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Aliases & Descriptionsfor GFM2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions G elongation factor, mitochondrial 21 2 RRF22 EFG21 2 3 5 OTTHUMP000002229512 Elongation factor G 2, mitochondrial2 3 ribosome-releasing factor 2, mitochondrial2 RRF2mt2 3 MSTP0272 mEF-G 22 3 mitochondrial ribosome recycling factor 22 hEFG22 3 mitochondrial elongation factor G22 EF-G2mt2 3 MRRF22 FLJ216611 MST0272 OTTHUMP000002229522 Elongation factor G23
Export aliases for GFM2 gene to outside databases Previous GC identifer: GC05M074052
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Summariesfor GFM2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for GFM2 : Eukaryotes contain two protein translational systems, one in the cytoplasm and one in the mitochondria. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. This gene encodes one of mitochondrial translation elongation factors. Its role in the regulation of normal mitochondrial function and in different disease states attributed to mitochondrial dysfunction is not known. Alternative splicing results in at least three transcript variants encoding distinct isoforms. (provided by RefSeq) UniProtKB/Swiss-Prot: RRF2M_HUMAN, Q969S9 Function : Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination ofmitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in protein elongation and does not promote the GTP-dependent translocation of the nascent protein chain from the A-site to the P-site of the ribosome
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Genomic Viewsfor GFM2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the GFM2 gene promoter: PPAR-gamma2 PPAR-gamma1 XBP-1 NF-kappaB2 NF-kappaB NF-kappaB1 HNF-4alpha2 E4BP4 COUP-TF1 LCR-F1 Other transcription factors Search SABiosciences Chromatin IP Primers for GFM2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for GFM2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 5q13 Ensembl cytogenetic band: 5q13.3 HGNC cytogenetic band: 5q13 GFM2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05M069221: view genomic region
(about GC identifiers )
Start:
69,221,972 bp from pter
End:
69,268,020 bp from pter
Size:
46,049 bases
Orientation:
minus strand
1 alternative location : Chr 5- 74,017,029-74,063,196
RefSeq DNA sequence: NC_000005.9 NT_006713.15
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Proteinsfor GFM2 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: RRF2M_HUMAN, Q969S9 (See
protein sequence )Recommended Name: Ribosome-releasing factor 2, mitochondrial precursor Size : 779 amino acids; 86601 Da
Subcellular location : Mitochondrion (By similarity)
Secondary accessions : A0AR28 Q8N6D8 Q8WYI0 Q9H6Z1Alternative splicing : 5 isoforms : Q969S9-1 Q969S9-2 Q969S9-3 Q969S9-4 Q969S9-5 Explore the universe of human proteins at neXtProt for GFM2: NX_Q969S9 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_115756.2 NP_733781.1 NP_733792.1 ENSEMBL proteins: ENSP00000405808 ENSP00000421717 ENSP00000296805 ENSP00000296804 ENSP00000424877 ENSP00000427004 Human Recombinant Proteins 1 Gene Ontology (GO) cellular component term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005739 mitochondrion
IEA --
About this table
GFM2 for ontologies About GeneDecksing Antibodies for GFM2: Assays for GFM2:
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Protein
Domains/ Familiesfor GFM2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
GFM2 for domains About GeneDecksing 5/9 InterPro domains/families (see all 9 ):
Graphical View of Domain Structure for InterPro Entry Q969S9 ProtoNet protein and cluster: Q969S9
2 Blocks protein families : IPB000640 Elongation factor G IPB005517 Elongation factor G UniProtKB/Swiss-Prot: RRF2M_HUMAN, Q969S9 Similarity : Belongs to the GTP-binding elongation factor family. EF-G/EF-2 subfamily
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Gene Functionfor GFM2 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: RRF2M_HUMAN, Q969S9 Function : Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination ofmitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in protein elongation and does not promote the GTP-dependent translocation of the nascent protein chain from the A-site to the P-site of the ribosome
4 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
About this table
GFM2 for ontologies About GeneDecksing
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Pathways & Interactionsfor GFM2 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for GFM2 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for GFM2 3 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
About this table
GFM2 for ontologies About GeneDecksing
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Drugs & Compoundsfor GFM2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for GFM2
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Transcriptsfor GFM2 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for GFM2 gene (3 alternative transcripts): NM_032380.3 NM_170681.1 NM_170691.1
Additional cDNA sequence: AF111808.1 AF367997.1 AK025314.1 AK126251.1 AK307839.1 AK308422.1 AK315705.1 AY453587.1 BC015712.1 BC030612.1 CR592399.1 CR607096.1
24 DOTS entries : DT.92460306 DT.100059726 DT.100868799 DT.97862484 DT.120814589 DT.100776785 DT.100059733 DT.100798975
DT.92460289 DT.100848492 DT.92460310 DT.100776780 DT.95301878 DT.100664535 DT.92460296 DT.97788223 DT.101976061 DT.120814536 DT.402852 DT.75129626 DT.91641767 DT.92006302 DT.95173447 DT.95173454 24/210 AceView cDNA sequences (see all 210 ):
BM745868 AL043965 AA633107 AF074660 NM_032380 AI083526 AF111808 AI521928 AL529336 AA363953 BX422090 AI393493 BQ067943 BC015712 H92828 BM479840 BG743022 CR607096 CR592399 NM_170691 BM764430 AL039297 BM787714 BM772056
highest scoring ESTs for GFM2 :AA452769 AK025314 BE546763 BE893214 BF528515 BG699450 BI601873 BI670456 BI818587 BI821554 Unigene Cluster for GFM2:
G elongation factor, mitochondrial 2 Hs.277154 [show with all ESTs ] Unigene Representative Sequence: NM_032380 GeneLoc Exon Structure 5/11 Alternative Splicing Database (ASD) splice patterns (SP) for GFM2 (see all 11 ) ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c · 6d ^ 7 ^ 8 ^ 9 ^ 10a · 10b · 10c ^ 11 ^ 12a · 12b ^ 13 ^ 14a · 14b ^ 15 ^ 16a · 16b ^ 17a · 17b · SP1 :                 -             -                         SP2 :                             -                   -   -     SP3 :                                               -   -     SP4 :                                               -   -     SP5 :                                               -   -    
ExUns: 17c ^ 18 ^ 19a · 19b ^ 20a · 20b ^ 21 ^ 22a · 22b ^ 23 SP1 :                     SP2 :   -                   SP3 :   -                   SP4 :   -                   SP5 :                    
About this scheme ECgene alternative splicing isoforms for GFM2 11 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000427854 (uc003kdj.1 ) ENST00000510540 ENST00000509097 ENST00000296805 (uc003kdh.1 uc003kdi.1 uc010izj.1 uc010izk.1 uc010izl.1 )ENST00000515125 ENST00000345239 ENST00000506778 ENST00000513331 ENST00000509430 ENST00000514734 ENST00000506263
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Expression for GFM2 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section GFM2 expression in normal and diseased human tissues 1 / 2 / 3
8 probe-sets matching GFM2 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
87877_g_at2 , 3
U95-E
1
1.00
1.00
0.96
0.98
AA897407
0.60
0.60
0.60
1
87876_at2 , 3
U95-E
1
1.00
1.00
0.94
1.02
AA897407
0.60
0.60
0.60
1
231918_s_at2 , 3
U133-B
1
1.00
1.00
--
--
AK025314
0.80
1.00
0.91
1
225392_at2 , 3
U133-B
1
1.00
1.00
--
--
BF967912
0.60
0.75
0.68
1
231917_at2 , 3
U133-B
1
0.82
1.00
--
--
AK025314
0.80
1.00
0.91
1
231918_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
225392_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
231917_at2
U133Plus2
1
0.82
1.00
--
--
--
--
--
--
--
About this table
GFM2 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CTGTTCATCT SOURCE GeneReport for Unigene cluster: Hs.277154 UniProtKB/Swiss-Prot: RRF2M_HUMAN, Q969S9 Tissue specificity : Widely expressed
SABiosciences Custom PCR Arrays for GFM2
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Orthologsfor GFM2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for GFM2 gene from 5/19 species (see all 19 )
About this table Species with no ortholog for GFM2 ENSEMBL Gene Tree for GFM2 (if available)
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Paralogsfor GFM2 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section --
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Genomic Variantsfor GFM2 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 5 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for GFM2 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for GFM2: --
QIAGEN SeqTarget long-range PCR primers for resequencing GFM2
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Disorders & Mutationsfor GFM2 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
GFM2 for disorders About GeneDecksing
OMIM: 606544 Human Genome Epidemiology (HuGE) Navigator: GFM2 (1 document)Export disorders and mutations for GFM2 gene to outside databases
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Medical Newsfor GFM2 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor GFM2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 9 PubMed articles for GFM2 gene integrated from 7 sources : (articles sorted by number of sources associating them with GFM2) Identification and characterization of two novel human mitochondrial elongation factor genes, hEFG2 and hEFG1, phylogenetically conserved through evolution. (PubMed id 11735030) 1 , 2 , 3, 7 Hammarsund M.... Sangfelt O. (2001) EF-G2mt is an exclusive recycling factor in mammalian mitochondrial protein synthesis. (PubMed id 19716793) 1 , 2 Tsuboi M.... Takeuchi N. (2009) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Genetic variants in nuclear-encoded mitochondrial gen es influence AIDS progression. (PubMed id 20877624) 1 Hendrickson S.L....O'Brien S.J. (2010) The A3243G tRNALeu(UUR) MELAS mutation causes amino acid misincorporation and a combined respiratory chain assembly defect partially suppressed by overexpression of EFTu and EFG2. (PubMed id 18753147) 1 Sasarman F....Shoubridge E.A. (2008) The molecular basis for tissue specificity of the oxidative phosphorylation deficiencies in patients with mutations in the mitochondrial translation factor EFG1. (PubMed id 16632485) 1 Antonicka H....Shoubridge E.A. (2006) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 2 Ota T.... Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) A bacterial elongation factor G homologue exclusively functions in ribosome recycling in the spirochaete Borrelia burgdorferi. (PubMed id 20132446) 7 Suematsu T....Watanabe Y. (2010)
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External Searches for GFM2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing GFM2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing GFM2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing GFM2 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for GFM2 gene: Search GeneIP for patents involving GFM2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor GFM2 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
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