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Aliases & Descriptionsfor GTF2F2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions general transcription factor IIF, polypeptide 2, 30kDa1 2 TFIIF-beta2 3 RAP301 2 3 ATP-dependent helicase GTF2F22 3 BTF41 2 general transcription factor IIF, polypeptide 1 (74kD subunit)1 TFIIF1 2 general transcription factor IIF subunit 22 General transcription factor IIF 30 kDa subunit2 3 TF2F22 Transcription initiation factor RAP302 3 EC 3.6.4.123 Transcription initiation factor IIF subunit beta2 3
Export aliases for GTF2F2 gene to outside databases Previous GC identifers: GC13P043694 GC13P039681 GC13P044631 GC13P043492 GC13P044592 GC13P045694
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Summariesfor GTF2F2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: T2FB_HUMAN, P13984 Function : TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it tothe initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity Gene Wiki entry for GTF2F2
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Genomic Viewsfor GTF2F2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the GTF2F2 gene promoter: E2F-3a E2F-5 E2F-4 E2F-2 E2F-1 E2F Nkx6-1 Cdc5 RFX1 HOXA9B Other transcription factors Search SABiosciences Chromatin IP Primers for GTF2F2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 13q14 Ensembl cytogenetic band: 13q14.12 HGNC cytogenetic band: 13q14 GTF2F2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 13 GeneLoc Exon Structure
GeneLoc location for GC13P026496: view genomic region
(about GC identifiers )
Start:
26,496,415 bp from pter
End:
26,659,718 bp from pter
Size:
163,304 bases
Orientation:
plus strand
1 alternative location : Chr 13+ 45,694,650-45,858,237
RefSeq DNA sequence: NC_000013.10 NT_024524.14
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Proteinsfor GTF2F2 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: T2FB_HUMAN, P13984 (See
protein sequence )Recommended Name: General transcription factor IIF subunit 2 Size : 249 amino acids; 28380 Da
Subunit : Heterodimer of an alpha and a beta subunit. Interacts with HTATSF1 and GPBP1 (By similarity)
Subcellular location : Nucleus
PDB structures from and Proteopedia : 1BBY (3D)
 1F3U (3D)
 2BBY (3D)
 
Secondary accessions : A6NNS5 Q5W0H3Explore the universe of human proteins at neXtProt for GTF2F2: NX_P13984 Post-translational modifications:
Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_004119.1 ENSEMBL proteins: ENSP00000340823 Human Recombinant Proteins 4 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
GTF2F2 for ontologies About GeneDecksing Antibodies for GTF2F2: Assays for GTF2F2:
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Protein
Domains/ Familiesfor GTF2F2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
GTF2F2 for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P13984 ProtoNet protein and cluster: P13984
1 Blocks protein family : IPB003196 Transcription initiation factor IIF UniProtKB/Swiss-Prot: T2FB_HUMAN, P13984 Similarity : Belongs to the TFIIF beta subunit family
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Gene Functionfor GTF2F2 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: T2FB_HUMAN, P13984 Function : TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it tothe initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity Catalytic activity : ATP + H(2)O = ADP + phosphateEnzyme Number (IUBMB): EC 3.6.4.12
Genatlas biochemistry entry for GTF2F2 :general transcription factor IIF,polypeptide 2(30kDa),increasing the average rate of RNA chain elongation across DNA templates 5/10 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 10 ):
About this table
GTF2F2 for ontologies About GeneDecksing
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Pathways & Interactionsfor GTF2F2 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
GTF2F2 for pathways About GeneDecksing 1 Millipore Pathway for GTF2F2 2 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathways for GTF2F2 1 Kegg Pathway (Kegg details for GTF2F2) : SABiosciences Custom Pathway-Focused PCR Arrays for GTF2F2 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for GTF2F2 SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for GTF2F2 3 Interacting proteins for GTF2F2 (P13984 1 , 2 ) via UniProtKB, MINT, and/or STRING About this table 5/12 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 12 ):
GO ID Qualified GO term Evidence PubMed IDs GO:0000398 nuclear mRNA splicing, via spliceosome
TAS -- GO:0006350 transcription
TAS -- GO:0006366 transcription from RNA polymerase II promoter
TAS -- GO:0006367 transcription initiation from RNA polymerase II promoter
TAS -- GO:0006368 RNA elongation from RNA polymerase II promoter
TAS --
About this table
GTF2F2 for ontologies About GeneDecksing
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Drugs & Compoundsfor GTF2F2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
GTF2F2 for compounds About GeneDecksing Browse Tocris compounds for GTF2F2 3 Novoseek chemical compound relationships for GTF2F2 gene
About this table
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Transcriptsfor GTF2F2 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for GTF2F2 gene: NM_004128.2
Additional cDNA sequence: AK291545.1 BC001771.1 BT019525.1 CR598374.1 CR609785.1 X16901.1 X59745.1
7 DOTS entries : DT.114042 DT.100796480 DT.100834650 DT.40130785 DT.99997299 DT.120789664 DT.120789671
24/152 AceView cDNA sequences (see all 152 ):
CF272406 BU184889 CR598374 BG678009 CA444768 CD368832 CB125610 AW004843 BQ416647 AA831833 BE906625 CA443379 N73082 BQ422614 BX089414 CB134833 BQ001106 BX281310 CB126197 AA831445 CB125216 BU686020 BI755137 BM457007
highest scoring ESTs for GTF2F2 :X16901 AA478656 AA479196 AA831445 AA831833 AA831834 AA868805 AI126584 AI394702 AI400144 Unigene Cluster for GTF2F2:
General transcription factor IIF, polypeptide 2, 30kDa Hs.654582 [show with all ESTs ] Unigene Representative Sequence: NM_004128 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for GTF2F2 ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10a · 10b SP1 :       -   -     -   -             SP2 :       -   -     -   -             SP3 :         -     -   -             SP4 :                           SP5 :             -   -            
About this scheme ECgene alternative splicing isoforms for GTF2F2 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000340473 (uc001uzv.2 uc001uzw.2 ) ENST00000494087 ENST00000461904
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Expression for GTF2F2 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section GTF2F2 expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching GTF2F2 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
36510_at2 , 3
U95-A
1
0.75
1.00
1.00
1.00
X16901
1.00
0.90
0.95
1
209595_at2 , 3
U133-A
1
1.00
1.00
--
--
BC001771
0.80
0.88
0.84
1
209595_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
About this table
GTF2F2 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CTAGTGAAAC SOURCE GeneReport for Unigene cluster: Hs.654582 Expression variation in blood from EXPOLDB for GTF2F2
SABiosciences Custom PCR Arrays for GTF2F2
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Orthologsfor GTF2F2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for GTF2F2 gene from 5/14 species (see all 14 )
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
GTF2F21
--
general transcription factor IIF, polypeptide 2, 30kDa less
93.57(n) 97.99(a)
609164 XM_846373.1 XP_851466.1
chimpanzee (Pan troglodytes)
GTF2F21
--
general transcription factor IIF, polypeptide 2, 30kDa less
99.6(n) 100(a)
741868 XM_001154142.1 XP_001154142.1
cow (Bos taurus)
GTF2F21
--
general transcription factor IIF, polypeptide 2, 30kDa less
92.24(n) 97.59(a)
509259 NM_001038064.1 NP_001033153.1
rat (Rattus norvegicus)
Gtf2f21
--
general transcription factor IIF, polypeptide 2
90.36(n) 97.59(a)
81674 NM_031042.3 NP_112304.2
mouse (Mus musculus)
Gtf2f21 , 5
14 (40.29 cM) 5
general transcription factor IIF, polypeptide 21, 5
89.96(n) 1 97.99(a) 1
68705 1 NM_026816.3 1 NP_081092.1 1 AI326315 5 AI841186 5 (see all 12 )
About this table Species with no ortholog for GTF2F2 ENSEMBL Gene Tree for GTF2F2 (if available)
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Paralogsfor GTF2F2 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Pseudogenes 2 related pseudogenes
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Genomic Variantsfor GTF2F2 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 13 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for GTF2F2 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for GTF2F2: --
QIAGEN SeqTarget long-range PCR primers for resequencing GTF2F2
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Disorders & Mutationsfor GTF2F2 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
GTF2F2 for disorders About GeneDecksing
OMIM: 189969 Export disorders and mutations for GTF2F2 gene to outside databases
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Medical Newsfor GTF2F2 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor GTF2F2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/115 PubMed articles for GTF2F2 gene, integrated from 7 sources (see all 115 ): (articles sorted by number of sources associating them with GTF2F2) Tat-SF1 protein associates with RAP30 and human SPT5 proteins. (PubMed id 10454543) 1 , 2 , 7 Kim J.B.... Sharp P.A. (1999) Global phosphoproteome of HT-29 human colon adenocarcinoma cells. (PubMed id 16083285) 1 , 2 Kim J.-E.... White F.M. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Structural homology between the Rap30 DNA-binding domain and linker histone H5: implications for preinitiation complex assembly. (PubMed id 9689043) 1 , 2 Groft C.M.... Werner M.H. (1998) Genes encoding general initiation factors for RNA polymerase II transcription are dispersed in the human genome. (PubMed id 8162052) 1 , 3 Heng H.H....Tsui L.C. (1994) Nucleotide and amino acid sequence of RAP30. (PubMed id 1840667) 1 , 2 Horikoshi M.... Roeder R.G. (1991) Structure and associated DNA-helicase activity of a general transcription initiation factor that binds to RNA polymerase II. (PubMed id 2477704) 1 , 2 Sopta M.... Greenblatt J. (1989) Interaction with general transcription factor IIF (TFIIF) is required for the suppression of activated transcription by RPB5-mediating protein (RMP). (PubMed id 12737519) 1 , 7 Wei W....Murakami S. (2003) Mutational analysis of human RNA polymerase II subunit 5 (RPB5): the residues critical for interactions with TFIIF subunit RAP30 and hepatitis B virus X protein. (PubMed id 16169872) 1 , 7 Le T.T....Murakami S. (2005) Distinct domains of hTAFII100 are required for functional interaction with transcription factor TFIIF beta (RAP30) and incorporation into the TFIID complex. (PubMed id 8758937) 1 , 7 Dubrovskaya V....Tora L. (1996)
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External Searches for GTF2F2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing GTF2F2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing GTF2F2 gene
(According to HUGE )
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Specialized Databases showing GTF2F2 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for GTF2F2 gene: Search GeneIP for patents involving GTF2F2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor GTF2F2 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
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