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GUCA1C Gene

protein-coding   GIFtS: 47

GC03M106000
guanylate cyclase activator 1C
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Products    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases & Descriptions
guanylate cyclase activator 1C1 2 3     MGC1201592
GCAP31 2 3 5     OTTHUMP000002143392
GCAP 32 3     guanylyl cyclase-activating protein 32
MGC1201582     

External Ids:    HGNC: 46801   Entrez Gene: 96262   Ensembl: ENSG000001384727   UniProtKB: O958433   

Export aliases for GUCA1C gene to outside databases

Previous GC identifers: GC03M105420 GC03M108154 GC03M109907 GC03M109948 GC03M109949 GC03M110109 GC03M108626


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: GUC1C_HUMAN, O95843
Function: Stimulates guanylyl cyclase 1 (GC1) and GC2 when free calcium ions concentration is low and inhibits guanylyl
cyclases when free calcium ions concentration is elevated. This Ca(2+)-sensitive regulation of guanylyl cyclase (GC)
is a key event in recovery of the dark state of rod photoreceptors following light exposure


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the GUCA1C gene promoter:
         IRF-7A   STAT5A   Pax-6   STAT5B   RP58   AhR   Arnt   Cart-1   POU2F1   POU3F2   
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for GUCA1C

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q13.1   Ensembl cytogenetic band:  3q13.13   HGNC cytogenetic band: 3q13.1

GUCA1C Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
GUCA1C gene location

GeneLoc gene densities for chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03M106000:  view genomic region     (about GC identifiers)

Start:
106,000,289 bp from pter
End:
106,046,248 bp from pter
Size:
45,960 bases
Orientation:
minus strand

1 alternative location:
Chr3- 108,626,639-108,672,742     
RefSeq DNA sequence:
NC_000003.11  NT_005612.16  

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
About This Section

UniProtKB/Swiss-Prot: GUC1C_HUMAN, O95843 (See protein sequence)
Recommended Name: Guanylyl cyclase-activating protein 3  
Size: 209 amino acids; 23822 Da
Miscellaneous: Binds three calcium ions (By similarity)
PDB structures from and Proteopedia :
2GGZ (3D)    
Secondary accessions: O95844 Q9UNM0
Alternative splicing: 2 isoforms:  O95843-1   O95843-2   

Explore the universe of human proteins at neXtProt for GUCA1C: NX_O95843 

REFSEQ proteins: NP_005450.3  

ENSEMBL proteins: 
ENSP00000261047 ENSP00000417761 ENSP00000377535 


Human Recombinant Proteins 
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Uscn ELISAs and CLIAs for GUCA1C 


(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

GUCA1C for domains           About GeneDecksing

5/6 InterPro domains/families (see all 6):
 IPR001125 Recoverin
 IPR011992 EF-hand-like_dom
 IPR002048 EF_hand_Ca-bd
 IPR018248 EF-hand
 IPR018249 EF_HAND_2

Graphical View of Domain Structure for InterPro Entry O95843

ProtoNet protein and cluster: O95843

UniProtKB/Swiss-Prot: GUC1C_HUMAN, O95843
Similarity: Contains 4 EF-hand domains


(According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
About This Section

UniProtKB/Swiss-Prot: GUC1C_HUMAN, O95843
Function: Stimulates guanylyl cyclase 1 (GC1) and GC2 when free calcium ions concentration is low and inhibits guanylyl
cyclases when free calcium ions concentration is elevated. This Ca(2+)-sensitive regulation of guanylyl cyclase (GC)
is a key event in recovery of the dark state of rod photoreceptors following light exposure

Inhib.
RNA:
    
Browse for Gene Knock-down Tools from Millipore
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Sigma-Aldrich esiRNA and siRNA for GUCA1C
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QIAGEN Custom miScript Target Protector blocks miRNA-binding site of GUCA1C 
Search SABiosciences for Assays for microRNAs that regulate GUCA1C

Gene
Editing:
Browse CompoZr Knockout ZFN at Sigma-Aldrich 

Clones:Browse Clones for the Expression of Recombinant Proteins Available from Millipore
Browse iPSC Reprogramming Factors at Sigma-Aldrich
OriGene GFP tagged cDNA clones in CMV expression vector: GUCA1C
OriGene Myc/DDK tagged cDNA clones in CMV expression vector: GUCA1C
OriGene untagged cDNA clones in CMV expression vector: GUCA1C
Browse 3'-UTR reporter clones for miRNA target validation 
Browse MicroRNA Expression Plasmids 
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Cell
Lines:
  
GenScript Custom overexpressing Cell Line Services for GUCA1C 

Genatlas biochemistry entry for GUCA1C:
guanylate cyclase activating protein 1C,specifically expressed in phosphoreceptors

2 Gene Ontology (GO) molecular function terms (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005509 calcium ion binding IEA--
GO:0008048 calcium sensitive guanylate cyclase activator activity TAS10037746
About this table

GUCA1C for ontologies           About GeneDecksing


(Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
About This Section


GUCA1C for pathways           About GeneDecksing

1 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathway for  GUCA1C
    Phototransduction Pathway

2 Kegg Pathways  (Kegg details for GUCA1C):
    hsa04740 Olfactory transduction
hsa04744 Phototransduction

    SABiosciences Custom Pathway-Focused PCR Arrays for GUCA1C 

    Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for GUCA1C
    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for GUCA1C

5/7 Interacting proteins for GUCA1C (ENSP000002610473) via UniProtKB, MINT, and/or STRING (see all 7)
InteractantInteraction Details
GeneCardExternal ID(s)
GUCA1AENSP000003620563STRING: ENSP00000362056
GUCA1BENSP000002303613STRING: ENSP00000230361
GUCY2FENSP000002180063STRING: ENSP00000218006
CNGA3ENSP000003661403STRING: ENSP00000366140
CNGA4ENSP000003692683STRING: ENSP00000369268
About this table

2 Gene Ontology (GO) biological process terms (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0007165 signal transduction TAS10037746
GO:0007601 visual perception TAS10037746
About this table

GUCA1C for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

GUCA1C for compounds           About GeneDecksing

Browse Small Molecules at Sigma-Aldrich
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for GUCA1C
1 Novoseek chemical compound relationship for GUCA1C gene
Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
guanylate 58.7 2 15486694 (1), 11860507 (1)
About this table



(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Millipore,
siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
About This Section

Inhib.
RNA:
     
Browse for Gene Knock-down Tools from Millipore
Browse Nano Scale siRNA at Sigma-Aldrich
Sigma-Aldrich esiRNA and siRNA for GUCA1C
Sigma-Aldrich shRNA for GUCA1C
OriGene 29mer shRNA kits in GFP-retroviral vector: GUCA1C
OriGene shRNA RFP: GUCA1C
OriGene basic RS shRNA: GUCA1C
OriGene siRNA: GUCA1C
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of GUCA1C 
miRNA: Sigma-Aldrich microRNA Mimics for GUCA1C
Sigma-Aldrich microRNA target validation systems for GUCA1C 
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of GUCA1C 
Search SABiosciences for Assays for microRNAs that regulate GUCA1C
Clones: Browse FLAG tag genes at Sigma-Aldrich
OriGene GFP tagged cDNA clones in CMV expression vector: GUCA1C
OriGene Myc/DDK tagged cDNA clones in CMV expression vector: GUCA1C
OriGene untagged cDNA clones in CMV expression vector: GUCA1C
Browse 3'-UTR reporter clones for miRNA target validation 
Browse OriGene MicroRNA Expression Plasmids 
GenScript Custom cDNA clone Services for GUCA1C 
Primers: OriGene genome-wide validated SYBR primer pairs: GUCA1C
Browse OriGene validated miRNA SYBR primer pairs 
SABiosciences RT2 qPCR Primer Assay for GUCA1C: PPH14723A

REFSEQ mRNAs for GUCA1C gene: 

NM_005459.3  

Additional cDNA sequence: 

AF110002.1 AF110003.1 BC103993.1 BC103994.1 

3 DOTS entries:

DT.95362461  DT.432360  DT.100748097 

24/26 AceView cDNA sequences (see all 26):

AI917103 C20850 BM695917 BU726199 AW963468 AA365180 BM663382 BX282721 
AF110003 BM704487 AW337860 NM_005459 AA364464 BU736658 AI969019 AA364442 
BM666986 AF110002 BU160027 AA365179 AW594508 AV732101 BM685830 BG217579 

highest scoring ESTs for GUCA1C:

AA364442 AF110002 AF110003 AI917103 AV732101 BM695917 BX282721 AA364464 AA365179 AA365180 

Unigene Cluster for GUCA1C:

Guanylate cyclase activator 1C
Hs.233363  [show with all ESTs]
Unigene Representative Sequence: NM_005459


GeneLoc Exon Structure

2 Alternative Splicing Database (ASD) splice patterns (SP) for GUCA1C

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4a · 4b
SP1:                          -               
SP2:                                          

About this scheme

ECgene alternative splicing isoforms for GUCA1C
3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000261047(uc003dxj.2 uc003dxk.2) ENST00000471108 ENST00000393963


(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Primers from OriGene and/or SABiosciences )
About This Section

GUCA1C expression in normal and diseased human tissues

1  / 2  / 3

3 probe-sets matching GUCA1C gene

Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
87700_at2, 3 U95-E 1 0.62 1.00 1.00 1.00 AI917103 0.80 1.00 0.91 1
223928_s_at2, 3 U133-B 1 0.91 1.00 -- -- AF110002 0.80 1.00 0.91 1
223928_s_at2 U133Plus2 1 0.91 1.00 -- -- -- -- -- -- --
About this table

GUCA1C for expression           About GeneDecksing

Data from Genenote  (Publications) and GNF BioGPS
    About these images
GUCA1C gene expression
GUCA1C gene electronic northern expression
GUCA1C gene sage expression
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.233363

UniProtKB/Swiss-Prot: GUC1C_HUMAN, O95843
Tissue specificity: Retina

Primers: OriGene genome-wide validated SYBR primer pairs: GUCA1C
Browse OriGene validated miRNA SYBR primer pairs 
SABiosciences RT2 qPCR Primer Assay for GUCA1C: PPH14723A
    SABiosciences Custom PCR Arrays for GUCA1C 


(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for GUCA1C gene from 3 species
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
GUCA1C1   -- guanylate cyclase activator 1C 87.78(n)
82.2(a)
487968  XM_545090.2  XP_545090.2 
chicken
(Gallus gallus)
GUCA1C1   -- guanylate cyclase activator 1C 70.47(n)
60.87(a)
427960  XM_425532.2  XP_425532.2 
zebrafish
(Danio rerio)
guca1d1   -- guanylate cyclase activator 1d 57.61(n)
48.37(a)
494573  NM_001011661.1  NP_001011661.1 
About this table        Species with no ortholog for GUCA1C

ENSEMBL Gene Tree for GUCA1C (if available)

(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
Paralogs for GUCA1C gene
EFCAB12  GUCA1B2  GUCA1A2  

GUCA1C for paralogs           About GeneDecksing



(SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section

10/569 NCBI SNPs in GUCA1C are shown (see all 569)
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidChr 3 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
----------
rs7512981,2
C,F,108656151(+) ATCCCC/TGGGTG 1 -- int122Minor allele frequency- N:0.00EA NA NS WA 2786
rs7512991,2
C,F,A,108656519(+) AGGCAC/TTGTGC 1 -- int18Minor allele frequency- T:0.30MN NS EA NA WA 728
rs9211711,2
C,F,O,A,108636466(+) TCTCAC/TTTGGC 1 -- int114Minor allele frequency- T:0.23MN NA NS EA 912
rs14705651,2
C108651187(+) aaaaaA/Caaaaa 1 -- int10--------
rs14705661,2
--108651188(+) aaaacA/Caaaaa 1 -- int1 trp30--------
rs14705671,2
C,F,O,A,H,108652121(+) CCATTC/TTACCC 1 -- int130Minor allele frequency- T:0.42EA NA NS WA 1722
rs15422151,2
C,F,A,108670334(+) GAAAAC/ATGCAG 1 -- int17Minor allele frequency- A:0.11NS EA NA WA 502
rs15422161,2
C,F,O,108670602(+) GCAGCA/GGAACT 1 -- int120Minor allele frequency- G:0.46MN NS EA NA WA 2172
rs15422171,2
C,F,O,A,108671882(+) ATTTTT/CCCCAA 1 -- int112Minor allele frequency- C:0.41EA NA WA 1288
rs20682211,2
C,F,108635736(+) TCATTT/CGGGAA 1 -- int18Minor allele frequency- C:0.08NS EA NA WA 584
About this table

HapMap Linkage Disequilibrium images for GUCA1C (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 2 variations for GUCA1C
     2 CNVs: 50899 98399

QIAGEN SeqTarget long-range PCR primers for resequencing GUCA1C 

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
About This Section

GUCA1C for disorders           About GeneDecksing

OMIM: 605128


Export disorders and mutations for GUCA1C gene to outside databases

(Possibly Related Articles in Doctor's Guide)
About This Section
  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
About This Section

6 PubMed articles for GUCA1C gene integrated from 7 sources:
(articles sorted by number of sources associating them with GUCA1C)
  1. Molecular characterization of a third member of the guanylyl cyclase- activating protein subfamily. (PubMed id 10037746)1, 2, 3, 7 Haeseleer F.... Palczewski K. (1999)
  2. Characterization of retinal guanylate cyclase-activat ing protein 3 (GCAP3) from zebrafish to man. (PubMed id 11860507)1, 3, 7 Imanishi Y....Palczewski K. (2002)
  3. The crystal structure of GCAP3 suggests molecular mechanism of GCAP- linked cone dystrophies. (PubMed id 16626734)1, 2 Stephen R.... Sousa M.C. (2006)
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
  5. Diversity of guanylate cyclase-activating proteins (GCAPs) in teleost fish: characterization of three novel GCAPs (GCAP4, GCAP5, GCAP7) from zebrafish (Danio rerio) and prediction of eight GCAPs (GCAP1-8) in pufferfish (Fugu rubripes). (PubMed id 15486694)7 Imanishi Y....Baehr W. (2004)
  6. GCAPs: Ca2+-sensitive regulators of retGC. (PubMed id 12596930)7 Gorczyca W.A. and Sokal I. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 9626 HGNC: 4680 AceView: GUCA1C Ensembl:ENSG00000138472 euGenes: HUgn9626
ECgene: GUCA1C Kegg: 9626 H-InvDB: GUCA1C

(According to HUGE)
About This Section
  --

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
  --

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from XenneX, Inc.)
About This Section
Patent Information for GUCA1C gene:
Search GeneIP for patents involving GUCA1C

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or Enzo Life Sciences)
About This Section

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