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Aliases & Descriptionsfor DHRS13 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions dehydrogenase/reductase (SDR family) member 131 2 OTTHUMP000001635222 SDR7C51 2 short chain dehydrogenase/reductase family 7C, member 52 MGC232801 2 EC 1.1.-.-3 dehydrogenase/reductase SDR family member 132
Export aliases for DHRS13 gene to outside databases Previous GC identifers: GC17M024249 GC17M027224
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Summariesfor DHRS13 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: DHR13_HUMAN, Q6UX07 Function : Putative oxidoreductase (Potential)
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Genomic Viewsfor DHRS13 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: Search SABiosciences Regulatory transcription factor binding sites for DHRS13 Other transcription factors Search SABiosciences Chromatin IP Primers for DHRS13 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for DHRS13
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 17q11.2 Ensembl cytogenetic band: 17q11.2 HGNC cytogenetic band: 17q11.2 DHRS13 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17M023433: view genomic region
(about GC identifiers )
Start:
23,433,016 bp from pter
End:
23,438,305 bp from pter
Size:
5,290 bases
Orientation:
minus strand
1 alternative location : Chr 17- 27,224,799-27,230,089
RefSeq DNA sequence: NC_000017.10 NT_010799.15
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Proteinsfor DHRS13 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: DHR13_HUMAN, Q6UX07 (See
protein sequence )Recommended Name: Dehydrogenase/reductase SDR family member 13 precursor Size : 377 amino acids; 40849 Da
Subcellular location : Secreted (Potential)
Secondary accessions : Q96BH7Alternative splicing : 2 isoforms : Q6UX07-1 Q6UX07-2 Explore the universe of human proteins at neXtProt for DHRS13: NX_Q6UX07 Post-translational modifications:
Phosphorylated upon DNA damage, probably by ATM or ATR (By similarity)1
REFSEQ proteins: NP_653284.2 ENSEMBL proteins: ENSP00000378361 ENSP00000412826 ENSP00000368173 Human Recombinant Proteins 1 Gene Ontology (GO) cellular component term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005576 extracellular region
IEA --
About this table
DHRS13 for ontologies About GeneDecksing Antibodies for DHRS13: Assays for DHRS13:
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Protein
Domains/ Familiesfor DHRS13 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
DHRS13 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q6UX07 ProtoNet protein and cluster: Q6UX07
2 Blocks protein families : IPB002198 Short-chain dehydrogenase/reductase SDR IPB002347 Glucose/ribitol dehydrogenase family signature UniProtKB/Swiss-Prot: DHR13_HUMAN, Q6UX07 Similarity : Belongs to the short-chain dehydrogenases/reductases (SDR) family
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Gene Functionfor DHRS13 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: DHR13_HUMAN, Q6UX07 Function : Putative oxidoreductase (Potential)Enzyme Number (IUBMB): EC 1.1.-.-
4 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
About this table
DHRS13 for ontologies About GeneDecksing
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Pathways & Interactionsfor DHRS13 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
DHRS13 for pathways About GeneDecksing 1 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathway for DHRS13 SABiosciences Custom Pathway-Focused PCR Arrays for DHRS13 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for DHRS13 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DHRS13 3 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0008152 metabolic process
-- -- GO:0044237 cellular metabolic process
-- -- GO:0055114 oxidation-reduction process
IEA --
About this table
DHRS13 for ontologies About GeneDecksing
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Drugs & Compoundsfor DHRS13 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for DHRS13
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Transcriptsfor DHRS13 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for DHRS13 gene: NM_144683.3
Additional cDNA sequence: AK296017.1 AY358566.1 BC015582.2 CR591219.1 CR595762.1 CR597091.1 CR598291.1 CR617686.1
6 DOTS entries : DT.100031389 DT.100688342 DT.427158 DT.100681024 DT.87015758 DT.91750784
24/565 AceView cDNA sequences (see all 565 ):
CB117585 AI076063 BM725631 BM708733 AY358566 BQ438316 BM917108 AL563747 CA455346 NM_144683 CA448508 BM693331 BU163696 BI222336 BM914621 BU688770 AI305836 BI818509 CR541784 BX097334 BM917069 BQ878546 AI741599 BQ217852
highest scoring ESTs for DHRS13 :AY358566 BC015582 BE019444 BG490069 BG826818 BM722228 BU501749 CB991212 AL560611 AW014279 Unigene Cluster for DHRS13:
Dehydrogenase/reductase (SDR family) member 13 Hs.631760 [show with all ESTs ] Unigene Representative Sequence: BC015582 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for DHRS13 ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 SP1 :             SP2 :            
About this scheme ECgene alternative splicing isoforms for DHRS13 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000394901 (uc002hdd.3 uc002hde.3 uc010wba.1 ) ENST00000426464 ENST00000378895
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Expression for DHRS13 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section DHRS13 expression in normal and diseased human tissues 1 / 2 / 3
4 probe-sets matching DHRS13 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
52561_s_at2 , 3
U95-B
1
1.00
1.00
0.98
0.95
N69449
0.60
0.83
0.73
1
64430_at2 , 3
U95-C
1
1.00
1.00
0.98
1.06
AI076793
0.60
0.83
0.73
1
226121_at2 , 3
U133-B
1
1.00
1.00
--
--
AI076793
0.60
0.83
0.73
1
226121_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
About this table
DHRS13 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GGAGTAAGGG SOURCE GeneReport for Unigene cluster: Hs.631760 SABiosciences Custom PCR Arrays for DHRS13
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Orthologsfor DHRS13 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for DHRS13 gene from 5/7 species (see all 7 )
About this table Species with no ortholog for DHRS13 ENSEMBL Gene Tree for DHRS13 (if available)
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Paralogsfor DHRS13 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for DHRS13 gene DHRS12 2 WWOX 2 DHRSX 2
DHRS13 for paralogs About GeneDecksing
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Genomic Variantsfor DHRS13 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 17 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for DHRS13 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for DHRS13: --
QIAGEN SeqTarget long-range PCR primers for resequencing DHRS13
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Disorders & Mutationsfor DHRS13 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section --
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Medical Newsfor DHRS13 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor DHRS13 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 4 PubMed articles for DHRS13 gene integrated from 7 sources : (articles sorted by number of sources associating them with DHRS13) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 , 3 Clark H.F.... Gray A.M. (2003) The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative. (PubMed id 19027726) 1 , 3 Persson B.... Oppermann U. (2009) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for DHRS13 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing DHRS13 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing DHRS13 gene
(According to HUGE )
About This Section --
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Specialized Databases showing DHRS13 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for DHRS13 gene: Search GeneIP for patents involving DHRS13 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor DHRS13 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for DHRS13
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