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Aliases & Descriptionsfor GJB4 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions gap junction protein, beta 4, 30.3kDa1 2 MGC211162 CX30.31 2 5 OTTHUMP000000041852 gap junction protein, beta 41 gap junction beta-4 protein2 gap junction protein, beta 4 (connexin 30.3)1 connexin-30.32 EKV2 Connexin-30.33 connexin 30.32 Cx30.33
Export aliases for GJB4 gene to outside databases Previous GC identifers: GC01U990071 GC01P034281 GC01P034651 GC00M9U0070 GC01P034894 GC01P034997 GC01P034999 GC01P035225
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Summariesfor GJB4 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for GJB4 : This gene encodes a transmembrane connexin protein that is a component of gap junctions. Mutations in this gene have been associated with erythrokeratodermia variabilis, progressive symmetric erythrokeratoderma and hearing impairment. (provided by RefSeq) UniProtKB/Swiss-Prot: CXB4_HUMAN, Q9NTQ9 Function : One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons,through which materials of low MW diffuse from one cell to a neighboring cell summary
for GJB4 : Gap channels (also known as gap junctions) are specalized cell-cell contacts between almost all eukaryoticcells that provide direct intracellular communication. Generally, gap channels allow the passive diffusionof molecules up to 1 kDa which includes nutrients, small metabolites (e.g. glucose), ions (K+, Ca2+) andsecond messengers (IP3, cAMP and cGMP). Gap channels allow electrical and biochemical coupling between cellsand in excitable tissues, such as neurons and the heart, enables the generation of synchronized and rapidresponses. Structurally, gap channels are composed of two hemichannels called 'connexons', which themselvesare formed from six connexin molecules. Homo- and heteromeric combinations are seen, which exhibit distinctpermeability, selectivity and functional properties. Pannexins are related to connexins and can also formgap junctions. However, their expression is limited to the brain. Furthermore, in nonchordate animals afamily of proteins called innexins form these channels. Gap channels are regulated throughpost-translational modifications of the C'-terminal cytoplasmic tail and phosphorylation modulates assemblyand their physiological properties. They are continuously synthesized and degraded, allowing tissues torapidly adapt to changing environmental conditions. Connexins play a key role in many physiologicalprocesses including cardiac and smooth muscle contraction, regulation of neuronal excitability, epithelialelectrolyte transport and keratinocyte differentiation. Mutations in connexin genes are associated withhuman diseases including sensorineural deafness, a variety of skin disorders, peripheral neuropathy andcardiovascular disease. Gene Wiki entry for GJB4
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Genomic Viewsfor GJB4 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the GJB4 gene promoter: ARP-1 Pax-2 FOXD1 Max c-Myc SREBP-1b SREBP-1c SREBP-1a LCR-F1 USF1 Other transcription factors Search SABiosciences Chromatin IP Primers for GJB4 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1p34.3 Ensembl cytogenetic band: 1p34.3 HGNC cytogenetic band: 1p35-p34 GJB4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P033342: view genomic region
(about GC identifiers )
Start:
33,342,857 bp from pter
End:
33,346,840 bp from pter
Size:
3,984 bases
Orientation:
plus strand
1 alternative location : Chr 1+ 35,225,342-35,229,325
RefSeq DNA sequence: NC_000001.10 NT_032977.9
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Proteinsfor GJB4 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: CXB4_HUMAN, Q9NTQ9 (See
protein sequence )Recommended Name: Gap junction beta-4 protein Size : 266 amino acids; 30419 Da
Subunit : A connexon is composed of a hexamer of connexins
Subcellular location : Cell membrane; Multi-pass membrane protein. Cell junction, gap junction
Secondary accessions : B3KQ82Explore the universe of human proteins at neXtProt for GJB4: NX_Q9NTQ9
REFSEQ proteins: NP_694944.1 ENSEMBL proteins: ENSP00000381117 ENSP00000345868 Human Recombinant Proteins 5 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
GJB4 for ontologies About GeneDecksing Antibodies for GJB4: Assays for GJB4:
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Protein
Domains/ Familiesfor GJB4 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
GJB4 for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9NTQ9 ProtoNet protein and cluster: Q9NTQ9
2 Blocks protein families : IPB002271 Gap junction beta-5 protein (Cx30.3) signature IPB013092 Connexin UniProtKB/Swiss-Prot: CXB4_HUMAN, Q9NTQ9 Similarity : Belongs to the connexin family. Beta-type (group I) subfamily
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Gene Functionfor GJB4 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: CXB4_HUMAN, Q9NTQ9 Function : One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons,through which materials of low MW diffuse from one cell to a neighboring cell
1 Gene Ontology (GO) molecular function term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005243 gap junction channel activity
NAS --
About this table
GJB4 for ontologies About GeneDecksing Animal Models: 1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Gjb4) :
GJB4 for phenotypes About GeneDecksing
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Pathways & Interactionsfor GJB4 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for GJB4 SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for GJB4 5 Interacting proteins for GJB4 (ENSP00000345868 3 ) via UniProtKB, MINT, and/or STRING About this table 3 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0007154 cell communication
NAS -- GO:0007608 sensory perception of smell
-- -- GO:0042048 olfactory behavior
-- --
About this table
GJB4 for ontologies About GeneDecksing
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Drugs & Compoundsfor GJB4 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Compounds for GJB4 available from Tocris Bioscience Compound Action
CAS
number Gap 26 Gap junction blocker; inhibits smooth muscle contraction and IP3-mediated ATP release [197250-15-0] Gap 27 Selective gap junction blocker [198284-64-9]
About this table
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Transcriptsfor GJB4 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for GJB4 gene: NM_153212.2
Additional cDNA sequence: AK057628.1 BC034709.1
1 DOTS entry : DT.91806925
6 AceView cDNA sequences :
AK057628 BX284064 NM_153212 BC034709 BG675316 BV185487
highest scoring ESTs for GJB4 :AK057628 BC034709 BG675316 BX284064 NM_153212 BE140729 CV029315 CV574426 DB194719 DB347980 Unigene Cluster for GJB4:
Gap junction protein, beta 4, 30.3kDa Hs.351203 [show with all ESTs ] Unigene Representative Sequence: AK057628 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000398037 ENST00000339480 (uc001bxw.3 uc001bxv.1 )
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Expression for GJB4 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section GJB4 expression in normal and diseased human tissues 1 / 2
2 probe-sets matching GJB4 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
216579_at*2
U133-A
NULL
0.00
0.00
--
--
--
--
--
--
--
216579_at*2
U133Plus2
NULL
0.00
0.00
--
--
--
--
--
--
--
About this table Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AGGCCACCCA SOURCE GeneReport for Unigene cluster: Hs.351203 SABiosciences Custom PCR Arrays for GJB4
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Orthologsfor GJB4 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for GJB4 gene from 4 species
About this table Species with no ortholog for GJB4 ENSEMBL Gene Tree for GJB4 (if available)
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Paralogsfor GJB4 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for GJB4 gene GJB3 2 GJB5 2 GJB6 2 GJB2 2 GJB7 2 GJB1 2
GJB4 for paralogs About GeneDecksing
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Genomic Variantsfor GJB4 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 1 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for GJB4 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for GJB4: --
QIAGEN SeqTarget long-range PCR primers for resequencing GJB4
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Disorders & Mutationsfor GJB4 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
GJB4 for disorders About GeneDecksing
OMIM: 605425 disorders : 133200 UniProtKB/Swiss-Prot: CXB4_HUMAN, Q9NTQ9
Defects in GJB4 are a cause of erythrokeratodermia variabilis (EKV) [MIM:133200]. EKV is a genodermatosis characterized by the appearance of two independent skin lesions: transient figurate erythematous patches and hyperkeratosis that is usually localized but occasionally occurs in its generalized form. Clinical presentation varies significantly within a family and from one family to another. Palmoplantar keratoderma is present in around 50% of cases
2 Novoseek disease relationships for GJB4 gene
About this table Human Gene Mutation Database (HGMD) : GJB4 Human Genome Epidemiology (HuGE) Navigator: GJB4 (3 documents) Export disorders and mutations for GJB4 gene to outside databases
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Medical Newsfor GJB4 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor GJB4 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/28 PubMed articles for GJB4 gene, integrated from 7 sources (see all 28 ): (articles sorted by number of sources associating them with GJB4) A common frameshift mutation and other variants in GJB4 (connexin 30.3): analysis of hearing impairment families. (PubMed id 11933201) 1 , 2 , 7 Lopez-Bigas N.... Estivill X. (2002) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 1 , 2 Gregory S.G.... Bentley D.R. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Mutation in the gene for connexin 30.3 in a family with erythrokeratodermia variabilis. (PubMed id 11017804) 1 , 2 Macari F.... Huber M. (2000) Genetic heterogeneity in erythrokeratodermia variabilis: novel mutations in the connexin gene GJB4 (Cx30.3) and genotype-phenotype correlations. (PubMed id 12648223) 1 , 7 Richard G....Uitto J. (2003) Clinical and genetic heterogeneity of erythrokeratoderma variabilis. (PubMed id 16297190) 1 , 7 Common J.E....Kelsell D.P. (2005) The missense mutation G12D in connexin30.3 can cause both erythrokeratodermia variabilis of Mendes da Costa and progressive symmetric erythrokeratodermia of Gottron. (PubMed id 19291775) 1 , 7 van Steensel M.A....van Geel M. (2009) Molecular interaction of connexin 30.3 and connexin 31 suggests a dominant-negative mechanism associated with erythrokeratodermia variabilis. (PubMed id 14583444) 1 , 7 Plantard L....Hohl D. (2003) Prospective variants screening of connexin genes in c hildren with hearing impairment: genotype/phenotype correlation. (PubMed id 20593197) 1 Yang J.J....Li S.Y. (2010)
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External Searches for GJB4 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing GJB4 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing GJB4 gene
(According to HUGE )
About This Section --
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Specialized Databases showing GJB4 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
GeneReviews http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/GJB4
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About This Section Patent Information for GJB4 gene: Search GeneIP for patents involving GJB4 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor GJB4 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Tocris compounds for GJB4
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