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IGHV1OR15-9 Gene

pseudogene   GIFtS: 19

GC15M020170
immunoglobulin heavy variable 1/OR15-9 (non-functional)
(Previous name: immunoglobulin heavy variable 1/OR15-9 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases &
Descriptions
for IGHV1OR15-9 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section
Aliases & Descriptions
immunoglobulin heavy variable 1/OR15-9 (non-functional)1 2
IGHV1OR1591 2
IGHV1/OR15-91
immunoglobulin heavy variable 1/OR15-91

External Ids:    HGNC: 55691   Entrez Gene: 6519632   Ensembl: ENSG000001884037   UniProtKB: A6NDP13   

Export aliases for IGHV1OR15-9 gene to outside databases

Previous GC identifers: GC15U990086 GC15M018431


Summaries
for IGHV1OR15-9 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
  --

Genomic Views
for IGHV1OR15-9 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for IGHV1OR15-9
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for IGHV1OR15-9

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 15q11.1   Ensembl cytogenetic band:  15q11.1   HGNC cytogenetic band: 15q11.2

IGHV1OR15-9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
IGHV1OR15-9 gene location

GeneLoc gene densities for chromosome 15         GeneLoc Exon Structure

GeneLoc location for GC15M020170:  view genomic region     (about GC identifiers)

Start:
 20,169,909 bp from pter
End:
 20,170,354 bp from pter
Size:
 446 bases
Orientation:
 minus strand

1 alternative location:
Chr15- 186,617-187,062     

Proteins
for IGHV1OR15-9 gene

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
About This Section
UniProtKB/Swiss-Prot: VSIG7_HUMAN, A6NDP1 (See protein sequence)
Recommended Name: Putative V-set and immunoglobulin domain-containing protein 7 precursor  
Size: 120 amino acids; 13301 Da
Subcellular location: Secreted (Potential)
Caution: Could be the product of a pseudogene

Explore the universe of human proteins at neXtProt for IGHV1OR15-9: NX_A6NDP1 



ENSEMBL proteins: 
ENSP00000341641 


Human Recombinant Proteins 
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1 Gene Ontology (GO) cellular component term (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005576 extracellular region ----
About this table

IGHV1OR15-9 for ontologies           About GeneDecksing



Antibodies for IGHV1OR15-9: 
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Protein Domains/
Families
for IGHV1OR15-9 gene

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
IGHV1OR15-9 for domains           About GeneDecksing

4 InterPro domains/families:
 IPR007110 Ig-like
 IPR003596 Ig_V-set_sub
 IPR013783 Ig-like_fold
 IPR013106 Ig_V-set

Graphical View of Domain Structure for InterPro Entry A6NDP1

ProtoNet protein and cluster: A6NDP1

UniProtKB/Swiss-Prot: VSIG7_HUMAN, A6NDP1
Similarity: Contains 1 Ig-like V-type (immunoglobulin-like) domain


Gene Function
for IGHV1OR15-9 gene

(According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
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Inhib.
RNA:    		Browse for Gene Knock-down Tools from Millipore
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miRNA:Browse microRNA Mimics at Sigma-Aldrich
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Gene
Editing:		Browse CompoZr Knockout ZFN at Sigma-Aldrich 

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Cell
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Pathways & Interactions
for IGHV1OR15-9 gene

(Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
About This Section

    SABiosciences Custom Pathway-Focused PCR Arrays for IGHV1OR15-9 

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for IGHV1OR15-9

Drugs & Compounds
for IGHV1OR15-9 gene

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section
Browse Small Molecules at Sigma-Aldrich
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for IGHV1OR15-9


Transcripts
for IGHV1OR15-9 gene

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Millipore,
siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
About This Section
Inhib.
RNA:     		Browse for Gene Knock-down Tools from Millipore
Browse Nano Scale siRNA at Sigma-Aldrich
Browse siRNA at Sigma-Aldrich
Browse shRNA at Sigma-Aldrich
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Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of IGHV1OR15-9 
miRNA: Browse microRNA Mimics at Sigma-Aldrich
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QIAGEN Custom miScript Target Protector blocks miRNA-binding site of IGHV1OR15-9 
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Clones: Browse FLAG tag genes at Sigma-Aldrich
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Primers:Browse OriGene genome-wide validated SYBR primer pairs
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Search SABiosciences RT2 qPCR Primer Assays for IGHV1OR15-9


GeneLoc Exon Structure

1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000338912

Expression
for IGHV1OR15-9 gene

(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Primers from OriGene and/or SABiosciences )
About This Section

IGHV1OR15-9 expression in normal and diseased human tissues

Data from GNF BioGPS
    About these images

IGHV1OR15-9 gene expression
IGHV1OR15-9 gene electronic northern expression
IGHV1OR15-9 gene sage expression
About these images

CGAP SAGE TAG: --
Primers:Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs 
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    SABiosciences Custom PCR Arrays for IGHV1OR15-9 


Orthologs
for IGHV1OR15-9 gene

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section
 ENSEMBL Gene Tree for IGHV1OR15-9 (if available)

Paralogs
for IGHV1OR15-9 gene

(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
Paralogs for IGHV1OR15-9 gene
ENSG000002119682  ENSG000002119352  ENSG000002119612  LOC1002904152  ENSG000002119452  ENSG000002119662  ENSG000002119622  IGHV1OR21-12  
LOC1001338622  ENSG000002119392  ENSG000002119792  ENSG000002119342  

IGHV1OR15-9 for paralogs           About GeneDecksing



Genomic Variants
for IGHV1OR15-9 gene

(SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section
QIAGEN SeqTarget long-range PCR primers for resequencing IGHV1OR15-9 

Disorders & Mutations
for IGHV1OR15-9 gene

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
About This Section
   --

Medical News
for IGHV1OR15-9 gene

(Possibly Related Articles in Doctor's Guide)
About This Section
   --

Publications
for IGHV1OR15-9 gene

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
About This Section

3 PubMed articles for IGHV1OR15-9 gene integrated from 7 sources:
(articles sorted by number of sources associating them with IGHV1OR15-9)
  1. Recent translocation of variable and diversity segmen ts of the human immunoglobulin heavy chain from chromosome 14 to chromosomes 15 and 16. (PubMed id 7959766)1, 3 Nagaoka H....Anand R. (1994)
  2. Analysis of the DNA sequence and duplication history of human chromosome 15. (PubMed id 16572171)2 Zody M.C....Nusbaum C. (2006)
  3. Toward a complete human genome sequence. (PubMed id 9847074)1 Wilson R. (1998)

External Searches for IGHV1OR15-9 gene

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  
  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

Genome Databases showing IGHV1OR15-9 gene

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 651963 HGNC: 5569 Ensembl:ENSG00000188403 euGenes: HUgn651963 ECgene: IGHV1OR15-9
H-InvDB: IGHV1OR15-9

Other Databases showing IGHV1OR15-9 gene

(According to HUGE)
About This Section
   --

Specialized Databases showing IGHV1OR15-9 gene

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
IMGT entry for IGHV1/OR15-9 The international ImMunoGeneTics information system® specializing in Immunoglobulins (IG), T cell receptors (TR), Major Histocompatibility Complex (MHC) and related proteins of the immune system (RPI) of human and other vertebrate species.

Intellectual Property
for IGHV1OR15-9 gene

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from XenneX, Inc.)
About This Section
Patent Information for IGHV1OR15-9 gene:
Search GeneIP for patents involving IGHV1OR15-9

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



Products
for IGHV1OR15-9 gene

(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or Enzo Life Sciences)
About This Section

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