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Aliases & Descriptionsfor HOXA13 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions homeobox A131 2 transcription factor HOXA132 HOX1J2 3 5 HOX12 homeo box A131 2 homeo box 1J2 Homeobox protein Hox-1J2 3 homeobox protein Hox-A132 homeobox protein HOXA132
Export aliases for HOXA13 gene to outside databases Previous GC identifers: GC07M026880 GC07M026944 GC07M026978 GC07M027009 GC07M027235
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Summariesfor HOXA13 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for HOXA13 : In vertebrates, the genes encoding the class of transcription factors called homeobox genes are found in clusters named A, B, C, and D on four separate chromosomes. Expression of these proteins is spatially and temporally regulated during embryonic development. This gene is part of the A cluster on chromosome 7 and encodes a DNA-binding transcription factor which may regulate gene expression, morphogenesis, and differentiation. Expansion of a polyalanine tract in the encoded protein can cause hand-foot-uterus syndrome, also known as hand-foot-genital syndrome. (provided by RefSeq) UniProtKB/Swiss-Prot: HXA13_HUMAN, P31271 Function : Sequence-specific transcription factor which is part of a developmental regulatory system that provides cellswith specific positional identities on the anterior-posterior axis Gene Wiki entry for HOXA13
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Genomic Viewsfor HOXA13 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the HOXA13 gene promoter: AP-1 c-Fos c-Jun MyoD Sp1 YY1 Meis-1 HOXA9B ATF ATF-2 Other transcription factors Search SABiosciences Chromatin IP Primers for HOXA13 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for HOXA13
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 7p15.2 Ensembl cytogenetic band: 7p15.2 HGNC cytogenetic band: 7p15.2 HOXA13 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07M027203: view genomic region
(about GC identifiers )
Start:
27,117,064 bp from pter
End:
27,152,477 bp from pter
Size:
35,414 bases
Orientation:
minus strand
1 alternative location : Chr 7- 27,233,122-27,239,725
RefSeq DNA sequence: NC_000007.13 NT_007819.17 NT_079592.2
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Proteinsfor HOXA13 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: HXA13_HUMAN, P31271 (See
protein sequence )Recommended Name: Homeobox protein Hox-A13 Size : 388 amino acids; 39727 Da
Subcellular location : Nucleus
Secondary accessions : A4D188 O43371Explore the universe of human proteins at neXtProt for HOXA13: NX_P31271
REFSEQ proteins: NP_000513.2 ENSEMBL proteins: ENSP00000222753 Human Recombinant Proteins 1 Gene Ontology (GO) cellular component term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
IEA --
About this table
HOXA13 for ontologies About GeneDecksing Antibodies for HOXA13: Assays for HOXA13:
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Protein
Domains/ Familiesfor HOXA13 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
HOXA13 for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P31271 ProtoNet protein and cluster: P31271
UniProtKB/Swiss-Prot: HXA13_HUMAN, P31271 Similarity : Belongs to the Abd-B homeobox familySimilarity : Contains 1 homeobox DNA-binding domain
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Gene Functionfor HOXA13 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: HXA13_HUMAN, P31271 Function : Sequence-specific transcription factor which is part of a developmental regulatory system that provides cellswith specific positional identities on the anterior-posterior axis
Genatlas biochemistry entry for HOXA13 :homeo box A13(1J),homologous to mouse Hox-1.10 (hypodactyly),expressed in the developing lower genitourinary tract (abnormal seminal vesicle and prostate development),altered in hypodactyly mutants 5/6 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 6 ):
About this table
HOXA13 for ontologies About GeneDecksing Animal Models: 13 MGI mutant phenotypes (inferred from 6 alleles ) (MGI details for Hoxa13) :
HOXA13 for phenotypes About GeneDecksing
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Pathways & Interactionsfor HOXA13 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for HOXA13 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for HOXA13 5/20 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 20 ):
About this table
HOXA13 for ontologies About GeneDecksing
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Drugs & Compoundsfor HOXA13 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
HOXA13 for compounds About GeneDecksing Browse Tocris compounds for HOXA13 1 Novoseek chemical compound relationship for HOXA13 gene
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
alanine
13.7
1
17935235 (1)
About this table
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Transcriptsfor HOXA13 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for HOXA13 gene: NM_000522.4
Additional cDNA sequence: BC016712.1 BC075791.1
1 DOTS entry : DT.443168
24/47 AceView cDNA sequences (see all 47 ):
R80259 BF589601 BF221789 BX119246 BQ024387 BE784076 BG260781 BQ025175 BU617759 NM_000522 AI080175 AI695522 AI659273 BQ022750 BF055200 AW364757 BG259921 AI800530 AI680626 AA088393 CB129050 AA088276 BX439546 AI680621
highest scoring ESTs for HOXA13 :AA160421 AI680626 AI680621 AI800530 AL597666 BC016712 BC075791 BE784076 BF793608 BG289306 Unigene Cluster for HOXA13:
Homeobox A13 Hs.592172 [show with all ESTs ] Unigene Representative Sequence: NM_000522 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000518136 ENST00000222753 (uc003szb.1 )
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Expression for HOXA13 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section HOXA13 expression in normal and diseased human tissues 1 / 2 / 3
4 probe-sets matching HOXA13 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
47826_at2 , 3
U95-B
2
0.44
0.78
0.94
0.82
AA687604
0.40
1.00
0.76
1
60937_at2 , 3
U95-C
1
0.38
1.00
0.90
1.34
AI680626
0.80
1.00
0.91
1
231786_at2 , 3
U133-B
1
0.27
1.00
--
--
BG289306
0.60
1.00
0.82
1
231786_at2
U133Plus2
1
0.27
1.00
--
--
--
--
--
--
--
About this table
HOXA13 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTTATTGTGT SOURCE GeneReport for Unigene cluster: Hs.592172 SABiosciences Custom PCR Arrays for HOXA13
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Orthologsfor HOXA13 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for HOXA13 gene from 5/6 species (see all 6 )
About this table Species with no ortholog for HOXA13 ENSEMBL Gene Tree for HOXA13 (if available)
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Paralogsfor HOXA13 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for HOXA13 gene HOXD13 2 HOXC13 2 HOXC12 2 HOXB13 2 HOXD12 2
HOXA13 for paralogs About GeneDecksing
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Genomic Variantsfor HOXA13 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 7 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for HOXA13 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for HOXA13: --
QIAGEN SeqTarget long-range PCR primers for resequencing HOXA13
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Disorders & Mutationsfor HOXA13 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
HOXA13 for disorders About GeneDecksing
OMIM: 142959 disorders : 140000 176305 UniProtKB/Swiss-Prot: HXA13_HUMAN, P31271
Defects in HOXA13 are the cause of hand-foot-genital syndrome (HFGS) [MIM:140000]; also known as hand-foot-uterus syndrome. The clinical features include small feet with unusually short great toes and abnormal thumbs. Females with the disorder have duplication of the genital tract Defects in HOXA13 are the cause of Guttmacher syndrome [MIM:176305]. Guttmacher syndrome is a dominantly inherited combination of distal limb and genital tract abnormalities. It has several features in common with hand-foot-genital syndrome, including hypoplastic first digits and hypospadias. Typical features not seen in hand-foot-genital syndrome include postaxial polydactyly of the hands and uniphalangeal second toes with absent nails
3 Novoseek disease relationships for HOXA13 gene
About this table GeneTests: HOXA13 Hand-Foot-Genital Syndrome Human Gene Mutation Database (HGMD) : HOXA13 Human Genome Epidemiology (HuGE) Navigator: HOXA13 (4 documents) Export disorders and mutations for HOXA13 gene to outside databases
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Medical Newsfor HOXA13 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor HOXA13 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/65 PubMed articles for HOXA13 gene, integrated from 7 sources (see all 65 ): (articles sorted by number of sources associating them with HOXA13) Novel HOXA13 mutations and the phenotypic spectrum of hand-foot- genital syndrome. (PubMed id 10839976) 1 , 2 , 7 Goodman F.R.... Scambler P.J. (2000) A HOXA13 allele with a missense mutation in the homeobox and a dinucleotide deletion in the promoter underlies Guttmacher syndrome. (PubMed id 11968094) 1 , 2 , 7 Innis J.W.... Guttmacher A.E. (2002) Mutation of HOXA13 in hand-foot-genital syndrome. (PubMed id 9020844) 1 , 2 , 7 Mortlock D.P. and Innis J.W. (1997) Human chromosome 7: DNA sequence and biology. (PubMed id 12690205) 1 , 2 Scherer S.W.... Tsui L.-C. (2003) The DNA sequence of human chromosome 7. (PubMed id 12853948) 1 , 2 Hillier L.W.... Wilson R.K. (2003) A novel stable polyalanine [poly(A)] expansion in the HOXA13 gene associated with hand-foot-genital syndrome: proper function of poly(A)-harbouring transcription factors depends on a critical repeat length? (PubMed id 12073020) 1 , 2 Utsch B....Ludwig M. (2002) Vertebrate homeobox gene nomenclature. (PubMed id 1358459) 1 , 3 Scott M.P. (1992) Nomenclature for human homeobox genes. (PubMed id 1973146) 1 , 3 McAlpine P.J. and Shows T.B. (1990) The human HOX gene family. (PubMed id 2574852) 1 , 2 Acampora D.... Boncinelli E. (1989) HOXA13 promotes cancer cell growth and predicts poor survival of patients with esophageal squamous cell carcinoma. (PubMed id 19491265) 1 , 7 Gu Z.D....Chen K.N. (2009)
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External Searches for HOXA13 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing HOXA13 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing HOXA13 gene
(According to HUGE )
About This Section --
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Specialized Databases showing HOXA13 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for HOXA13 gene: Search GeneIP for patents involving HOXA13 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor HOXA13 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for HOXA13
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