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Aliases & Descriptionsfor HIST1H4K gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions histone cluster 1, H4k1 2 H4FA3 H4FD2 3 5 H4FH3 dJ160A22.11 2 H4F23 H4/d1 2 H4/A3 H4 histone family, member D1 2 H4FM3 histone 1, H4k1 2 H4FK3 H4F2iii1 2 H4FG3 HIST1H4F2 H4FB3 HIST1H4L2 HIST2H43 histone H42 H4/K3 HIST1H4H2 H4/N3 HIST2H4B2 H4FE3 HIST1H4I2 H4/M3 HIST1H4B2 H4FC3 HIST1H4A2 H4FI3 HIST1H4E2 H4/H3 HIST2H4A2 H4/G3 HIST4H42 H4FJ3 HIST1H4C2 H4/I3 HIST1H4J2 H4FO3 HIST1H4D2 H4/B3 H4/J3 H4/D3 H4/O3 H4/C3 H4FN3 H4/E3
Export aliases for HIST1H4K gene to outside databases Previous GC identifers: GC06M027856 GC06M027906 GC06M027798
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Summariesfor HIST1H4K gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for HIST1H4K : Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a member of the histone H4 family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. This gene is found in the small histone gene cluster on chromosome 6p22-p21.3. (provided by RefSeq) UniProtKB/Swiss-Prot: H4_HUMAN, P62805 Function : Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility tothe cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling Gene Wiki entry for HIST1H4K
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Genomic Viewsfor HIST1H4K gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the HIST1H4K gene promoter: AhR Arnt MEF-2A Pax-6 FOXO4 GATA-2 MZF-1 STAT5A E2F-2 E2F-5 Other transcription factors Search SABiosciences Chromatin IP Primers for HIST1H4K Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for HIST1H4K
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 6p22.1 Ensembl cytogenetic band: 6p22.1 HGNC cytogenetic band: 6p22.1 HIST1H4K Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure
GeneLoc location for GC06M027606: view genomic region
(about GC identifiers )
Start:
27,606,606 bp from pter
End:
27,606,959 bp from pter
Size:
354 bases
Orientation:
minus strand
1 alternative location : Chr 6- 27,798,994-27,799,305
RefSeq DNA sequence: NC_000006.11 NT_007592.15
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Proteinsfor HIST1H4K gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: H4_HUMAN, P62805 (See
protein sequence )Recommended Name: Histone H4 Size : 103 amino acids; 11367 Da
Subunit : The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in oneH3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA
Subcellular location : Nucleus. Chromosome
Sequence caution : Sequence=AAI28106.1; Type=Frameshift; Positions=3;
PDB structures from and Proteopedia : 2BQZ (3D)
 2CV5 (3D)
 2RNY (3D)
 3A6N (3D)
 3AFA (3D)
 3CFS (3D)
 3CFV (3D)
 3F9W (3D)
 3F9X (3D)
 3F9Y (3D)
 3F9Z (3D)
 3NQJ (3D)
 3NQU (3D)
 
Secondary accessions : A2VCL0 P02304 P02305 Q6DRA9 Q6FGB8 Q6NWP7Explore the universe of human proteins at neXtProt for HIST1H4K: NX_P62805 Post-translational modifications:
Acetylation at Lys-6 (H4K5ac), Lys-9 (H4K8ac), Lys-13 (H4K12ac) and Lys-17 (H4K16ac) occurs in coding regions of the genome but not in heterochromatin1
Citrullination at Arg-4 (H4R3ci) by PADI4 impairs methylation1
Monomethylation at Arg-4 (H4R3me1) by PRMT1 favors acetylation at Lys-9 (H4K8ac) and Lys-13 (H4K12ac). Demethylation is performed by JMJD61
Symmetric dimethylation on Arg-4 (H4R3me2a) by the PRDM1/PRMT5 complex may play a crucial role in the germ-cell lineage1
Monomethylated, dimethylated or trimethylated at Lys-21 (H4K20me1, H4K20me2, H4K20me3). Monomethylation is performed by SET8. Trimethylation is performed by SUV420H1 and SUV420H2 and induces gene silencing1
Ubiquitinated by the CUL4-DDB-RBX1 complex in response to ultraviolet irradiation. This may weaken the interaction between histones and DNA and facilitate DNA accessibility to repair proteins. Monoubiquitinated at Lys-92 of histone H4 (H4K91ub1) in response to DNA damage. The exact role of H4K91ub1 in DNA damage response is still unclear but it may function as a licensing signal for additional histone H4 post-translational modifications such as H4 Lys-21 methylation (H4K20me)1
Sumoylated, which is associated with transcriptional repression1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_003532.1 ENSEMBL proteins: ENSP00000350159 Human Recombinant Proteins 4 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
HIST1H4K for ontologies About GeneDecksing Antibodies for HIST1H4K: Assays for HIST1H4K:
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Protein
Domains/ Familiesfor HIST1H4K gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
HIST1H4K for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P62805 ProtoNet protein and cluster: P62805
UniProtKB/Swiss-Prot: H4_HUMAN, P62805 Similarity : Belongs to the histone H4 family
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Gene Functionfor HIST1H4K gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: H4_HUMAN, P62805 Function : Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility tothe cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling
3 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0003677 DNA binding
-- -- GO:0005515 protein binding
-- -- GO:0016986 transcription initiation factor activity
-- --
About this table
HIST1H4K for ontologies About GeneDecksing
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Pathways & Interactionsfor HIST1H4K gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
HIST1H4K for pathways About GeneDecksing 5 Millipore Pathways for HIST1H4K 1 Kegg Pathway (Kegg details for HIST1H4K) : SABiosciences Custom Pathway-Focused PCR Arrays for HIST1H4K Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for HIST1H4K 5/138 Interacting proteins for HIST1H4K (P62805 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 138 )About this table 5 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006325 chromatin organization
-- -- GO:0006334 nucleosome assembly
-- -- GO:0006352 transcription initiation
-- -- GO:0045653 negative regulation of megakaryocyte differentiation
-- -- GO:0048015 phosphoinositide-mediated signaling
-- --
About this table
HIST1H4K for ontologies About GeneDecksing
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Drugs & Compoundsfor HIST1H4K gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for HIST1H4K
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Transcriptsfor HIST1H4K gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for HIST1H4K gene: NM_003541.2
Additional cDNA sequence: BC111093.1 BC111434.1
3 DOTS entries : DT.99935921 DT.121375393 DT.101973526
16 AceView cDNA sequences :
NM_021968 AW451698 BC062345 AF086564 BC017361 BU849117 AI653010 BU533398 NM_003541 BE669804 AA702915 AI420192 CD175217 CD175201 AA010078 BE973853
highest scoring ESTs for HIST1H4K :T98257 BC111093 BC111434 DA286485 DA436104 DA438592 DA439641 DA453996 DA946389 CK032871 Unigene Cluster for HIST1H4K:
Histone cluster 1, H4k Hs.528055 [show with all ESTs ] Unigene Representative Sequence: DA438592 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000357549 (uc003njr.2 )
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Expression for HIST1H4K gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section HIST1H4K expression in normal and diseased human tissues 1 / 3 Data from
Genenote  
(Publications) and GNF BioGPS About these images
About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.528055 SABiosciences Custom PCR Arrays for HIST1H4K
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Orthologsfor HIST1H4K gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for HIST1H4K gene from 5/20 species (see all 20 )
About this table Species with no ortholog for HIST1H4K ENSEMBL Gene Tree for HIST1H4K (if available)
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Paralogsfor HIST1H4K gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for HIST1H4K gene HIST1H4J HIST1H4I 1 2 HIST1H4A HIST1H4L 1 2 HIST2H4A HIST1H4E HIST2H4B HIST1H4B HIST1H4F HIST1H4D HIST1H4H 1 2 HIST4H4 HIST1H4C HIST1H4G 2
HIST1H4K for paralogs About GeneDecksing
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Genomic Variantsfor HIST1H4K gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 6 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for HIST1H4K (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for HIST1H4K: --
QIAGEN SeqTarget long-range PCR primers for resequencing HIST1H4K
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Disorders & Mutationsfor HIST1H4K gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
HIST1H4K for disorders About GeneDecksing
OMIM: 602825 Export disorders and mutations for HIST1H4K gene to outside databases
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Medical Newsfor HIST1H4K gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor HIST1H4K gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/40 PubMed articles for HIST1H4K gene, integrated from 7 sources (see all 40 ): (articles sorted by number of sources associating them with HIST1H4K) The human and mouse replication-dependent histone genes. (PubMed id 12408966) 1 , 2 , 3 Marzluff W.F....Maltais L.J. (2002) The human histone gene cluster at the D6S105 locus. (PubMed id 9439656) 1 , 2 , 3 Albig W. and Doenecke D. (1997) Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332) 2 Mayya V.... Han D.K. (2009) BBAP monoubiquitylates histone H4 at lysine 91 and selectively modulates the DNA damage response. (PubMed id 19818714) 2 Yan Q....Shipp M.A. (2009) Lysine acetylation targets protein complexes and co-regulates major cellular functions. (PubMed id 19608861) 2 Choudhary C.... Mann M. (2009) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 2 Dephoure N.... Gygi S.P. (2008) Evaluation of the low-specificity protease elastase for large-scale phosphoproteome analysis. (PubMed id 19007248) 2 Wang B.... Korner R. (2008) Certain and progressive methylation of histone H4 at lysine 20 during the cell cycle. (PubMed id 17967882) 2 Pesavento J.J.... Mizzen C.A. (2008) Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer. (PubMed id 18083107) 2 Rikova K....Comb M.J. (2007) Characterization of histones H2A and H2B variants and their post- translational modifications by mass spectrometry. (PubMed id 16319397) 2 Bonenfant D.... van Oostrum J. (2006)
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External Searches for HIST1H4K gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing HIST1H4K gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
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Other Databases showing HIST1H4K gene
(According to HUGE )
About This Section --
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Specialized Databases showing HIST1H4K gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for HIST1H4K gene: Search GeneIP for patents involving HIST1H4K GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor HIST1H4K gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
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Aliases for HIST1H4K
Databases for HIST1H4K
Disorders for HIST1H4K
Domains/Families for HIST1H4K
Drugs/Compounds for HIST1H4K
Expression for HIST1H4K
Function for HIST1H4K
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Intellectual Property for HIST1H4K
Medical News for HIST1H4K
Orthologs for HIST1H4K
Paralogs for HIST1H4K
Pathways/Interactions for HIST1H4K
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Proteins for HIST1H4K
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Search Box for HIST1H4K
Summaries for HIST1H4K
Transcripts for HIST1H4K
Variants for HIST1H4K
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