1 , 3 Fisher K.J. and Aronson N.N. (1992) Cloning and expression of the cDNA sequence encoding the lysosomal glycosidase di-N-acetylchitobiase. (PubMed id 1527079) 1 , 2 Fisher K.J. and Aronson N.N. Jr. (1992) Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry. (PubMed id 19159218) 2 Chen R.... Zou H. (2009) Optimum substrate size and specific anomer requirements for the reducing-end glycoside hydrolase di-N-acetylchitobiase. (PubMed id 16794344) 1 Aronson N.N. and Halloran B.A. (2006) A novel dynamin-associating molecule, formin-binding protein 17, induces tubular membrane invaginations and participates in endocytosis. (PubMed id 15252009) 1 Kamioka Y....Mochizuki N. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) N-acetyl beta-D-glucosaminidase is not attached to human sperm membranes through the glycosylphosphatidyl inositol (GPI)-anchor. (PubMed id 11907625) 1 Hutchinson T....Pereira B.M. (2002) Rat liver chitobiase: purification, properties, and role in the lysosomal degradation of Asn-linked glycoproteins. (PubMed id 2751306) 1 Aronson N.N....Kuranda M.J. (1989)
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External Searches for CTBS gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CTBS gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CTBS gene
(According to HUGE )
About This Section --
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Specialized Databases showing CTBS gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for CTBS gene: Search GeneIP for patents involving CTBS GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CTBS gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for CTBS
ELISAs and CLIAs for CTBS
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