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Aliases & Descriptionsfor HSH2D gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions hematopoietic SH2 domain containing1 2 Hematopoietic SH2 protein2 3 ALX1 2 3 Adaptor in lymphocytes of unknown function X2 3 HSH21 2 hematopoietic SH2 domain-containing protein2 FLJ148861 2
Export aliases for HSH2D gene to outside databases Previous GC identifers: GC19P016106 GC19P016107 GC19P015938 GC19P016244
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Summariesfor HSH2D gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for HSH2D : T-cell activation requires 2 signals: recognition of antigen by the T-cell receptor (see TCR; MIM 186880) and a costimulatory signal provided primarily by CD28 (MIM 186760) in naive T cells. HSH2 is a target of both of these signaling pathways (Greene et al., 2003 (PubMed 12960172)).(supplied by OMIM) UniProtKB/Swiss-Prot: HSH2D_HUMAN, Q96JZ2 Function : May be a modulator of the apoptotic response through its ability to affect mitochondrial stability (Bysimilarity). Adapter protein involved in tyrosine kinase and CD28 signaling. Seems to affect CD28-mediated activation of the RE/AP element of the interleukin-2 promoter
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Genomic Viewsfor HSH2D gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the HSH2D gene promoter: NF-kappaB1 AP-1 c-Fos c-Jun NF-kappaB Sp1 GR-alpha ARP-1 TGIF MIF-1 Other transcription factors Search SABiosciences Chromatin IP Primers for HSH2D Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 19p13.12 Ensembl cytogenetic band: 19p13.12 HGNC cytogenetic band: 19p13.12 HSH2D Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19P015815: view genomic region
(about GC identifiers )
Start:
15,815,784 bp from pter
End:
15,840,224 bp from pter
Size:
24,441 bases
Orientation:
plus strand
1 alternative location : Chr 19+ 16,254,396-16,269,344
RefSeq DNA sequence: NC_000019.9 NT_011295.11
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Proteinsfor HSH2D gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: HSH2D_HUMAN, Q96JZ2 (See
protein sequence )Recommended Name: Hematopoietic SH2 domain-containing protein Size : 352 amino acids; 39002 Da
Subunit : Interacts with FES and TNK2
Subcellular location : Cytoplasm. Nucleus
PDB structures from and Proteopedia : 2CS0 (3D)
 
Secondary accessions : B5ME72 Q6ZNG7Alternative splicing : 2 isoforms : Q96JZ2-1 Q96JZ2-2 Explore the universe of human proteins at neXtProt for HSH2D: NX_Q96JZ2 Post-translational modifications:
May be phosphorylated by FES and ACK11
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_116244.1 ENSEMBL proteins: ENSP00000380528 ENSP00000253680 Human Recombinant Proteins 2 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
HSH2D for ontologies About GeneDecksing Antibodies for HSH2D: Assays for HSH2D:
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Protein
Domains/ Familiesfor HSH2D gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
HSH2D for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q96JZ2 ProtoNet protein and cluster: Q96JZ2
1 Blocks protein family : IPB000980 SH2 domain signature UniProtKB/Swiss-Prot: HSH2D_HUMAN, Q96JZ2 Similarity : Contains 1 SH2 domain
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Gene Functionfor HSH2D gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: HSH2D_HUMAN, Q96JZ2 Function : May be a modulator of the apoptotic response through its ability to affect mitochondrial stability (Bysimilarity). Adapter protein involved in tyrosine kinase and CD28 signaling. Seems to affect CD28-mediated activation of the RE/AP element of the interleukin-2 promoter
2 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005070 SH3/SH2 adaptor activity
IEA -- GO:0005515 protein binding
IEA --
About this table
HSH2D for ontologies About GeneDecksing Animal Models: 2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Hsh2d) :
HSH2D for phenotypes About GeneDecksing
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Pathways & Interactionsfor HSH2D gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for HSH2D SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for HSH2D 1 Gene Ontology (GO) biological process term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0042110 T cell activation
IEA --
About this table
HSH2D for ontologies About GeneDecksing
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Drugs & Compoundsfor HSH2D gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for HSH2D
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Transcriptsfor HSH2D gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for HSH2D gene: NM_032855.2
Additional cDNA sequence: AK027792.1 AK131222.1 AK298682.1 AK300027.1 AK307563.1 AY319652.1 BC016826.1 BC025237.2
9 DOTS entries : DT.206653 DT.40120606 DT.100756604 DT.75134736 DT.86852573 DT.121496134 DT.436661 DT.121496119
DT.75172695 24/536 AceView cDNA sequences (see all 536 ):
BC025237 CR542274 BM824094 CR594350 CR597154 BQ233493 BQ674769 BQ422922 BP365166 AI126505 BU543352 BP352452 BQ083814 BQ070820 BM762334 BM464622 AF498943 BM978303 BM475359 BX385694 BU168489 AK025165 BM923211 CA455095
highest scoring ESTs for HSH2D :T54146 AA280878 AA766987 AI940118 AK027792 AK131222 AV735509 AW958453 BC016826 BC025237 Unigene Cluster for HSH2D:
Hematopoietic SH2 domain containing Hs.631617 [show with all ESTs ] Unigene Representative Sequence: AK131222 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for HSH2D (see all 6 ) ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b ^ 6 ^ 7a · 7b SP1 :                           SP2 :         -     -   -   -           SP3 :         -     -   -             SP4 :         -     -   -   -           SP5 :         -                  
About this scheme ECgene alternative splicing isoforms for HSH2D 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000397372 (uc002ndr.2 ) ENST00000253680 (uc002ndp.3 uc010ead.2 )
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Expression for HSH2D gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section HSH2D expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching HSH2D gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
42286_at2 , 3
U95-B
1
0.94
1.00
0.98
0.74
AA280878
0.80
0.88
0.84
1
84981_r_at2 , 3
U95-E
1
0.88
1.00
0.98
1.26
T54146
1.00
0.90
0.95
1
1552623_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
About this table
HSH2D for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.631617 UniProtKB/Swiss-Prot: HSH2D_HUMAN, Q96JZ2 Tissue specificity : Predominantly expressed in spleen and hematopoietic cells such as peripheral blood leukocytes andweakly expressed in prostate, thymus, heart, small intestine and placenta
SABiosciences Custom PCR Arrays for HSH2D
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Orthologsfor HSH2D gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for HSH2D gene from 5 species
About this table Species with no ortholog for HSH2D ENSEMBL Gene Tree for HSH2D (if available)
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Paralogsfor HSH2D gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for HSH2D gene SH2D4A 2 SH2D2A 2 SH2D4B 2
HSH2D for paralogs About GeneDecksing
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Genomic Variantsfor HSH2D gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 19 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for HSH2D (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for HSH2D: --
QIAGEN SeqTarget long-range PCR primers for resequencing HSH2D
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Disorders & Mutationsfor HSH2D gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
HSH2D for disorders About GeneDecksing
OMIM: 608349 Human Genome Epidemiology (HuGE) Navigator: HSH2D (3 documents) Export disorders and mutations for HSH2D gene to outside databases
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Medical Newsfor HSH2D gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor HSH2D gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/13 PubMed articles for HSH2D gene, integrated from 7 sources (see all 13 ): (articles sorted by number of sources associating them with HSH2D) HSH2: a novel SH2 domain-containing adapter protein involved in tyrosine kinase signaling in hematopoietic cells. (PubMed id 11700021) 1 , 2 , 3, 7 Oda T.... Yamashita T. (2001) Cloning and characterization of ALX, an adaptor downstream of CD28. (PubMed id 12960172) 1 , 2 , 7 Greene T.A.... Shapiro V.S. (2003) The ALX Src homology 2 domain is both necessary and sufficient to inhibit T cell receptor/CD28-mediated up-regulation of RE/AP. (PubMed id 15284240) 1 , 2 , 7 Shapiro M.J.... Shapiro V.S. (2004) The carboxyl-terminal segment of the adaptor protein ALX directs its nuclear export during T cell activation. (PubMed id 16169852) 1 , 2 Shapiro M.J.... Shapiro V.S. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) New genetic associations detected in a host response study to hepatitis B vaccine. (PubMed id 20237496) 1 Davila S....Seielstad M. (2010) Resolvin D1 binds human phagocytes with evidence for proresolving receptors. (PubMed id 20080636) 1 Krishnamoorthy S....Serhan C.N. (2010) Phosphorylation at serine 318 is not required for inh ibition of T cell activation by ALX. (PubMed id 20471366) 1 Shapiro M.J....Shapiro V.S. (2010) Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086) 1 Bailey S.D....Anand S. (2010)
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External Searches for HSH2D gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing HSH2D gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing HSH2D gene
(According to HUGE )
About This Section --
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Specialized Databases showing HSH2D gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for HSH2D gene: Search GeneIP for patents involving HSH2D GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor HSH2D gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for HSH2D
ELISAs and CLIAs for HSH2D
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