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DHRS13 Gene

protein-coding   GIFtS: 41

GC17M023433
dehydrogenase/reductase (SDR family) member 13
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Products    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases & Descriptions
dehydrogenase/reductase (SDR family) member 131 2     OTTHUMP000001635222
SDR7C51 2     short chain dehydrogenase/reductase family 7C, member 52
MGC232801 2     EC 1.1.-.-3
dehydrogenase/reductase SDR family member 132     

External Ids:    HGNC: 283261   Entrez Gene: 1470152   Ensembl: ENSG000001675367   UniProtKB: Q6UX073   

Export aliases for DHRS13 gene to outside databases

Previous GC identifers: GC17M024249 GC17M027224


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: DHR13_HUMAN, Q6UX07
Function: Putative oxidoreductase (Potential)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for DHRS13
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for DHRS13

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for DHRS13 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q11.2   Ensembl cytogenetic band:  17q11.2   HGNC cytogenetic band: 17q11.2

DHRS13 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DHRS13 gene location

GeneLoc gene densities for chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M023433:  view genomic region     (about GC identifiers)

Start:
23,433,016 bp from pter
End:
23,438,305 bp from pter
Size:
5,290 bases
Orientation:
minus strand

1 alternative location:
Chr17- 27,224,799-27,230,089     
RefSeq DNA sequence:
NC_000017.10  NT_010799.15  

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
About This Section

UniProtKB/Swiss-Prot: DHR13_HUMAN, Q6UX07 (See protein sequence)
Recommended Name: Dehydrogenase/reductase SDR family member 13 precursor  
Size: 377 amino acids; 40849 Da
Subcellular location: Secreted (Potential)
Secondary accessions: Q96BH7
Alternative splicing: 2 isoforms:  Q6UX07-1   Q6UX07-2   

Explore the universe of human proteins at neXtProt for DHRS13: NX_Q6UX07 

Post-translational modifications:

  • Phosphorylated upon DNA damage, probably by ATM or ATR (By similarity)1


  • REFSEQ proteins: NP_653284.2  

    ENSEMBL proteins: 
    ENSP00000378361 ENSP00000412826 ENSP00000368173 


    Human Recombinant Proteins 
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    1 Gene Ontology (GO) cellular component term (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576 extracellular region IEA--
    About this table

    DHRS13 for ontologies           About GeneDecksing



    Antibodies for DHRS13: 
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    Browse ELISAs and CLIAs at Uscn 


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    DHRS13 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR002347 Glc/ribitol_DH
     IPR002198 DH_sc/Rdtase_SDR
     IPR016040 NAD(P)-bd_dom

    Graphical View of Domain Structure for InterPro Entry Q6UX07

    ProtoNet protein and cluster: Q6UX07

    2 Blocks protein families:
    IPB002198 Short-chain dehydrogenase/reductase SDR
    IPB002347 Glucose/ribitol dehydrogenase family signature


    UniProtKB/Swiss-Prot: DHR13_HUMAN, Q6UX07
    Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family


    (According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
    About This Section

    UniProtKB/Swiss-Prot: DHR13_HUMAN, Q6UX07
    Function: Putative oxidoreductase (Potential)
    Enzyme Number (IUBMB): EC 1.1.-.- 

    Inhib.
    RNA:
        
    Browse for Gene Knock-down Tools from Millipore
    Browse Nano Scale siRNA at Sigma-Aldrich
    Sigma-Aldrich siRNA Panels and esiRNA and siRNA for DHRS13
    Sigma-Aldrich shRNA for DHRS13
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    miRNA:Sigma-Aldrich microRNA Mimics for DHRS13
    Browse microRNA target validation systems at Sigma-Aldrich 
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of DHRS13 
    Search SABiosciences for Assays for microRNAs that regulate DHRS13

    Gene
    Editing:
    Browse CompoZr Knockout ZFN at Sigma-Aldrich 

    Clones:Browse Clones for the Expression of Recombinant Proteins Available from Millipore
    Browse iPSC Reprogramming Factors at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector: DHRS13
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector: DHRS13
    OriGene untagged cDNA clones in CMV expression vector (see all 3): DHRS13
    OriGene 3'-UTR clone: DHRS13 
    Browse MicroRNA Expression Plasmids 
    GenScript Custom cDNA clone Services for DHRS13 
    Browse Sino Biological Human cDNA Clones

    Cell
    Lines:
      
    GenScript Custom overexpressing Cell Line Services for DHRS13 

    4 Gene Ontology (GO) molecular function terms (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003824 catalytic activity ----
    GO:0005488 binding IEA--
    GO:0016491 oxidoreductase activity IEA--
    GO:0050662 coenzyme binding ----
    About this table

    DHRS13 for ontologies           About GeneDecksing


    (Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
    About This Section


    DHRS13 for pathways           About GeneDecksing

    1 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathway for  DHRS13
        Inositol Metabolism

        SABiosciences Custom Pathway-Focused PCR Arrays for DHRS13 

        Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for DHRS13
        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DHRS13

    3 Gene Ontology (GO) biological process terms (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008152 metabolic process ----
    GO:0044237 cellular metabolic process ----
    GO:0055114 oxidation-reduction process IEA--
    About this table

    DHRS13 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section
    Browse Small Molecules at Sigma-Aldrich
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for DHRS13


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Millipore,
    siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
    Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
    About This Section

    Inhib.
    RNA:
         
    Browse for Gene Knock-down Tools from Millipore
    Browse Nano Scale siRNA at Sigma-Aldrich
    Sigma-Aldrich siRNA Panels and esiRNA and siRNA for DHRS13
    Sigma-Aldrich shRNA for DHRS13
    OriGene 29mer shRNA kits in GFP-retroviral vector: DHRS13
    OriGene shRNA RFP: DHRS13
    OriGene basic RS shRNA: DHRS13
    OriGene siRNA: DHRS13
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of DHRS13 
    miRNA: Sigma-Aldrich microRNA Mimics for DHRS13
    Browse microRNA target validation systems at Sigma-Aldrich 
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of DHRS13 
    Search SABiosciences for Assays for microRNAs that regulate DHRS13
    Clones: Browse FLAG tag genes at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector: DHRS13
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector: DHRS13
    OriGene untagged cDNA clones in CMV expression vector (see all 3): DHRS13
    OriGene 3'-UTR Clone: DHRS13 
    Browse OriGene MicroRNA Expression Plasmids 
    GenScript Custom cDNA clone Services for DHRS13 
    Primers: OriGene genome-wide validated SYBR primer pairs: DHRS13
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for DHRS13: PPH07307A

    REFSEQ mRNAs for DHRS13 gene: 

    NM_144683.3  

    Additional cDNA sequence: 

    AK296017.1 AY358566.1 BC015582.2 CR591219.1 CR595762.1 CR597091.1 CR598291.1 CR617686.1 

    6 DOTS entries:

    DT.100031389  DT.100688342  DT.427158  DT.100681024  DT.87015758  DT.91750784 

    24/565 AceView cDNA sequences (see all 565):

    CB117585 AI076063 BM725631 BM708733 AY358566 BQ438316 BM917108 AL563747 
    CA455346 NM_144683 CA448508 BM693331 BU163696 BI222336 BM914621 BU688770 
    AI305836 BI818509 CR541784 BX097334 BM917069 BQ878546 AI741599 BQ217852 

    highest scoring ESTs for DHRS13:

    AY358566 BC015582 BE019444 BG490069 BG826818 BM722228 BU501749 CB991212 AL560611 AW014279 

    Unigene Cluster for DHRS13:

    Dehydrogenase/reductase (SDR family) member 13
    Hs.631760  [show with all ESTs]
    Unigene Representative Sequence: BC015582


    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for DHRS13

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5
    SP1:                                    
    SP2:                                    

    About this scheme

    ECgene alternative splicing isoforms for DHRS13
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000394901(uc002hdd.3 uc002hde.3 uc010wba.1) ENST00000426464
    ENST00000378895

    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Primers from OriGene and/or SABiosciences )
    About This Section

    DHRS13 expression in normal and diseased human tissues

    1  / 2  / 3

    4 probe-sets matching DHRS13 gene

    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    52561_s_at2, 3 U95-B 1 1.00 1.00 0.98 0.95 N69449 0.60 0.83 0.73 1
    64430_at2, 3 U95-C 1 1.00 1.00 0.98 1.06 AI076793 0.60 0.83 0.73 1
    226121_at2, 3 U133-B 1 1.00 1.00 -- -- AI076793 0.60 0.83 0.73 1
    226121_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    About this table

    DHRS13 for expression           About GeneDecksing

    Data from Genenote  (Publications) and GNF BioGPS
        About these images
    DHRS13 gene expression
    DHRS13 gene electronic northern expression
    DHRS13 gene sage expression
    About these images

    CGAP SAGE TAG: GGAGTAAGGG

    SOURCE GeneReport for Unigene cluster: Hs.631760
    Primers: OriGene genome-wide validated SYBR primer pairs: DHRS13
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for DHRS13: PPH07307A
        SABiosciences Custom PCR Arrays for DHRS13 


    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section

    Orthologs for DHRS13 gene from 5/7 species (see all 7)
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    DHRS131   -- dehydrogenase/reductase (SDR family) member 13 89.54(n)
    89.28(a)
    491173  XM_548293.2  XP_548293.2 
    chimpanzee
    (Pan troglodytes)
    DHRS131   -- dehydrogenase/reductase (SDR family) member 13 99.66(n)
    100(a)
    736545  XM_001136514.1  XP_001136514.1 
    cow
    (Bos taurus)
    DHRS131   -- dehydrogenase/reductase (SDR family) member 13 87.2(n)
    89.07(a)
    514903  NM_001075687.1  NP_001069155.1 
    mouse
    (Mus musculus)
    Dhrs131 , 5 11 (46.74 cM)5
    dehydrogenase/reductase (SDR family) member 131, 5 84.5(n)1
    85.22(a)1
    704511  NM_183286.21  NP_899109.21 
     AI8493985  AK0119395  (see all 9)
    zebrafish
    (Danio rerio)
    zgc:1017191   -- zgc:101719 55.81(n)
    54.82(a)
    492783  NM_001007424.1  NP_001007425.1 
    About this table        Species with no ortholog for DHRS13

    ENSEMBL Gene Tree for DHRS13 (if available)

    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section
    Paralogs for DHRS13 gene
    DHRS122  WWOX2  DHRSX2  

    DHRS13 for paralogs           About GeneDecksing



    (SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
    About This Section

    10/26 NCBI SNPs in DHRS13 are shown (see all 26)
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidChr 17 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ----------
    rs22776661,2
    C27228118(+) CCTGCC/TGCCAG 2 Q R mis1 ref1 ese34Minor allele frequency- T:0.00NS EA 416
    rs47954741,2
    C,F,A,27228198(+) ACCACG/ACGGCT 2 /R ref1 syn1 ese37Minor allele frequency- A:0.10NS EA NA WA 424
    rs285237161,2
    C,F,27227605(+) GTCTTT/AGTTTT 1 -- int11Minor allele frequency- A:0.04WA 50
    rs342007611,2
    C,F,27228294(+) GCCTCA/GCGGGT 2 R syn1 ref11Minor allele frequency- G:0.05NA 58
    rs343700831,2
    --27227314(+) GTGCT-/GGGGAT 1 -- int10--------
    rs343801861,2
    C,F,27230679(+) CTTTCC/TTTCCT 1 -- ng514Minor allele frequency- T:0.17NA EA WA 164
    rs346513231,2
    --27231755(+) TCTAT-/CCCTAA 1 -- ng510--------
    rs357778511,2
    --27226802(+) TTACT-/GGGCAA 1 -- int10--------
    rs617447981,2
    --27228056(+) GTTGGC/GGAGCT 2 P A mis1 ref10--------
    rs674659681,2
    C,F,27226818(+) ACCTCT/CAGGTT 1 -- int16Minor allele frequency- C:0.17NA WA 82
    About this table

    HapMap Linkage Disequilibrium images for DHRS13 (up to first 250kb)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for DHRS13: --

    QIAGEN SeqTarget long-range PCR primers for resequencing DHRS13 

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (Possibly Related Articles in Doctor's Guide)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
    About This Section

    4 PubMed articles for DHRS13 gene integrated from 7 sources:
    (articles sorted by number of sources associating them with DHRS13)
    1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2, 3 Clark H.F.... Gray A.M. (2003)
    2. The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative. (PubMed id 19027726)1, 3 Persson B.... Oppermann U. (2009)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 147015 HGNC: 28326 AceView: FLOT2andMGC23280 Ensembl:ENSG00000167536 euGenes: HUgn147015
    ECgene: DHRS13 H-InvDB: DHRS13

    (According to HUGE)
    About This Section
      --

    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
      --

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from XenneX, Inc.)
    About This Section
    Patent Information for DHRS13 gene:
    Search GeneIP for patents involving DHRS13

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
    Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or Enzo Life Sciences)
    About This Section

     Millipore Custom Antibody & Bulk Services
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     SeqTarget long-range PCR primers for resequencing DHRS13
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for DHRS13
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     Browse antibodies at Epitomics
     Browse ProSpec Recombinant Proteins

     Browse ELISAs and CLIAs at Uscn
           

    GeneCards Homepage - Last full update: 30 Dec 2010 - Incremental updates: 10 Jan 2011 , 10 Jan 2011

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