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DPPA2 Gene

protein-coding GIFtS: 45

GC03M106386

developmental pluripotency associated 2
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

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(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases & Descriptions
developmental pluripotency associated 2¹ ²		OTTHUMP00000214409²
PESCRG1¹ ² ³		cancer/testis antigen 100²
CT100¹ ²		developmental pluripotency-associated protein 2²
Pluripotent embryonic stem cell-related gene 1 protein² ³

External Ids:	HGNC: 19197¹	Entrez Gene: 151871²	Ensembl: ENSG00000163530⁷	UniProtKB: Q7Z7J5³

Export aliases for DPPA2 gene to outside databases

Previous GC identifers: GC00U909443 GC03M110496 GC03M109012

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: DPPA2_HUMAN, Q7Z7J5

Function: May play a role in maintaining cell pluripotentiality

Gene Wiki entry for DPPA2 (Developmental pluripotency associated 2)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the DPPA2 gene promoter:
         NF-1   Egr-1   COUP-TF1   HNF-4alpha2   Elk-1   POU2F1   AML1a
         Other transcription factors

Search SABiosciences Chromatin IP Primers for DPPA2

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q13.13 Ensembl cytogenetic band: 3q13.13 HGNC cytogenetic band: 3q13.13

DPPA2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DPPA2 gene location

GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure

GeneLoc location for GC03M106386: view genomic region (about GC identifiers)

Start:	106,386,650 bp from pter
End:	106,409,705 bp from pter
Size:	23,056 bases
Orientation:	minus strand

1 alternative location:

Chr3- 109,012,635-109,035,364

RefSeq DNA sequence:

NC_000003.11 NT_005612.16

(According to ¹UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
About This Section

UniProtKB/Swiss-Prot: DPPA2_HUMAN, Q7Z7J5 (See protein sequence)

Recommended Name: Developmental pluripotency-associated protein 2

Size: 298 amino acids; 33784 Da

Subcellular location: Nucleus

Secondary accessions: Q8WVF0

Explore the universe of human proteins at neXtProt for DPPA2: NX_Q7Z7J5

REFSEQ proteins: NP_620170.3

ENSEMBL proteins:

ENSP00000417710 ENSP00000295771 ENSP00000401216

Human Recombinant Proteins

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1 Gene Ontology (GO) cellular component term (GO ID links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	IEA	--

About this table

DPPA2 for ontologies About GeneDecksing

Antibodies for DPPA2:

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Assays for DPPA2:

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	Browse Enzo Life Sciences for kits & assays
	Uscn ELISAs and CLIAs for DPPA2

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

DPPA2 for domains About GeneDecksing

1 InterPro domain/family:

IPR003034 SAP_DNA-bd

Graphical View of Domain Structure for InterPro Entry Q7Z7J5

ProtoNet protein and cluster: Q7Z7J5

1 Blocks protein family: IPB003034 DNA-binding SAP

UniProtKB/Swiss-Prot: DPPA2_HUMAN, Q7Z7J5

Similarity: Contains 1 SAP domain

(According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
About This Section

UniProtKB/Swiss-Prot: DPPA2_HUMAN, Q7Z7J5

Function: May play a role in maintaining cell pluripotentiality

Inhib. RNA:		Browse for Gene Knock-down Tools from Millipore
		Browse Nano Scale siRNA at Sigma-Aldrich Sigma-Aldrich esiRNA and siRNA for DPPA2 Sigma-Aldrich shRNA for DPPA2
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miRNA:		Sigma-Aldrich microRNA Mimics for DPPA2 Browse microRNA target validation systems at Sigma-Aldrich
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of DPPA2
		Search SABiosciences for Assays for microRNAs that regulate DPPA2

Gene
Editing:

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		OriGene GFP tagged cDNA clones in CMV expression vector: DPPA2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector: DPPA2 OriGene untagged cDNA clones in CMV expression vector: DPPA2 Browse 3'-UTR reporter clones for miRNA target validation Browse MicroRNA Expression Plasmids
		GenScript Custom cDNA clone Services for DPPA2
		Browse Sino Biological Human cDNA Clones

Cell
Lines:

GenScript Custom overexpressing Cell Line Services for DPPA2

1 Gene Ontology (GO) molecular function term (GO ID links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003676	nucleic acid binding	IEA	--

About this table

DPPA2 for ontologies About GeneDecksing

(Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
About This Section

SABiosciences Custom Pathway-Focused PCR Arrays for DPPA2

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for DPPA2

5/17 Interacting proteins for DPPA2 (Q7Z7J5²) via UniProtKB, MINT, and/or STRING (see all 17)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
AP2M1	Q96CW1²	MINT-67494
DPPA2	Q7Z7J5²	MINT-67173
DPPA4	Q7L190²	MINT-67879
DVL2	O14641²	MINT-66381
FXR2	P51116²	MINT-68237

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse Small Molecules at Sigma-Aldrich

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for DPPA2

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Millipore,
siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
About This Section

Inhib. RNA:		Browse for Gene Knock-down Tools from Millipore
		Browse Nano Scale siRNA at Sigma-Aldrich Sigma-Aldrich esiRNA and siRNA for DPPA2 Sigma-Aldrich shRNA for DPPA2
		OriGene 29mer shRNA kits in GFP-retroviral vector: DPPA2 OriGene shRNA RFP: DPPA2 OriGene basic RS shRNA: DPPA2 OriGene siRNA: DPPA2
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of DPPA2

miRNA:		Sigma-Aldrich microRNA Mimics for DPPA2 Browse microRNA target validation systems at Sigma-Aldrich
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of DPPA2
		Search SABiosciences for Assays for microRNAs that regulate DPPA2

Clones:		Browse FLAG tag genes at Sigma-Aldrich
		OriGene GFP tagged cDNA clones in CMV expression vector: DPPA2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector: DPPA2 OriGene untagged cDNA clones in CMV expression vector: DPPA2 Browse 3'-UTR reporter clones for miRNA target validation Browse OriGene MicroRNA Expression Plasmids
		GenScript Custom cDNA clone Services for DPPA2

Primers:		OriGene genome-wide validated SYBR primer pairs: DPPA2 Browse OriGene validated miRNA SYBR primer pairs
		SABiosciences RT² qPCR Primer Assay for DPPA2: PPH17518A

REFSEQ mRNAs for DPPA2 gene:

NM_138815.3

Additional cDNA sequence:

AY283672.1 BC018070.1

1 DOTS entry:

DT.91675981

24/87 AceView cDNA sequences (see all 87):

BX956210 NM_018189 AA495991 AW291865 AU135671 BX115701 AU130753 BX281871

AI650955 AA219276 AI342042 AI992076 BX956395 BF223616 AA682843 AU123850

AI656779 BC018070 AA226938 AU125618 BG150289 BG702493 AK001575 AA218809

highest scoring ESTs for DPPA2:

BC018070 BG702493 CD048772 CF948547 AI204212 AY283672 BG190705 BG197811 BG198867 BX115701

Unigene Cluster for DPPA2:

Developmental pluripotency associated 2

Hs.351113 [show with all ESTs]

Unigene Representative Sequence: AY283672

GeneLoc Exon Structure

3 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000478945(uc003dxo.2) ENST00000295771 ENST00000451064

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Primers from OriGene and/or SABiosciences )
About This Section

DPPA2 expression in normal and diseased human tissues

¹ / ² / ³

3 probe-sets matching DPPA2 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
56618_at²^{, 3}	U95-B	3	0.75	0.85	1.00	1.00	AI204212	0.60	1.00	0.82	1
240301_at²^{, 3}	U133-B	2	0.55	0.86	--	--	AI204212	0.60	1.00	0.82	1
240301_at²	U133Plus2	2	0.55	0.86	--	--	--	--	--	--	--

About this table

DPPA2 for expression About GeneDecksing

Data from Genenote (Publications) and GNF BioGPS
About these images

DPPA2 gene electronic northern expression

About these images

CGAP SAGE TAG: ATCTACAAAA

SOURCE GeneReport for Unigene cluster: Hs.351113

UniProtKB/Swiss-Prot: DPPA2_HUMAN, Q7Z7J5

Tissue specificity: Expressed in embryonic stem cells. No expression is seen in 5 months embryo, mesenchymal stem

cells, embryonic fibrocytes and adult tissues

Primers:		OriGene genome-wide validated SYBR primer pairs: DPPA2 Browse OriGene validated miRNA SYBR primer pairs
		SABiosciences RT² qPCR Primer Assay for DPPA2: PPH17518A

SABiosciences Custom PCR Arrays for DPPA2

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for DPPA2 gene from 5 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	DPPA2¹	--	developmental pluripotency associated 2	75.71(n) 63.94(a)	607166 XM_843766.1 XP_848859.1
chimpanzee (Pan troglodytes)	DPPA2¹	--	developmental pluripotency associated 2	99.22(n) 99.33(a)	742468 XM_001145672.1 XP_001145672.1
cow (Bos taurus)	DPPA2¹	--	developmental pluripotency associated 2	74.09(n) 59.36(a)	781928 XM_001250478.1 XP_001250479.1
rat (Rattus norvegicus)	LOC685364¹	--	similar to developmental pluripotency-associated 2	66.67(n) 53.2(a)	685364 XM_001063497.1 XP_001063497.1
mouse (Mus musculus)	Dppa2⁵ ENSMUSG00000044065¹	16 (30.75 cM)⁵	developmental pluripotency associated 2⁵ predicted gene, ENSMUSG00000044065¹	61.35(n)¹ 47.87(a)¹	100043167¹ XM_001479887.1¹ XP_001479937.1¹ AA794108⁵ AF490346⁵ (see all 13)

About this table Species with no ortholog for DPPA2

ENSEMBL Gene Tree for DPPA2 (if available)

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for DPPA2 gene

DPPA4²

DPPA2 for paralogs About GeneDecksing

(SNPs according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section

SNP ID	Valid	Chr 3 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
Genomic Data				Transcription Related Data				Allele Frequencies
			--	--	--		--	--
rs1163444^1,2	C,F,	109034710(-)	`ttcatA/Ggagat`	1	--	int¹		4		NA EA WA	212
rs1163445^1,2	C,F,	109034375(-)	`GCTTCA/GTATTT`	1	--	int¹		12		MN NS EA NA WA	1084
rs1163446^1,2	C,F,H,	109032900(-)	`CTTTCG/AGAGTA`	1	--	int¹		19		EA NA NS WA	982
rs1920026^1,2	--	109017108(-)	`TATTAA/GGTTTT`	1	--	int¹		0	--	--	--	--
rs1920027^1,2	--	109016881(-)	`TCCTAA/GGCTCA`	1	--	int¹		0	--	--	--	--
rs2625620^1,2	C,F,O,	109036042(-)	`TCCACA/GACTGG`	1	--	ng5¹		10		NS EA NA WA	562
rs2625621^1,2	C,F,	109035964(-)	`CCATAT/GATTTT`	1	--	ng5¹		3		NS WA NA	114
rs2625622^1,2	C,H,	109035691(-)	`CTCCGC/TCTCCC`	1	--	ng5¹		0	--	--	--	--
rs2699955^1,2	--	109026378(-)	`CTGCCC/TCCCAG`	1	--	int¹		1		NA	2
rs2699956^1,2	C,F,	109025539(-)	`TACCGC/TGCCTG`	1	--	int¹		3		NA	76

About this table

HapMap Linkage Disequilibrium images for DPPA2 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for DPPA2: --

QIAGEN SeqTarget long-range PCR primers for resequencing DPPA2

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
About This Section

DPPA2 for disorders About GeneDecksing

Human Genome Epidemiology (HuGE) Navigator: DPPA2 (1 document)

Export disorders and mutations for DPPA2 gene to outside databases

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶UniProtKB/TrEMBL, and/or ⁷Novoseek)
About This Section

8 PubMed articles for DPPA2 gene integrated from 7 sources:
(articles sorted by number of sources associating them with DPPA2)

Molecular cloning and characterization analysis of HPESCRG1, a novel gene expressed specifically in human embryonic stem cell. (PubMed id 15583978)^{1, 2, 3} Du J.... Lu G.X. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)¹ Rose J.E....Uhl G.R. (2010)
Expression and serum immunoreactivity of developmenta lly restricted differentiation antigens in epithelial ovarian cancer. (PubMed id 19705800)¹ Tchabo N.E....Odunsi K. (2009)
Differential expression of the embryo/cancer gene ECSA(DPPA2), the cancer/testis gene BORIS and the pluripotency structural gene OCT4, in human preimplantation development. (PubMed id 18467432)¹ Monk M....Hawes S. (2008)
ECSA/DPPA2 is an embryo-cancer antigen that is coexpressed with cancer-testis antigens in non-small cell lung cancer. (PubMed id 18519755)¹ John T....Cebon J.S. (2008)
Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)¹ Rual J.F....Vidal M. (2005)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 151871	HGNC: 19197	AceView: DPPA4	Ensembl:ENSG00000163530	euGenes: HUgn151871
ECgene: DPPA2	H-InvDB: DPPA2

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Intellectual Property for DPPA2 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from XenneX, Inc.)

About This Section

Patent Information for DPPA2 gene:
Search GeneIP for patents involving DPPA2

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or Enzo Life Sciences)
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	QIAGEN Custom miScript Target Protector blocks miRNA-binding site of DPPA2
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	QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of DPPA2

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DPPA2 Gene

protein-coding GIFtS: 45

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DPPA2 Gene

protein-coding GIFtS: 45

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Aliases &
Descriptions
for DPPA2 gene

Summaries
for DPPA2 gene

Genomic Views
for DPPA2 gene

Proteins
for DPPA2 gene

Protein Domains/
Families
for DPPA2 gene

Gene Function
for DPPA2 gene

Pathways & Interactions
for DPPA2 gene

Drugs & Compounds
for DPPA2 gene

Transcripts
for DPPA2 gene

Expression
for DPPA2 gene

Orthologs
for DPPA2 gene

Paralogs
for DPPA2 gene

Genomic Variants
for DPPA2 gene

Disorders & Mutations
for DPPA2 gene

Medical News
for DPPA2 gene

Publications
for DPPA2 gene

Intellectual Property
for DPPA2 gene

Products
for DPPA2 gene