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Aliases & Descriptionsfor DNAJC12 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions DnaJ (Hsp40) homolog, subfamily C, member 121 2 JDP11 2 3 5 J domain-containing protein 12 3 dnaJ homolog subfamily C member 122 J domain containing protein 1 (JDP1)2 J domain protein 12
Export aliases for DNAJC12 gene to outside databases Previous GC identifers: GC10M068902 GC10M069226 GC10M069556
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Summariesfor DNAJC12 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for DNAJC12 : This gene encodes a member of a subclass of the HSP40/DnaJ protein family. Members of this family of proteins are associated with complex assembly, protein folding, and export. Two transcript variants encoding distinct isoforms have been identified for this gene. (provided by RefSeq)
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Genomic Viewsfor DNAJC12 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the DNAJC12 gene promoter: NRSF form 1 NRSF form 2 POU2F1 NF-YA CP1C CP1A NF-Y LCR-F1 HNF-4alpha2 COUP-TF1 Other transcription factors Search SABiosciences Chromatin IP Primers for DNAJC12 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 10q22.1 Ensembl cytogenetic band: 10q21.3 HGNC cytogenetic band: 10q21.3 DNAJC12 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10M063555: view genomic region
(about GC identifiers )
Start:
63,555,841 bp from pter
End:
63,597,255 bp from pter
Size:
41,415 bases
Orientation:
minus strand
1 alternative location : Chr 10- 69,556,427-69,597,924
RefSeq DNA sequence: NC_000010.10 NT_030059.13
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Proteinsfor DNAJC12 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: DJC12_HUMAN, Q9UKB3 (See
protein sequence )Recommended Name: DnaJ homolog subfamily C member 12 Size : 198 amino acids; 23415 Da
PDB structures from and Proteopedia : 2CTQ (3D)
 
Secondary accessions : Q5JVQ1 Q9UKB2Alternative splicing : 2 isoforms : Q9UKB3-1 Q9UKB3-2 Explore the universe of human proteins at neXtProt for DNAJC12: NX_Q9UKB3 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_068572.1 NP_957714.1 ENSEMBL proteins: ENSP00000225171 ENSP00000343575 Human Recombinant Proteins Antibodies for DNAJC12: Assays for DNAJC12:
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Protein
Domains/ Familiesfor DNAJC12 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
DNAJC12 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9UKB3 ProtoNet protein and cluster: Q9UKB3
UniProtKB/Swiss-Prot: DJC12_HUMAN, Q9UKB3 Similarity : Contains 1 J domain
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Gene Functionfor DNAJC12 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section 2 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0031072 heat shock protein binding
IEA -- GO:0051082 unfolded protein binding
IEA --
About this table
DNAJC12 for ontologies About GeneDecksing
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Pathways & Interactionsfor DNAJC12 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Pathway-Focused PCR Array including DNAJC12 : PAHS-076A Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DNAJC12 1 Gene Ontology (GO) biological process term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006457 protein folding
IEA --
About this table
DNAJC12 for ontologies About GeneDecksing
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Drugs & Compoundsfor DNAJC12 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for DNAJC12
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Transcriptsfor DNAJC12 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for DNAJC12 gene (2 alternative transcripts): NM_021800.2 NM_201262.1
Additional cDNA sequence: AF176012.1 AF176013.1 AK289537.1 BC017018.1 CR457184.1 CR594852.1
5 DOTS entries : DT.91765210 DT.95129154 DT.416346 DT.91976343 DT.121246995
24/142 AceView cDNA sequences (see all 142 ):
F03969 NM_021800 AA947853 Z45047 CR594852 AW511355 BE219867 F07732 T35837 AI392695 AF176013 BI861213 BI253314 BX091336 BF794642 AA704976 AA699661 BC017018 BI438228 AA890216 AA719166 CB117729 AW614546 BG497386
highest scoring ESTs for DNAJC12 :AI825855 AI761752 AA523419 AA699661 AF176012 AF176013 AW451858 BE048700 BE219867 BE789578 Unigene Cluster for DNAJC12:
DnaJ (Hsp40) homolog, subfamily C, member 12 Hs.260720 [show with all ESTs ] Unigene Representative Sequence: NM_021800 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for DNAJC12 (see all 6 ) ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d ^ 8a · 8b ^ 9a · 9b SP1 :         -   -   -           -   -           SP2 :         -   -   -     -       -   -           SP3 :         -   -   -           -   -           SP4 :         -   -       -                   SP5 :             -     -                  
About this scheme ECgene alternative splicing isoforms for DNAJC12 5 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000480180 ENST00000225171 (uc001jnb.2 ) ENST00000480963 ENST00000483798 ENST00000339758 (uc001jnc.2 )
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Expression for DNAJC12 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section DNAJC12 expression in normal and diseased human tissues 1 / 2 / 3
9 probe-sets matching DNAJC12 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
54731_at2 , 3
U95-B
1
1.00
1.00
0.98
1.34
AI761752
0.80
1.00
0.91
1
54727_g_at2 , 3
U95-B
1
1.00
1.00
0.98
1.00
AI825855
1.00
0.90
0.95
1
54723_at2 , 3
U95-B
1
0.69
1.00
0.86
0.69
AI825855
1.00
0.90
0.95
1
223721_s_at2 , 3
U133-B
1
1.00
1.00
--
--
AF176013
0.80
0.88
0.84
1
218976_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_021800
0.60
1.00
0.82
1
223722_at2 , 3
U133-B
1
0.73
1.00
--
--
AF176013
0.80
0.88
0.84
1
223721_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
218976_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
223722_at2
U133Plus2
1
0.73
1.00
--
--
--
--
--
--
--
About this table
DNAJC12 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.260720 UniProtKB/Swiss-Prot: DJC12_HUMAN, Q9UKB3 Tissue specificity : Expressed at high levels in brain, heart, and testis, and at reduced levels in kidney and stomach
SABiosciences Expression via Pathway-Focused PCR Array including DNAJC12 : PAHS-076A
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Orthologsfor DNAJC12 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for DNAJC12 gene from 5/10 species (see all 10 )
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
DNAJC121
--
DnaJ (Hsp40) homolog, subfamily C, member 12
91.07(n) 86.27(a)
479224 XM_536366.2 XP_536366.2
chimpanzee (Pan troglodytes)
DNAJC121
--
DnaJ (Hsp40) homolog, subfamily C, member 12
99.16(n) 97.47(a)
466287 XM_521687.2 XP_521687.2
cow (Bos taurus)
DNAJC121
--
DnaJ (Hsp40) homolog, subfamily C, member 12
89.23(n) 85.35(a)
281259 NM_174096.2 NP_776521.1
rat (Rattus norvegicus)
Dnajc121
--
DnaJ (Hsp40) homolog, subfamily C, member 12
80.13(n) 76.26(a)
619393 NM_001034032.1 NP_001029204.1
mouse (Mus musculus)
Dnajc121 , 5
10 (32.57 cM) 5
DnaJ (Hsp40) homolog, subfamily C, member 121, 5
80.13(n) 1 77.27(a) 1
30045 1 NM_013888.2 1 NP_038916.1 1 AF132906 5 AI852445 5 (see all 12 )
About this table Species with no ortholog for DNAJC12 ENSEMBL Gene Tree for DNAJC12 (if available)
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Paralogsfor DNAJC12 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for DNAJC12 gene DNAJC17 2
DNAJC12 for paralogs About GeneDecksing
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Genomic Variantsfor DNAJC12 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 10 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for DNAJC12 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for DNAJC12: --
QIAGEN SeqTarget long-range PCR primers for resequencing DNAJC12
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Disorders & Mutationsfor DNAJC12 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
DNAJC12 for disorders About GeneDecksing
OMIM: 606060 Human Genome Epidemiology (HuGE) Navigator: DNAJC12 (2 documents) Export disorders and mutations for DNAJC12 gene to outside databases
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Medical Newsfor DNAJC12 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor DNAJC12 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 8 PubMed articles for DNAJC12 gene integrated from 7 sources : (articles sorted by number of sources associating them with DNAJC12) Characterization of JDP genes, an evolutionarily conserved J domain- only protein family, from human and moths. (PubMed id 10760603) 1 , 2 , 3 Lee J.... Chung J.H. (2000) The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054) 1 , 2 Deloukas P.... Rogers J. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) JDP1 (DNAJC12/Hsp40) expression in breast cancer and its association with estrogen receptor status. (PubMed id 16391838) 1 , 7 De Bessa S.A....Nagai M.A. (2006) Association studies of 23 positional/functional candidate genes on chromosome 10 in late-onset Alzheimer's disease. (PubMed id 17373700) 1 Morgan A.R....Williams J. (2007) Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PubMed id 16712791) 1 Wang A.G....Kim N.S. (2006) A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PubMed id 16385451) 1 Grupe A....Goate A. (2006) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for DNAJC12 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing DNAJC12 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing DNAJC12 gene
(According to HUGE )
About This Section --
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Specialized Databases showing DNAJC12 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for DNAJC12 gene: Search GeneIP for patents involving DNAJC12 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor DNAJC12 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for DNAJC12
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