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Aliases & Descriptionsfor FANCG gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions Fanconi anemia, complementation group G1 2 X-ray repair, complementing defective, in Chinese hamster, 92 XRCC92 3 5 X-ray repair complementing defective repair in Chinese hamster cells 92 FAG1 2 Fanconi anemia group G protein2 DNA repair protein XRCC92 3 Protein FACG3
Export aliases for FANCG gene to outside databases Previous GC identifers: GC09M035386 GC09M035243 GC09M035063
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Summariesfor FANCG gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for FANCG : The Fanconi anemia complementation group (FANC) currently includes FANCA, FANCB, FANCC, FANCD1 (also called BRCA2), FANCD2, FANCE, FANCF, FANCG, FANCI, FANCJ (also called BRIP1), FANCL, FANCM and FANCN (also called PALB2). The previously defined group FANCH is the same as FANCA. Fanconi anemia is a genetically heterogeneous recessive disorder characterized by cytogenetic instability, hypersensitivity to DNA crosslinking agents, increased chromosomal breakage, and defective DNA repair. The members of the Fanconi anemia complementation group do not share sequence similarity; they are related by their assembly into a common nuclear protein complex. This gene encodes the protein for complementation group G. (provided by RefSeq) UniProtKB/Swiss-Prot: FANCG_HUMAN, O15287 Function : DNA repair protein that may operate in a postreplication repair or a cell cycle checkpoint function. May beimplicated in interstrand DNA cross-link repair and in the maintenance of normal chromosome stability. Candidate tumor suppressor gene Gene Wiki entry for FANCG
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Genomic Viewsfor FANCG gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the FANCG gene promoter: GATA-1 CREB deltaCREB GATA-3 GATA-2 NF-kappaB1 NF-kappaB ATF6 PPAR-gamma2 PPAR-gamma1 Other transcription factors Search SABiosciences Chromatin IP Primers for FANCG Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for FANCG
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 9p13 Ensembl cytogenetic band: 9p13.3 HGNC cytogenetic band: 9p13 FANCG Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure
GeneLoc location for GC09M035030: view genomic region
(about GC identifiers )
Start:
35,029,423 bp from pter
End:
35,035,601 bp from pter
Size:
6,179 bases
Orientation:
minus strand
1 alternative location : Chr 9- 35,073,832-35,080,013
RefSeq DNA sequence: NC_000009.11 NT_008413.18
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Proteinsfor FANCG gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: FANCG_HUMAN, O15287 (See
protein sequence )Recommended Name: Fanconi anemia group G protein Size : 622 amino acids; 68554 Da
Subunit : Belongs to the multisubunit FA complex composed of FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9 andFANCM. The complex is not found in FA patients
Subcellular location : Nucleus. Cytoplasm. Note=The major form is nuclear. The minor form is cytoplasmicExplore the universe of human proteins at neXtProt for FANCG: NX_O15287 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_004620.1 ENSEMBL proteins: ENSP00000412793 ENSP00000409607 ENSP00000367910 Human Recombinant Proteins 4 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
FANCG for ontologies About GeneDecksing Antibodies for FANCG: Assays for FANCG:
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Protein
Domains/ Familiesfor FANCG gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
FANCG for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry O15287 ProtoNet protein and cluster: O15287
UniProtKB/Swiss-Prot: FANCG_HUMAN, O15287 Similarity : Contains 4 TPR repeats
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Gene Functionfor FANCG gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: FANCG_HUMAN, O15287 Function : DNA repair protein that may operate in a postreplication repair or a cell cycle checkpoint function. May beimplicated in interstrand DNA cross-link repair and in the maintenance of normal chromosome stability. Candidate tumor suppressor gene
3 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
About this table
FANCG for ontologies About GeneDecksing Animal Models: 4 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Fancg) :
FANCG for phenotypes About GeneDecksing
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Pathways & Interactionsfor FANCG gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
FANCG for pathways About GeneDecksing 1 Millipore Pathway for FANCG 2 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathways for FANCG SABiosciences Pathway-Focused PCR Array including FANCG : PAHS-029A Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for FANCG SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for FANCG 5/23 Interacting proteins for FANCG (ENSP00000367910 3 O15287 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 23 )About this table 5/8 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 8 ):
About this table
FANCG for ontologies About GeneDecksing
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Drugs & Compoundsfor FANCG gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
FANCG for compounds About GeneDecksing Browse Tocris compounds for FANCG 6 Novoseek chemical compound relationships for FANCG gene
About this table
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Transcriptsfor FANCG gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for FANCG gene: NM_004629.1
Additional cDNA sequence: AJ007669.1 AK293427.1 AK311348.1 AK312987.1 BC000032.2 BC011623.2 BT009813.1 CR592637.1 U70310.1
16 DOTS entries : DT.115886 DT.100781895 DT.100781893 DT.100781892 DT.95280820 DT.121145912 DT.91969485 DT.95280823
DT.121145915 DT.121145920 DT.95280822 DT.100781883 DT.102838808 DT.95280830 DT.121145935 DT.95280831 24/197 AceView cDNA sequences (see all 197 ):
CA390704 AA233751 AA426567 U70310 BQ881362 AA340034 BQ898789 BP364172 CF529400 AL701956 BM716105 NM_004629 BM551902 T33509 BI760648 BM045080 AA598979 BC011623 AA814381 BC000032 BU192683 AW955161 BM051787 T35916
highest scoring ESTs for FANCG :AJ007669 AA180512 AL559559 AL701956 AL711298 AU125366 AU130696 BC000032 BC011623 BE255777 Unigene Cluster for FANCG:
Fanconi anemia, complementation group G Hs.591084 [show with all ESTs ] Unigene Representative Sequence: AJ007669 GeneLoc Exon Structure 8 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000474894 ENST00000425676 (uc003zwa.1 ) ENST00000448890 ENST00000378643 (uc003zwb.1 uc010mkj.1 uc011lot.1 )ENST00000461149 ENST00000476212 ENST00000462124 ENST00000481254
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Expression for FANCG gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section FANCG expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching FANCG gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
37584_at2 , 3
U95-A
1
1.00
1.00
1.00
1.00
AJ007669
1.00
1.00
1.00
1
203564_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_004629
0.60
1.00
0.82
1
203564_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
About this table
FANCG for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AAGATGCTCT SOURCE GeneReport for Unigene cluster: Hs.591084 Expression variation in blood from EXPOLDB for FANCG
UniProtKB/Swiss-Prot: FANCG_HUMAN, O15287 Tissue specificity : Highly expressed in testis and thymus. Found in lymphoblasts
SABiosciences Expression via Pathway-Focused PCR Array including FANCG : PAHS-029A
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Orthologsfor FANCG gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for FANCG gene from 5/7 species (see all 7 )
About this table Species with no ortholog for FANCG ENSEMBL Gene Tree for FANCG (if available)
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Paralogsfor FANCG gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section --
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Genomic Variantsfor FANCG gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 9 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for FANCG (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for FANCG: --
QIAGEN SeqTarget long-range PCR primers for resequencing FANCG
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Disorders & Mutationsfor FANCG gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
FANCG for disorders About GeneDecksing
OMIM: 602956 UniProtKB/Swiss-Prot: FANCG_HUMAN, O15287
Defects in FANCG are a cause of Fanconi anemia (FA) [MIM:227650]. FA is a genetically heterogeneous, autosomal recessive disorder characterized by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair
10/12 Novoseek disease relationships for FANCG gene (see all 12 )
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
fanconis anemia
96.8
19
12552564 (2), 11050007 (1), 15299017 (1), 19102630 (1) (see all 17 )
cancer
47.5
2
12351379 (1), 19861535 (1)
anemia
43.5
5
16643430 (1), 12915460 (1), 11093276 (1), 12001267 (1)
t-all
36.1
2
10994546 (1)
pancreatic cancer
33.2
11
14726700 (5), 15277238 (1), 15107617 (1), 12750283 (1) (see all 5 )
hnscc
32.8
2
17409780 (1), 16466850 (1)
chromosomal aberrations
20.7
2
9256465 (1), 17097336 (1)
somatic mutations
19.1
2
14726700 (1), 12750283 (1)
carcinoma squamous cell
15.2
1
16982972 (1)
breast cancer
13.9
2
14695169 (1)
About this table Genatlas disease: FANCG Fanconi anemia,autosomal recessive,complementation group G,characterized by progressive bone marrow failure (pancytopenia),often associated with skeletal abnormalities and an increased cancer risk and with spontaneous chromosomal breakage exacerbated by exposure to DNA cross-linking agents GeneTests: FANCG Fanconi Anemia Locus Specific Mutation Databases (LSDB): FANCG Human Gene Mutation Database (HGMD) : FANCG Genetic Association Database (GAD): FANCG Human Genome Epidemiology (HuGE) Navigator: FANCG (14 documents) Export disorders and mutations for FANCG gene to outside databases
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Medical Newsfor FANCG gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor FANCG gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/127 PubMed articles for FANCG gene, integrated from 7 sources (see all 127 ): (articles sorted by number of sources associating them with FANCG) The human XRCC9 gene corrects chromosomal instability and mutagen sensitivities in CHO UV40 cells. (PubMed id 9256465) 1 , 2 , 3, 7 Liu N.... Thompson L.H. (1997) Spectrum of mutations in the Fanconi anaemia group G gene, FANCG/XRCC9. (PubMed id 11093276) 1 , 2 , 7 Demuth I.... Digweed M. (2000) Fanconi anemia proteins FANCA, FANCC, and FANCG/XRCC9 interact in a functional nuclear complex. (PubMed id 10373536) 1 , 2 , 7 Garcia-Higuera I.... D'Andrea A.D. (1999) Polymorphisms of DNA repair genes and risk of non-small cell lung cancer. (PubMed id 16195237) 1 , 4 Zienolddiny S....Haugen A. (2006) A human ortholog of archaeal DNA repair protein Hef is defective in Fanconi anemia complementation group M. (PubMed id 16116422) 1 , 2 Meetei A.R....Wang W. (2005) X-linked inheritance of Fanconi anemia complementation group B. (PubMed id 15502827) 1 , 2 Meetei A.R....Joenje H. (2004) DNA sequence and analysis of human chromosome 9. (PubMed id 15164053) 1 , 2 Humphray S.J.... Dunham I. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) A multiprotein nuclear complex connects Fanconi anemia and Bloom syndrome. (PubMed id 12724401) 1 , 2 Meetei A.R.... Wang W. (2003) The Fanconi anaemia group G gene FANCG is identical with XRCC9. (PubMed id 9806548) 1 , 2 De Winter J.P.... Joenje H. (1998)
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External Searches for FANCG gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing FANCG gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing FANCG gene
(According to HUGE )
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Specialized Databases showing FANCG gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
ATLAS Chromosomes in Cancer entry for FANCG Genetics and Cytogenetics in Oncology and Haematology Fanconi Anemia Mutation Database http://www.rockefeller.edu/fanconi/mutate/jumpg.html GeneReviews http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/FANCG NIEHS-SNPs http://egp.gs.washington.edu/data/fancg/
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About This Section Patent Information for FANCG gene: Search GeneIP for patents involving FANCG GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor FANCG gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
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