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GPR135 Gene

protein-coding GIFtS: 47

GC14M040094

G protein-coupled receptor 135
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

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(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
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Aliases & Descriptions
G protein-coupled receptor 135¹ ²
HUMNPIIY20¹ ²
PAFR¹
probable G-protein coupled receptor 135²
OTTHUMP00000179032²

External Ids:	HGNC: 19991¹	Entrez Gene: 64582²	Ensembl: ENSG00000181619⁷	UniProtKB: Q8IZ08³

Export aliases for GPR135 gene to outside databases

Previous GC identifers: GC14M057920 GC14M059000 GC14M059895

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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UniProtKB/Swiss-Prot: GP135_HUMAN, Q8IZ08

Function: Orphan receptor

Gene Wiki entry for GPR135

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
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Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the GPR135 gene promoter:
         ATF6   POU2F1   Pbx1a   GATA-1   AP-4   LUN-1   XBP-1   Meis-1   p53   PPAR-gamma1
         Other transcription factors

Search SABiosciences Chromatin IP Primers for GPR135

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for GPR135

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q23.1 Ensembl cytogenetic band: 14q23.1 HGNC cytogenetic band: 14q23.1

GPR135 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
GPR135 gene location

GeneLoc gene densities for chromosome 14 GeneLoc Exon Structure

GeneLoc location for GC14M040094: view genomic region (about GC identifiers)

Start:	40,094,106 bp from pter
End:	40,095,925 bp from pter
Size:	1,820 bases
Orientation:	minus strand

1 alternative location:

Chr14- 59,895,740-59,932,060

RefSeq DNA sequence:

NC_000014.8 NT_026437.12

(According to ¹UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
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UniProtKB/Swiss-Prot: GP135_HUMAN, Q8IZ08 (See protein sequence)

Recommended Name: Probable G-protein coupled receptor 135

Size: 494 amino acids; 51736 Da

Subcellular location: Cell membrane; Multi-pass membrane protein

Sequence caution: Sequence=BAC05800.1; Type=Erroneous gene model prediction;

Secondary accessions: Q7Z604 Q86SM3 Q8NH39

Explore the universe of human proteins at neXtProt for GPR135: NX_Q8IZ08

REFSEQ proteins: NP_072093.2

ENSEMBL proteins:

ENSP00000378548

Human Recombinant Proteins

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2 Gene Ontology (GO) cellular component terms (GO ID links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005886	plasma membrane	IEA	--
GO:0016021	integral to membrane	IEA	--

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GPR135 for ontologies About GeneDecksing

Antibodies for GPR135:

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	Uscn ELISAs and CLIAs for GPR135

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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GPR135 for domains About GeneDecksing

2 InterPro domains/families:

IPR017452 GPCR_Rhodpsn_supfam

IPR000276 7TM_GPCR_Rhodpsn

Graphical View of Domain Structure for InterPro Entry Q8IZ08

ProtoNet protein and cluster: Q8IZ08

UniProtKB/Swiss-Prot: GP135_HUMAN, Q8IZ08

Similarity: Belongs to the G-protein coupled receptor 1 family

(According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
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UniProtKB/Swiss-Prot: GP135_HUMAN, Q8IZ08

Function: Orphan receptor

Inhib. RNA:		Browse for Gene Knock-down Tools from Millipore
		Browse Nano Scale siRNA at Sigma-Aldrich Sigma-Aldrich siRNA Panels and esiRNA and siRNA for GPR135 Sigma-Aldrich shRNA Panels and shRNA for GPR135
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Gene
Editing:

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		OriGene GFP tagged cDNA clones in CMV expression vector: GPR135 OriGene Myc/DDK tagged cDNA clones in CMV expression vector: GPR135 OriGene untagged cDNA clones in CMV expression vector: GPR135 OriGene 3'-UTR clone: GPR135 Browse MicroRNA Expression Plasmids
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Cell
Lines:

GenScript Custom overexpressing Cell Line Services for GPR135

2 Gene Ontology (GO) molecular function terms (GO ID links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0004872	receptor activity	IEA	--
GO:0004930	G-protein coupled receptor activity	IEA	--

About this table

GPR135 for ontologies About GeneDecksing

(Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
About This Section

SABiosciences Pathway-Focused PCR Array including GPR135: PAHS-3009A

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for GPR135

2 Interacting proteins for GPR135 (Q8IZ08²) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
TPD52L1	Q16890²	MINT-63146
--	Q8TEN0²	MINT-65054

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1 Gene Ontology (GO) biological process term (GO ID links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007186	G-protein coupled receptor protein signaling pathway	--	--

About this table

GPR135 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse Small Molecules at Sigma-Aldrich

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for GPR135

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Millipore,
siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
About This Section

Inhib. RNA:		Browse for Gene Knock-down Tools from Millipore
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		OriGene 29mer shRNA kits in GFP-retroviral vector (see all 2): GPR135 OriGene shRNA RFP (see all 2): GPR135 OriGene basic RS shRNA (see all 2): GPR135 OriGene siRNA (see all 2): GPR135
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miRNA:		Sigma-Aldrich microRNA Mimics for GPR135 Sigma-Aldrich microRNA target validation systems for GPR135
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of GPR135
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Clones:		Browse FLAG tag genes at Sigma-Aldrich
		OriGene GFP tagged cDNA clones in CMV expression vector: GPR135 OriGene Myc/DDK tagged cDNA clones in CMV expression vector: GPR135 OriGene untagged cDNA clones in CMV expression vector: GPR135 OriGene 3'-UTR Clone: GPR135 Browse OriGene MicroRNA Expression Plasmids
		GenScript Custom cDNA clone Services for GPR135

Primers:		OriGene genome-wide validated SYBR primer pairs: GPR135 Browse OriGene validated miRNA SYBR primer pairs
		SABiosciences RT² qPCR Primer Assay for GPR135: PPH18577A

REFSEQ mRNAs for GPR135 gene:

NM_022571.5

Additional cDNA sequence:

AY255588.1 AY288418.1 M76676.1

2 DOTS entries:

DT.40122751 DT.40316805

24/134 AceView cDNA sequences (see all 134):

BG541945 AK058165 BI759737 BE464424 AI003805 AI370387 CD106968 AI983434

BM702100 AW452160 AI439138 BM666685 AI674918 BC012131 BM982826 AW614441

BI828749 AI804529 BF589913 BI918291 BC032831 AI355711 BF984068 NM_144581

highest scoring ESTs for GPR135:

M76676 AA634446 AI203035 AI537485 AW196331 AY255588 AY288418 BF516449 BF762536 BG722281

Unigene Cluster for GPR135:

G protein-coupled receptor 135

Hs.647573 [show with all ESTs]

Unigene Representative Sequence: NM_022571

GeneLoc Exon Structure

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000481661(uc001xed.2 uc010apj.2) ENST00000395116

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Primers from OriGene and/or SABiosciences )
About This Section

GPR135 expression in normal and diseased human tissues

¹ / ² / ³

7 probe-sets matching GPR135 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
32483_at²^{, 3}	U95-A	1	0.88	1.00	1.00	1.00	M76676	1.00	0.90	0.95	1
211659_at²^{, 3}	U133-A	1	1.00	1.00	--	--	M76676	1.00	0.90	0.95	1
214503_x_at²^{, 3}	U133-A	1	0.82	1.00	--	--	NM_022571	0.60	0.83	0.73	1
217641_at²^{, 3}	U133-A	1	0.36	1.00	--	--	AA634446	0.80	0.88	0.84	1
211659_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--
214503_x_at²	U133Plus2	1	0.82	1.00	--	--	--	--	--	--	--
217641_at²	U133Plus2	1	0.36	1.00	--	--	--	--	--	--	--

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GPR135 for expression About GeneDecksing

Data from Genenote (Publications) and GNF BioGPS
About these images

GPR135 gene electronic northern expression

About these images

CGAP SAGE TAG: TGGGCCCGCA

SOURCE GeneReport for Unigene cluster: Hs.647573

Expression variation in blood from EXPOLDB for GPR135

Primers:		OriGene genome-wide validated SYBR primer pairs: GPR135 Browse OriGene validated miRNA SYBR primer pairs
		SABiosciences RT² qPCR Primer Assay for GPR135: PPH18577A

SABiosciences Expression via Pathway-Focused PCR Array including GPR135: PAHS-3009A

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for GPR135 gene from 5 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
chimpanzee (Pan troglodytes)	GPR135¹	--	G protein-coupled receptor 135	98.83(n) 96.49(a)	452941 XM_509979.2 XP_509979.2
cow (Bos taurus)	GPR135¹	--	G protein-coupled receptor 135	89.89(n) 87.09(a)	781195 XM_001249596.1 XP_001249597.1
rat (Rattus norvegicus)	Gpr135¹	--	G protein-coupled receptor 135	83.48(n) 84.58(a)	314213 NM_181771.1 NP_861436.1
mouse (Mus musculus)	Gpr135^{1 , 5}	12 (30.20 cM)⁵	G protein-coupled receptor 135^{1, 5}	83.19(n)¹ 83.48(a)¹	238252¹ NM_181752.1¹ NP_861417.1¹ AK132237⁵ AK141053⁵ (see all 14)
zebrafish (Danio rerio)	LOC557986¹	--	similar to G protein-coupled receptor 135	65.96(n) 62.63(a)	557986 XM_681149.2 XP_686241.1

About this table Species with no ortholog for GPR135

ENSEMBL Gene Tree for GPR135 (if available)

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for GPR135 gene

GPR45² GPR63²

GPR135 for paralogs About GeneDecksing

(SNPs according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section

SNP ID	Valid	Chr 14 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
Genomic Data				Transcription Related Data				Allele Frequencies
			--	--	--		--	--
rs1253136^1,2	C,F,A,	59933542(+)	`ttgtaT/Cgatgt`	1	--	ng5¹		16		NS EA NA WA	786
rs1752427^1,2	C,F,A,	59930503(+)	`TGGTCA/GCTGCC`	2	A V	mis¹ ref¹ ese³		9		MN NS EA	1010
rs1752428^1,2	C,	59931931(+)	`GCGGCT/GGCGGC`	2	/Q /P	ref¹ mis¹ ese³		4		EA MN NA WA	1292
rs1752429^1,2	--	59931997(+)	`CGGCCA/GCTAGG`	1	--	ut5¹		0	--	--	--	--
rs3742645^1,2	C,	59931840(-)	`TCCTCC/AGCGGC`	2	/S	syn¹ ref¹ ese³		2		NA WA	4
rs3742646^1,2	--	59931697(-)	`GGGGGC/TGGCGG`	2	A V	ref¹ mis¹		0	--	--	--	--
rs4901927^1,2	C,F,A,	59932724(+)	`ATAAAA/GTGCAG`	1	--	ng5¹		7		NA WA	132
rs9672051^1,2	C,F,A,	59933474(+)	`ggtttG/Ctcagc`	1	--	ng5¹		8		NA EA WA	220
rs11274008^1,2	--	59933885(+)	`ATTTG-/GAGGT GACTAACTCTTC`	1	--	ng5¹		0	--	--	--	--
rs12888308^1,2	C,	59932221(+)	`GGCCCG/CGGTGT`	1	--	ng5¹		5		NA WA	80

About this table

HapMap Linkage Disequilibrium images for GPR135 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for GPR135: --

QIAGEN SeqTarget long-range PCR primers for resequencing GPR135

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
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GPR135 for disorders About GeneDecksing

OMIM: 607970

Human Genome Epidemiology (HuGE) Navigator: GPR135 (1 document)

Export disorders and mutations for GPR135 gene to outside databases

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶UniProtKB/TrEMBL, and/or ⁷Novoseek)
About This Section

6 PubMed articles for GPR135 gene integrated from 7 sources:
(articles sorted by number of sources associating them with GPR135)

Seven evolutionarily conserved human rhodopsin G protein-coupled receptors lacking close relatives. (PubMed id 14623098)^{1, 2, 3} Fredriksson R....Schioeth H.B. (2003)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
The G protein-coupled receptor repertoires of human and mouse. (PubMed id 12679517)^{1, 2} Vassilatis D.K.... Gaitanaris G.A. (2003)
Association of genetic variants with hemorrhagic stro ke in Japanese individuals. (PubMed id 20198315)¹ Yoshida T....Yamada Y. (2010)
A human protein-protein interaction network: a resource for annotating the proteome. (PubMed id 16169070)¹ Stelzl U.... Wanker E.E. (2005)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 64582	HGNC: 19991	AceView: GPR135andC14orf149	Ensembl:ENSG00000181619	euGenes: HUgn64582
ECgene: GPR135	H-InvDB: GPR135

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Intellectual Property for GPR135 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from XenneX, Inc.)

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Patent Information for GPR135 gene:
Search GeneIP for patents involving GPR135

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
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GPR135 Gene

protein-coding GIFtS: 47

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GPR135 Gene

protein-coding GIFtS: 47

Aliases & Descriptionsfor GPR135 gene

Summariesfor GPR135 gene

Genomic Viewsfor GPR135 gene

Proteinsfor GPR135 gene

Protein Domains/Familiesfor GPR135 gene

Gene Functionfor GPR135 gene

Pathways & Interactionsfor GPR135 gene

Drugs & Compoundsfor GPR135 gene

Transcriptsfor GPR135 gene

Expression for GPR135 gene

Orthologsfor GPR135 gene

Paralogsfor GPR135 gene

Genomic Variantsfor GPR135 gene

Disorders & Mutationsfor GPR135 gene

Medical Newsfor GPR135 gene

Publicationsfor GPR135 gene

External Searches for GPR135 gene

Genome Databases showing GPR135 gene

Other Databases showing GPR135 gene

Specialized Databases showing GPR135 gene

Intellectual Propertyfor GPR135 gene

Productsfor GPR135 gene

View Random Gene

Aliases &
Descriptions
for GPR135 gene

Summaries
for GPR135 gene

Genomic Views
for GPR135 gene

Proteins
for GPR135 gene

Protein Domains/
Families
for GPR135 gene

Gene Function
for GPR135 gene

Pathways & Interactions
for GPR135 gene

Drugs & Compounds
for GPR135 gene

Transcripts
for GPR135 gene

Expression
for GPR135 gene

Orthologs
for GPR135 gene

Paralogs
for GPR135 gene

Genomic Variants
for GPR135 gene

Disorders & Mutations
for GPR135 gene

Medical News
for GPR135 gene

Publications
for GPR135 gene

Intellectual Property
for GPR135 gene

Products
for GPR135 gene