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Aliases & Descriptionsfor GINS4 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions GINS complex subunit 4 (Sld5 homolog)1 2 SLD51 2 3 5 MGC147991 2 DNA replication complex GINS protein SLD52 SLD5 homolog2 GINS complex subunit 43
Export aliases for GINS4 gene to outside databases Previous GC identifers: GC08P041506 GC08P041388
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Summariesfor GINS4 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for GINS4 : The yeast heterotetrameric GINS complex is made up of Sld5, Psf1 (GINS1; MIM 610608), Psf2 (GINS2; MIM 610609), and Psf3 (GINS3; MIM 610610). The formation of the GINS complex is essential for the initiation of DNA replication in yeast and Xenopus egg extracts (Ueno et al., 2005 (PubMed 16287864)). See GINS1 for additional information about the GINS complex.(supplied by OMIM) UniProtKB/Swiss-Prot: SLD5_HUMAN, Q9BRT9 Function : The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNAreplication forks. GINS4 is important for GINS complex assembly. GINS complex seems to bind preferentially to single-stranded DNA
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Genomic Viewsfor GINS4 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the GINS4 gene promoter: c-Myb STAT5B RORalpha1 RP58 HNF-1A Nkx6-1 STAT5A Egr-3 c-Myc Max1 Other transcription factors Search SABiosciences Chromatin IP Primers for GINS4 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for GINS4
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 8p11.21 Ensembl cytogenetic band: 8p11.21 HGNC cytogenetic band: 8p11.21 GINS4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 8 GeneLoc Exon Structure
GeneLoc location for GC08P039914: view genomic region
(about GC identifiers )
Start:
39,914,514 bp from pter
End:
39,930,224 bp from pter
Size:
15,711 bases
Orientation:
plus strand
1 alternative location : Chr 8+ 41,386,725-41,402,565
RefSeq DNA sequence: NC_000008.10 NT_167187.1
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Proteinsfor GINS4 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: SLD5_HUMAN, Q9BRT9 (See
protein sequence )Recommended Name: DNA replication complex GINS protein SLD5 Size : 223 amino acids; 26047 Da
Subunit : Component of the GINS complex which is a heterotetramer of GINS1, GINS2, GINS3 and GINS4. Forms a stablesubcomplex with GINS1. GINS complex interacts with DNA primase in vitro
Subcellular location : Cytoplasm (By similarity). Nucleus (By similarity)
Mass spectrometry : Mass=98373; Mass_error=13; Method=Electrospray; Range=1-223; Note=This is the measured mass for theGINS complex; Source=PubMed:17557111;
PDB structures from and Proteopedia : 2E9X (3D)
 2EHO (3D)
 2Q9Q (3D)
 
Secondary accessions : B2R8H5 Q8N648Alternative splicing : 2 isoforms : Q9BRT9-1 Q9BRT9-2 Explore the universe of human proteins at neXtProt for GINS4: NX_Q9BRT9
REFSEQ proteins: NP_115712.1 ENSEMBL proteins: ENSP00000428901 ENSP00000429581 ENSP00000429894 ENSP00000403443 ENSP00000276533 ENSP00000428754 Human Recombinant Proteins 3 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
GINS4 for ontologies About GeneDecksing Antibodies for GINS4: Assays for GINS4:
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Protein
Domains/ Familiesfor GINS4 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
GINS4 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9BRT9 ProtoNet protein and cluster: Q9BRT9
UniProtKB/Swiss-Prot: SLD5_HUMAN, Q9BRT9 Similarity : Belongs to the GINS4/SLD5 family
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Gene Functionfor GINS4 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: SLD5_HUMAN, Q9BRT9 Function : The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNAreplication forks. GINS4 is important for GINS complex assembly. GINS complex seems to bind preferentially to single-stranded DNA Induction : Significantly up-regulated in agressive melanomas
1 Gene Ontology (GO) molecular function term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005515 protein binding
IEA --
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GINS4 for ontologies About GeneDecksing
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Pathways & Interactionsfor GINS4 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for GINS4 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for GINS4 5/11 Interacting proteins for GINS4 (ENSP00000276533 3 Q9BRT9 2 ) via UniProtKB, MINT, and/or STRING (see all 11 )About this table 4 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0000084 S phase of mitotic cell cycle
TAS -- GO:0000278 mitotic cell cycle
TAS -- GO:0006260 DNA replication
IEA -- GO:0006271 DNA strand elongation involved in DNA replication
TAS --
About this table
GINS4 for ontologies About GeneDecksing
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Drugs & Compoundsfor GINS4 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for GINS4
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Transcriptsfor GINS4 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for GINS4 gene: NM_032336.2
Additional cDNA sequence: AK095334.1 AK299207.1 AK313373.1 BC005995.1 CR614079.1
5 DOTS entries : DT.209398 DT.40130185 DT.120632092 DT.100777124 DT.75166538
24/72 AceView cDNA sequences (see all 72 ):
AI122644 BX281988 CB108685 BE466748 AI206910 BE142513 BC027454 BX362611 BE671848 AW296892 CR614079 AA310026 CA416527 AA531549 AA232133 N39391 CA489427 AW962153 BQ933807 BF516364 BF932889 BX097150 AW002923 BQ772681
highest scoring ESTs for GINS4 :BG539217 BM553604 CA416527 CA489427 CF140376 AI656986 AA176910 BU955742 CN413400 AA730889 Unigene Cluster for GINS4:
GINS complex subunit 4 (Sld5 homolog) Hs.656996 [show with all ESTs ] Unigene Representative Sequence: NM_032336 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for GINS4 ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b SP1 :                         SP2 :     -                     SP3 :                        
About this scheme ECgene alternative splicing isoforms for GINS4 10 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000520631 ENST00000522642 ENST00000523277 ENST00000520710 ENST00000520354 ENST00000428802 ENST00000520736 ENST00000518430 ENST00000276533 (uc003xnx.2 uc003xny.2 )ENST00000518671
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Expression for GINS4 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section GINS4 expression in normal and diseased human tissues 1 / 2 / 3
6 probe-sets matching GINS4 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
87976_at2 , 3
U95-E
1
0.50
1.00
1.00
1.00
AI656986
0.80
0.80
0.80
1
211767_at2 , 3
U133-A
1
0.46
1.00
--
--
BC005995
0.60
0.75
0.68
1
235029_at2 , 3
U133-B
1
0.27
1.00
--
--
H52284
0.40
0.67
0.55
1
211767_at2
U133Plus2
1
0.46
1.00
--
--
--
--
--
--
--
235029_at2
U133Plus2
1
0.27
1.00
--
--
--
--
--
--
--
1554356_at*2
U133Plus2
NULL
0.00
0.00
--
--
--
--
--
--
--
About this table
GINS4 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TCCAACTGCA SOURCE GeneReport for Unigene cluster: Hs.656996 SABiosciences Custom PCR Arrays for GINS4
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Orthologsfor GINS4 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for GINS4 gene from 5/15 species (see all 15 )
About this table Species with no ortholog for GINS4 ENSEMBL Gene Tree for GINS4 (if available)
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Paralogsfor GINS4 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section --
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Genomic Variantsfor GINS4 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 8 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for GINS4 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for GINS4: --
QIAGEN SeqTarget long-range PCR primers for resequencing GINS4
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Disorders & Mutationsfor GINS4 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
GINS4 for disorders About GeneDecksing
OMIM: 610611 Export disorders and mutations for GINS4 gene to outside databases
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Medical Newsfor GINS4 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor GINS4 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10 PubMed articles for GINS4 gene integrated from 7 sources : (articles sorted by number of sources associating them with GINS4) Structure of the human GINS complex and its assembly and functional interface in replication initiation. (PubMed id 17417653) 1 , 2 Kamada K.... Hanaoka F. (2007) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 , 3 Strausberg R.L....Marra M.A. (2002) Comprehensive expression profiling of tumor cell lines identifies molecular signatures of melanoma progression. (PubMed id 17611626) 2 Ryu B.... Alani R.M. (2007) Crystal structure of the GINS complex and functional insights into its role in DNA replication. (PubMed id 17652513) 2 Chang Y.P.... Chen X.S. (2007) The human GINS complex binds to and specifically stimulates human DNA polymerase alpha-primase. (PubMed id 17170760) 2 De Falco M....Pisani F.M. (2007) Crystal structure of the human GINS complex. (PubMed id 17545466) 2 Choi J.M.... Cho Y. (2007) Molecular architecture of the human GINS complex. (PubMed id 17557111) 2 Boskovic J.... Montoya G. (2007) Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514) 1 Rual J.F....Vidal M. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004)
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External Searches for GINS4 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing GINS4 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing GINS4 gene
(According to HUGE )
About This Section --
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Specialized Databases showing GINS4 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for GINS4 gene: Search GeneIP for patents involving GINS4 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor GINS4 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for GINS4
ELISAs and CLIAs for GINS4
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