FCER2 Gene
protein-coding GIFtS : 63
GC19M007423
Fc fragment of IgE, low affinity II, receptor for (CD23) (Previous names: Fc fragment of IgE, low affinity II, receptor for (CD23A) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: CD23A, FCE2 )
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Aliases & Descriptionsfor FCER2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions Fc fragment of IgE, low affinity II, receptor for (CD23)1 2 CD23A2 3 CLEC4J1 2 3 5 BLAST-22 3 CD231 2 5 IGEBF2 3 FCE22 3 5 Fc fragment of IgE, low affinity II, receptor for (CD23A)1 Immunoglobulin E-binding factor2 3 fc-epsilon-RII2 Lymphocyte IgE receptor2 3 low affinity immunoglobulin epsilon Fc receptor2 C-type lectin domain family 4 member J2 3 C-type lectin domain family 4, member J2 CD23 antigen2 3 Fc-epsilon-RII3
Export aliases for FCER2 gene to outside databases Previous GC identifers: GC19M007712 GC19M007858 GC19M007648 GC19M007659
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Summariesfor FCER2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for FCER2 : The human leukocyte differentiation antigen CD23 (FCE2) is a key molecule for B-cell activation and growth. It is the low-affinity receptor for IgE. The truncated molecule can be secreted, then functioning as a potent mitogenic growth factor.(supplied by OMIM) UniProtKB/Swiss-Prot: FCER2_HUMAN, P06734 Function : This receptor has essential roles in the regulation of IgE production and in the differentiation of B-cells(it is a B-cell-specific antigen) Gene Wiki entry for FCER2 (CD23)
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Genomic Viewsfor FCER2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the FCER2 gene promoter: GATA-3 c-Rel RelA NF-kappaB NF-kappaB1 NF-kappaB2 NF-1 POU2F1 AREB6 ARP-1 Other transcription factors Search SABiosciences Chromatin IP Primers for FCER2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 19p13.3 Ensembl cytogenetic band: 19p13.2 HGNC cytogenetic band: 19p13.3 FCER2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19M007423: view genomic region
(about GC identifiers )
Start:
7,423,283 bp from pter
End:
7,436,591 bp from pter
Size:
13,309 bases
Orientation:
minus strand
1 alternative location : Chr 19- 7,753,663-7,766,997
RefSeq DNA sequence: NC_000019.9 NT_077812.2
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Proteinsfor FCER2 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: FCER2_HUMAN, P06734 (See
protein sequence )Recommended Name: Low affinity immunoglobulin epsilon Fc receptor Size : 321 amino acids; 36469 Da
Subcellular location : Cell membrane; Single-pass type II membrane protein. Secreted. Note=Also exists as a solubleexcreted form
Miscellaneous : There are two kinds of Fc receptors for IgE, which differ in both structure and function: high affinityreceptors on basophils and mast cells and low affinity receptors on lymphocytes and monocytes
PDB structures from and Proteopedia : 1HLI (3D)
 1KJE (3D)
 1T8C (3D)
 1T8D (3D)
 2H2R (3D)
 2H2T (3D)
 Alternative splicing : 2 isoforms : P06734-1 P06734-2 Explore the universe of human proteins at neXtProt for FCER2: NX_P06734 Post-translational modifications:
N- and O-glycosylated1
REFSEQ proteins: NP_001993.2 ENSEMBL proteins: ENSP00000377758 ENSP00000353178 ENSP00000264072 Human Recombinant Proteins 4 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
FCER2 for ontologies About GeneDecksing Antibodies for FCER2: Assays for FCER2:
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Protein
Domains/ Familiesfor FCER2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
FCER2 for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P06734 ProtoNet protein and cluster: P06734
1 Blocks protein family : IPB002353 Type II antifreeze protein signature UniProtKB/Swiss-Prot: FCER2_HUMAN, P06734 Similarity : Contains 1 C-type lectin domain
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Gene Functionfor FCER2 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: FCER2_HUMAN, P06734 Function : This receptor has essential roles in the regulation of IgE production and in the differentiation of B-cells(it is a B-cell-specific antigen)
Genatlas biochemistry entry for FCER2 :immunoglobulin E,low affinity Fc receptor 5 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
About this table
FCER2 for ontologies About GeneDecksing Animal Models: 3 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Fcer2a) :
FCER2 for phenotypes About GeneDecksing
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Pathways & Interactionsfor FCER2 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
FCER2 for pathways About GeneDecksing 3 Millipore Pathways for FCER2 2 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathways for FCER2 1 Kegg Pathway (Kegg details for FCER2) : SABiosciences Pathway-Focused PCR Arrays including FCER2 : PAHS-055A PAHS-406A Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for FCER2 SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for FCER2 5/7 Interacting proteins for FCER2 (ENSP00000264072 3 ) via UniProtKB, MINT, and/or STRING (see all 7 )About this table 4 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0002925 positive regulation of humoral immune response mediated by circulating immunoglobulin
IEA -- GO:0051000 positive regulation of nitric-oxide synthase activity
IDA 7544003 GO:0051712 positive regulation of killing of cells of another organism
IDA 7544003 GO:0051773 positive regulation of nitric-oxide synthase 2 biosynthetic process
IDA 7544003
About this table
FCER2 for ontologies About GeneDecksing
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Drugs & Compoundsfor FCER2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
FCER2 for compounds About GeneDecksing Browse Tocris compounds for FCER2 10/47 Novoseek chemical compound relationships for FCER2 gene (see all 47 )
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
batimastat
44.8
12
9464810 (4), 9834082 (2), 9677315 (1)
allergens
42.3
2
1477031 (1), 9036969 (1)
cefadroxil
34.7
2
2143009 (1), 8309718 (1)
fenoterol
34.3
1
7600375 (1)
pdtc
26.5
1
12872985 (1)
ionomycin
24.5
4
1709049 (1), 9162220 (1), 9174602 (1), 10363788 (1)
nedocromil sodium
23.7
3
1334783 (3)
tunicamycin
17.5
2
1386872 (1)
neopterin
17.5
1
8104879 (1)
genistein
16.8
6
9250823 (2), 8186375 (1), 11202232 (1), 8242759 (1)
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Transcriptsfor FCER2 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for FCER2 gene: NM_002002.4
Additional cDNA sequence: AK223207.1 AK310071.1 AK310707.1 BC014108.2 BC027879.1 BC062591.1 BC064417.1 M14766.1 M15059.1 X04772.1
6 DOTS entries : DT.40217556 DT.100742549 DT.97781460 DT.95086505 DT.95162895 DT.95251779
24/39 AceView cDNA sequences (see all 39 ):
BI524037 BC014108 NM_002002 BC062591 BC064417 BC027879 AW401362 M14766 M15059 BI767247 AW448907 BM008470 BI832853 BP338917 BQ711965 BF891578 BV202551 X04772 BI907608 BM920436 BQ712620 AI936513 BG755883 AI494545
highest scoring ESTs for FCER2 :M15059 BC014108 BC062591 BC064417 BF664254 BI832853 BI907608 BI910113 BM920436 M14766 Unigene Cluster for FCER2:
Fc fragment of IgE, low affinity II, receptor for (CD23) Hs.465778 [show with all ESTs ] Unigene Representative Sequence: BC027879 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for FCER2 (see all 6 ) ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b · 4c · 4d ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 SP1 :       -       -   -   -                   SP2 :       -       -   -   -                   SP3 :             -   -   -         -           SP4 :       -                             SP5 :       -                            
About this scheme ECgene alternative splicing isoforms for FCER2 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000394208 ENST00000360067 ENST00000346664 (uc010xjs.1 uc002mhn.2 uc010xjt.1 uc002mhm.2 uc010dvo.2 )
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Expression for FCER2 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section FCER2 expression in normal and diseased human tissues 1 / 2 / 3
6 probe-sets matching FCER2 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
34960_g_at2 , 3
U95-A
1
1.00
1.00
0.97
1.15
M15059
1.00
1.00
1.00
1
34959_at2 , 3
U95-A
1
1.00
1.00
0.97
0.87
M15059
1.00
1.00
1.00
1
206759_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_002002
0.60
1.00
0.82
1
206760_s_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_002002
0.60
1.00
0.82
1
206759_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
206760_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
About this table
FCER2 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GATACAGCCA SOURCE GeneReport for Unigene cluster: Hs.465778 Expression variation in blood from EXPOLDB for FCER2
SABiosciences Expression via Pathway-Focused PCR Arrays including FCER2 : PAHS-055A PAHS-406A
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Orthologsfor FCER2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for FCER2 gene from 3 species
About this table Species with no ortholog for FCER2 ENSEMBL Gene Tree for FCER2 (if available)
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Paralogsfor FCER2 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for FCER2 gene CLEC10A 2 CD207 2 ASGR1 2 ASGR2 2 CLEC4M 2 CD209 2 CLEC4F 2
FCER2 for paralogs About GeneDecksing
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Genomic Variantsfor FCER2 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 19 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for FCER2 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 11 variations for FCER2 5 CNVs : 73308 73307 8863 89053 78054 6 Indels : 89054 78055 78056 61669 60273 89052
QIAGEN SeqTarget long-range PCR primers for resequencing FCER2
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Disorders & Mutationsfor FCER2 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
FCER2 for disorders About GeneDecksing
OMIM: 151445 10/59 Novoseek disease relationships for FCER2 gene (see all 59 )
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
lymphocytic leukemia chronic b-cell
72.4
11
10052715 (2), 15621797 (2), 7517747 (1), 1717071 (1) (see all 9 )
leukemia lymphocytic chronic
67.5
17
11064465 (3), 2137545 (2), 8332446 (2), 1532590 (2) (see all 10 )
lymphoma small lymphocytic
66.8
3
8058704 (1), 16540722 (1), 10478136 (1)
leukaemia lymphocytic
65.3
17
9508354 (2), 10233382 (2), 7873388 (2), 10713330 (1) (see all 13 )
dermatitis atopic
64.6
24
1531123 (4), 9543080 (3), 8453305 (2), 8785171 (2) (see all 15 )
leukemia eosinophilic
61.9
2
8589271 (1), 9620595 (1)
asthma allergic
56.3
10
9450145 (3), 1334783 (1), 7653734 (1), 1401914 (1) (see all 7 )
chronic conjunctivitis
55.2
2
9191610 (1), 9154386 (1)
burkitt lymphoma
54.8
2
9036969 (1), 1354347 (1)
lymphoma
52.3
22
11211615 (3), 10478136 (3), 8058704 (2), 9508354 (2) (see all 14 )
About this table Human Gene Mutation Database (HGMD) : FCER2 Human Genome Epidemiology (HuGE) Navigator: FCER2 (15 documents) Export disorders and mutations for FCER2 gene to outside databases
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Medical Newsfor FCER2 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor FCER2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/497 PubMed articles for FCER2 gene, integrated from 7 sources (see all 497 ): (articles sorted by number of sources associating them with FCER2) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Structure-based modeling of the ligand binding domain of the human cell surface receptor CD23 and comparison of two independently derived molecular models. (PubMed id 8745401) 1 , 2 Bajorath J. and Aruffo A. (1996) Modeling of the lectin-homology domains of the human and murine low- affinity Fc epsilon receptor (Fc epsilon RII/CD23). (PubMed id 8142907) 1 , 2 Padlan E.A. and Helm B.A. (1993) Partial characterization of natural and recombinant human soluble CD23. (PubMed id 1417742) 1 , 2 Rose K.... Bonnefoy J.-Y. (1992) Two species of human Fc epsilon receptor II (Fc epsilon RII/CD23): tissue-specific and IL-4-specific regulation of gene expression. (PubMed id 2972386) 1 , 2 Yokota A.... Kishimoto T. (1988) Cloning and expression of the cDNA coding for a human lymphocyte IgE receptor. (PubMed id 3034567) 1 , 2 Luedin C.... Delespesse G. (1987) Human lymphocyte Fc receptor for IgE: sequence homology of its cloned cDNA with animal lectins. (PubMed id 2949326) 1 , 2 Ikuta K.... Yodoi J. (1987) Molecular structure of human lymphocyte receptor for immunoglobulin E. (PubMed id 2877743) 1 , 2 Kikutani H.... Kishimoto T. (1986) Adenosine triphosphate-induced shedding of CD23 and L-selectin (CD62L) from lymphocytes is mediated by the same receptor but different metalloproteases. (PubMed id 9680363) 1 , 7 Gu B....Wiley J.S. (1998) Pax-5 is a key regulator of the B cell-restricted expression of the CD23a isoform. (PubMed id 12731041) 1 , 7 Visan I....Tony H.P. (2003)
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External Searches for FCER2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing FCER2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
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Other Databases showing FCER2 gene
(According to HUGE )
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Specialized Databases showing FCER2 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
Functional Glycomics Gateway - Glycan Binding http://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Ctlect_221
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About This Section Patent Information for FCER2 gene: Search GeneIP for patents involving FCER2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor FCER2 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for FCER2
Recombinant Protein for FCER2
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