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Aliases & Descriptionsfor HIST1H2AB gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions histone cluster 1, H2ab1 2 Histone H2A/a2 3 H2AFM2 3 5 Histone H2A.22 3 H2A/m1 2 HIST1H2AE2 H2A histone family, member M1 2 histone H2A type 1-B/E2 histone 1, H2ab1 2 H2AFA3 Histone H2A/m2 3
Export aliases for HIST1H2AB gene to outside databases Previous GC identifers: GC06M026090 GC06M026141
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Summariesfor HIST1H2AB gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for HIST1H2AB : Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. This structure consists of approximately 146 bp of DNA wrapped around a nucleosome, an octamer composed of pairs of each of the four core histones (H2A, H2B, H3, and H4). The chromatin fiber is further compacted through the interaction of a linker histone, H1, with the DNA between the nucleosomes to form higher order chromatin structures. This gene is intronless and encodes a member of the histone H2A family. Transcripts from this gene lack polyA tails; instead, they contain a palindromic termination element. This gene is found in the large histone gene cluster on chromosome 6p22-p21.3. (provided by RefSeq) UniProtKB/Swiss-Prot: H2A1B_HUMAN, P04908 Function : Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility tothe cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling Gene Wiki entry for HIST1H2AB
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Genomic Viewsfor HIST1H2AB gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the HIST1H2AB gene promoter: oct-B3 Oct-B1 POU2F2C POU2F2B POU2F2 (Oct-2.1) POU2F2 POU2F1 oct-B2 NRSF form 2 NRSF form 1 Other transcription factors Search SABiosciences Chromatin IP Primers for HIST1H2AB Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 6p21.3 Ensembl cytogenetic band: 6p22.2 HGNC cytogenetic band: 6p22.1 HIST1H2AB Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure
GeneLoc location for GC06M025976: view genomic region
(about GC identifiers )
Start:
25,976,385 bp from pter
End:
25,976,861 bp from pter
Size:
477 bases
Orientation:
minus strand
1 alternative location : Chr 6- 26,033,320-26,033,796
RefSeq DNA sequence: NC_000006.11 NT_007592.15
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Proteinsfor HIST1H2AB gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: H2A1B_HUMAN, P04908 (See
protein sequence )Recommended Name: Histone H2A type 1-B/E Size : 130 amino acids; 14135 Da
Subunit : The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in oneH3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA
Subcellular location : Nucleus. Chromosome
Mass spectrometry : Mass=14037.9; Method=Electrospray; Range=2-130; Note=Monoisotopic with N-acetylserine;Source=PubMed:16457589;
PDB structures from and Proteopedia : 2CV5 (3D)
 3A6N (3D)
 3AFA (3D)
 
Secondary accessions : P28001 Q76P63Explore the universe of human proteins at neXtProt for HIST1H2AB: NX_P04908 Post-translational modifications:
The chromatin-associated form is phosphorylated on Thr-121 during mitosis (Probable)1
Deiminated on Arg-4 in granulocytes upon calcium entry1
Monoubiquitination of Lys-120 by RING1 and RNF2/RING2 complex gives a specific tag for epigenetic transcriptional repression and participates in X chromosome inactivation of female mammals. It is involved in the initiation of both imprinted and random X inactivation. Ubiquitinated H2A is enriched in inactive X chromosome chromatin. Ubiquitination of H2A functions downstream of methylation of 'Lys-27' of histone H3. Monoubiquitination of Lys-120 by RNF2/RING2 can also be induced by ultraviolet and may be involved in DNA repair. Following DNA double-strand breaks (DSBs), it is ubiquitinated through 'Lys-63' linkage of ubiquitin moieties by the E2 ligase UBE2N and the E3 ligases RNF8 and RNF168, leading to the recruitment of repair proteins to sites of DNA damage. Monoubiquitination and ionizing radiation-induced 'Lys-63'-linked ubiquitination are distinct events1
Phosphorylation on Ser-2 is enhanced during mitosis. Phosphorylation on Ser-2 by RPS6KA5/MSK1 directly represses transcription. Acetylation of H3 inhibits Ser-2 phosphorylation by RPS6KA5/MSK11
Symmetric dimethylation on Arg-4 by the PRDM1/PRMT5 complex may play a crucial role in the germ-cell lineage (By similarity)1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_003504.2 ENSEMBL proteins: ENSP00000259791 Human Recombinant Proteins 3 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
HIST1H2AB for ontologies About GeneDecksing Antibodies for HIST1H2AB: Assays for HIST1H2AB:
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Protein
Domains/ Familiesfor HIST1H2AB gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
HIST1H2AB for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P04908 ProtoNet protein and cluster: P04908
1 Blocks protein family : IPB002119 Histone H2A UniProtKB/Swiss-Prot: H2A1B_HUMAN, P04908 Similarity : Belongs to the histone H2A family
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Gene Functionfor HIST1H2AB gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: H2A1B_HUMAN, P04908 Function : Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility tothe cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling
1 Gene Ontology (GO) molecular function term (GO ID links to tree view) :
About this table
HIST1H2AB for ontologies About GeneDecksing
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Pathways & Interactionsfor HIST1H2AB gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
HIST1H2AB for pathways About GeneDecksing 1 Kegg Pathway (Kegg details for HIST1H2AB) : SABiosciences Custom Pathway-Focused PCR Arrays for HIST1H2AB Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for HIST1H2AB 5/77 Interacting proteins for HIST1H2AB (ENSP00000259791 3 P04908 2 ) via UniProtKB, MINT, and/or STRING (see all 77 )About this table 1 Gene Ontology (GO) biological process term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006334 nucleosome assembly
NAS --
About this table
HIST1H2AB for ontologies About GeneDecksing
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Drugs & Compoundsfor HIST1H2AB gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for HIST1H2AB
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Transcriptsfor HIST1H2AB gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for HIST1H2AB gene: NM_003513.2
Additional cDNA sequence: AK311785.1 BC125140.1
1 DOTS entry : DT.91859377
9 AceView cDNA sequences :
NM_003513 CK130258 CK130259 CF272106 CK130257 CK130255 CK130278 CK130256 CK130253
highest scoring ESTs for HIST1H2AB :CF272106 CK130253 CK130255 CK130256 CK130257 CK130258 CK130259 CK130261 CK130278 CF272107 Unigene Cluster for HIST1H2AB:
Histone cluster 1, H2ab Hs.248174 [show with all ESTs ] Unigene Representative Sequence: CK130254 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000259791 (uc003nft.1 )
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Expression for HIST1H2AB gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section HIST1H2AB expression in normal and diseased human tissues 1 / 2 / 3
2 probe-sets matching HIST1H2AB gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
208569_at2 , 3
U133-A
2
0.73
0.94
--
--
NM_003513
0.60
1.00
0.82
1
208569_at2
U133Plus2
2
0.73
0.94
--
--
--
--
--
--
--
About this table Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CACTGCTGTT SOURCE GeneReport for Unigene cluster: Hs.248174 SABiosciences Custom PCR Arrays for HIST1H2AB
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Orthologsfor HIST1H2AB gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for HIST1H2AB gene from 5 species
About this table Species with no ortholog for HIST1H2AB ENSEMBL Gene Tree for HIST1H2AB (if available)
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Paralogsfor HIST1H2AB gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for HIST1H2AB gene HIST1H2AE 1 2 HIST3H2A 2 HIST2H2AA4 2 HIST1H2AA 2 HIST1H2AD 2 HIST2H2AC 2 HIST2H2AA3 2 HIST1H2AC 2 H2AFJ 2
HIST1H2AB for paralogs About GeneDecksing Pseudogenes 1 related pseudogene
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Genomic Variantsfor HIST1H2AB gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 6 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for HIST1H2AB (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for HIST1H2AB: --
QIAGEN SeqTarget long-range PCR primers for resequencing HIST1H2AB
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Disorders & Mutationsfor HIST1H2AB gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
HIST1H2AB for disorders About GeneDecksing
OMIM: 602795 Human Genome Epidemiology (HuGE) Navigator: HIST1H2AB (1 document)Export disorders and mutations for HIST1H2AB gene to outside databases
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Medical Newsfor HIST1H2AB gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor HIST1H2AB gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/30 PubMed articles for HIST1H2AB gene, integrated from 7 sources (see all 30 ): (articles sorted by number of sources associating them with HIST1H2AB) The human and mouse replication-dependent histone genes. (PubMed id 12408966) 1 , 2 , 3 Marzluff W.F....Maltais L.J. (2002) The human histone gene cluster at the D6S105 locus. (PubMed id 9439656) 1 , 2 , 3 Albig W. and Doenecke D. (1997) DNA damage triggers nucleotide excision repair-dependent monoubiquitylation of histone H2A. (PubMed id 16702407) 1 , 2 Bergink S.... Dantuma N.P. (2006) Deimination of histone H2A and H4 at arginine 3 in HL-60 granulocytes. (PubMed id 15823041) 1 , 2 Hagiwara T.... Yamada M. (2005) Role of Bmi-1 and Ring1A in H2A ubiquitylation and Hox gene silencing. (PubMed id 16359901) 1 , 2 Cao R.... Zhang Y. (2005) Role of histone H2A ubiquitination in Polycomb silencing. (PubMed id 15386022) 1 , 2 Wang H.... Zhang Y. (2004) Phosphorylation of histone H2A inhibits transcription on chromatin templates. (PubMed id 15010469) 1 , 2 Zhang Y.... Parvin J.D. (2004) Nucleosomal histone kinase-1 phosphorylates H2A Thr 119 during mitosis in the early Drosophila embryo. (PubMed id 15078818) 1 , 2 Aihara H.... Ito T. (2004) Human histone gene organization: nonregular arrangement within a large cluster. (PubMed id 9119399) 1 , 3 Albig W.... Doenecke D. (1997) The primary structure and expression of four cloned human histone genes. (PubMed id 6647026) 1 , 2 Zhong R.... Heintz N. (1983)
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External Searches for HIST1H2AB gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing HIST1H2AB gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing HIST1H2AB gene
(According to HUGE )
About This Section --
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Specialized Databases showing HIST1H2AB gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for HIST1H2AB gene: Search GeneIP for patents involving HIST1H2AB GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor HIST1H2AB gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
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