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HIPK4 Gene

protein-coding   GIFtS: 42

GC19M037320
homeodomain interacting protein kinase 4
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Products    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases & Descriptions
homeodomain interacting protein kinase 41 2
FLJ328181 2
homeodomain-interacting protein kinase 42
EC 2.7.11.13

External Ids:    HGNC: 190071   Entrez Gene: 1477462   Ensembl: ENSG000001603967   UniProtKB: Q8NE633   

Export aliases for HIPK4 gene to outside databases

Previous GC identifers: GC19M045577 GC19M040885


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: HIPK4_HUMAN, Q8NE63
Function: Protein kinase that phosphorylates human TP53 at Ser-9, and thus induces TP53 repression of BIRC5 promoter
(By similarity). May act as a corepressor of transcription factors (Potential)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the HIPK4 gene promoter:
         HNF-4alpha2   p53   SRF   IRF-7A   LUN-1   RP58   deltaCREB   CREB   Lmo2   Egr-1   
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for HIPK4

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.2   Ensembl cytogenetic band:  19q13.2   HGNC cytogenetic band: 19q13.2

HIPK4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
HIPK4 gene location

GeneLoc gene densities for chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M037320:  view genomic region     (about GC identifiers)

Start:
37,320,650 bp from pter
End:
37,331,675 bp from pter
Size:
11,026 bases
Orientation:
minus strand

1 alternative location:
Chr19- 40,885,179-40,896,094     
RefSeq DNA sequence:
NC_000019.9  NT_011109.16  

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
About This Section

UniProtKB/Swiss-Prot: HIPK4_HUMAN, Q8NE63 (See protein sequence)
Recommended Name: Homeodomain-interacting protein kinase 4  
Size: 616 amino acids; 69425 Da
Subcellular location: Cytoplasm (By similarity)
Secondary accessions: A8K863 Q96M54
Alternative splicing: 2 isoforms:  Q8NE63-1   Q8NE63-2   

Explore the universe of human proteins at neXtProt for HIPK4: NX_Q8NE63 

Post-translational modifications:

  • Autophosphorylated (By similarity)1
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_653286.2  

    ENSEMBL proteins: 
    ENSP00000291823 ENSP00000397736 


    Human Recombinant Proteins 
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    1 Gene Ontology (GO) cellular component term (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737 cytoplasm IEA--
    About this table

    HIPK4 for ontologies           About GeneDecksing



    Antibodies for HIPK4: 
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    Uscn ELISAs and CLIAs for HIPK4 


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    HIPK4 for domains           About GeneDecksing

    5/6 InterPro domains/families (see all 6):
     IPR017441 Protein_kinase_ATP_BS
     IPR002290 Ser/Thr_prot_kinase_dom
     IPR011009 Kinase-like_dom
     IPR008271 Ser/Thr_prot_kinase_AS
     IPR000719 Prot_kinase_cat_dom

    Graphical View of Domain Structure for InterPro Entry Q8NE63

    ProtoNet protein and cluster: Q8NE63

    UniProtKB/Swiss-Prot: HIPK4_HUMAN, Q8NE63
    Similarity: Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. HIPK subfamily
    Similarity: Contains 1 protein kinase domain


    (According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
    About This Section

    UniProtKB/Swiss-Prot: HIPK4_HUMAN, Q8NE63
    Function: Protein kinase that phosphorylates human TP53 at Ser-9, and thus induces TP53 repression of BIRC5 promoter
    (By similarity). May act as a corepressor of transcription factors (Potential)
    Catalytic activity: ATP + a protein = ADP + a phosphoprotein
    Enzyme Number (IUBMB): EC 2.7.11.1 

    Inhib.
    RNA:
        
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    Search SABiosciences for Assays for microRNAs that regulate HIPK4

    Gene
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    Clones:Browse Clones for the Expression of Recombinant Proteins Available from Millipore
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    OriGene GFP tagged cDNA clones in CMV expression vector: HIPK4
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector: HIPK4
    OriGene untagged cDNA clones in CMV expression vector (see all 2): HIPK4
    OriGene 3'-UTR clone: HIPK4 
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    Cell
    Lines:
      
    GenScript Custom overexpressing Cell Line Services for HIPK4 

    5 Gene Ontology (GO) molecular function terms (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166 nucleotide binding IEA--
    GO:0004672 protein kinase activity ----
    GO:0004674 protein serine/threonine kinase activity IEA--
    GO:0005524 ATP binding IEA--
    GO:0016740 transferase activity IEA--
    About this table

    HIPK4 for ontologies           About GeneDecksing


    (Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
    About This Section

        SABiosciences Custom Pathway-Focused PCR Arrays for HIPK4 

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for HIPK4

    1 Gene Ontology (GO) biological process term (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006468 protein phosphorylation IEA--
    About this table

    HIPK4 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section
    Browse Small Molecules at Sigma-Aldrich
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for HIPK4


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Millipore,
    siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
    Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
    About This Section

    Inhib.
    RNA:
         
    Browse for Gene Knock-down Tools from Millipore
    Sigma-Aldrich Nano Scale siRNA for HIPK4
    Sigma-Aldrich siRNA Panels and esiRNA and siRNA for HIPK4
    Sigma-Aldrich shRNA Panels and shRNA for HIPK4
    OriGene 29mer shRNA kits in GFP-retroviral vector (see all 2): HIPK4
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    miRNA: Sigma-Aldrich microRNA Mimics for HIPK4
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    Search SABiosciences for Assays for microRNAs that regulate HIPK4
    Clones: Browse FLAG tag genes at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector: HIPK4
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector: HIPK4
    OriGene untagged cDNA clones in CMV expression vector (see all 2): HIPK4
    OriGene 3'-UTR Clone: HIPK4 
    Browse OriGene MicroRNA Expression Plasmids 
    GenScript cDNA clone with any tag delivered in your preferred vector: HIPK4 
    Primers: OriGene genome-wide validated SYBR primer pairs: HIPK4
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for HIPK4: PPH14461A

    REFSEQ mRNAs for HIPK4 gene: 

    NM_144685.3  

    Additional cDNA sequence: 

    AK057380.1 AK292228.1 AK301713.1 AK302301.1 BC034501.2 

    3 DOTS entries:

    DT.100016640  DT.100667090  DT.435710 

    18 AceView cDNA sequences:

    NM_144685 BC034501 AK057380 CD637132 BG772881 BM554291 AI001807 CD637133 
    BX099852 BU678003 CD637134 CD637135 AI806773 BI827147 BG771831 BI561789 
    BG720082 BF950933 

    highest scoring ESTs for HIPK4:

    AI806773 BC034501 BG720082 BG771831 BG772881 BI561789 BI827147 AI001807 AK057380 BG105231 

    Unigene Cluster for HIPK4:

    Homeodomain interacting protein kinase 4
    Hs.79363  [show with all ESTs]
    Unigene Representative Sequence: NM_144685


    GeneLoc Exon Structure

    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000291823(uc002onp.2) ENST00000452139

    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Primers from OriGene and/or SABiosciences )
    About This Section

    HIPK4 expression in normal and diseased human tissues

    1  / 2  / 3

    2 probe-sets matching HIPK4 gene

    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    70928_at2, 3 U95-E 1 0.81 1.00 1.00 1.00 AI806773 0.80 1.00 0.91 1
    1553238_a_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    About this table

    HIPK4 for expression           About GeneDecksing

    Data from Genenote  (Publications) and GNF BioGPS
        About these images
    HIPK4 gene expression
    HIPK4 gene electronic northern expression
    HIPK4 gene sage expression
    About these images

    CGAP SAGE TAG: TCACCGGGCA

    SOURCE GeneReport for Unigene cluster: Hs.79363
    Primers: OriGene genome-wide validated SYBR primer pairs: HIPK4
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for HIPK4: PPH14461A
        SABiosciences Custom PCR Arrays for HIPK4 


    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section

    Orthologs for HIPK4 gene from 5/6 species (see all 6)
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    HIPK41   -- homeodomain interacting protein kinase 4 88.65(n)
    89.74(a)
    476458  XM_533668.2  XP_533668.2 
    chimpanzee
    (Pan troglodytes)
    HIPK41   -- homeodomain interacting protein kinase 4 98.32(n)
    98.21(a)
    468883  XM_524269.2  XP_524269.1 
    cow
    (Bos taurus)
    HIPK41   -- homeodomain interacting protein kinase 4 87.91(n)
    88.13(a)
    520157  XM_598392.3  XP_598392.3 
    rat
    (Rattus norvegicus)
    Hipk41   -- homeodomain interacting protein kinase 4 83.25(n)
    86.67(a)
    308449  NM_001024776.1  NP_001019947.1 
    mouse
    (Mus musculus)
    Hipk45 7 (15.92 cM) homeodomain interacting protein kinase 4   -- CR521665 
    About this table        Species with no ortholog for HIPK4

    ENSEMBL Gene Tree for HIPK4 (if available)

    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section
    Paralogs for HIPK4 gene
    DYRK1A2  HIPK12  HIPK32  HIPK22  DYRK1B2  

    HIPK4 for paralogs           About GeneDecksing



    (SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
    About This Section
    QIAGEN SeqTarget long-range PCR primers for resequencing HIPK4 

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    HIPK4 for disorders           About GeneDecksing

    OMIM: 611712


    Export disorders and mutations for HIPK4 gene to outside databases

    (Possibly Related Articles in Doctor's Guide)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
    About This Section

    5 PubMed articles for HIPK4 gene integrated from 7 sources:
    (articles sorted by number of sources associating them with HIPK4)
    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. Novel homeodomain-interacting protein kinase family member, HIPK4, phosphorylates human p53 at serine 9. (PubMed id 18022393)1 Arai S.... Kurokawa R. (2007)
    4. Patterns of somatic mutation in human cancer genomes. (PubMed id 17344846)2 Greenman C.... Stratton M.R. (2007)
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 147746 HGNC: 19007 AceView: HIPK4 Ensembl:ENSG00000160396 euGenes: HUgn147746
    ECgene: HIPK4 H-InvDB: HIPK4

    (According to HUGE)
    About This Section
      --

    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
      --

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from XenneX, Inc.)
    About This Section
    Patent Information for HIPK4 gene:
    Search GeneIP for patents involving HIPK4

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
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    About This Section

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