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Aliases & Descriptionsfor IL17F gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions interleukin 17F1 2 IL-242 3 IL-17F1 2 3 interleukin-17F2 ML11 2 5 interleukin-242 ML-11 2 Interleukin-243 Cytokine ML-12 3 IL243
Export aliases for IL17F gene to outside databases Previous GC identifers: GC06M052103 GC06M052148 GC06M052209
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Summariesfor IL17F gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for IL17F : The protein encoded by this gene is a cytokine that shares sequence similarity with IL17. This cytokine is expressed by activated T cells, and has been shown to stimulate the production of several other cytokines, including IL6, IL8, and CSF2/GM_CSF. This cytokine is also found to inhibit the angiogenesis of endothelial cells and induce endothelial cells to produce IL2, TGFB1/TGFB, and monocyte chemoattractant protein-1. (provided by RefSeq) UniProtKB/Swiss-Prot: IL17F_HUMAN, Q96PD4 Function : Stimulates the production of other cytokines such as IL-6, IL-8 and granulocyte colony-stimulating factor,and can regulate cartilage matrix turnover. Stimulates PBMC and T-cell proliferation. Inhibits angiogenesis
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Genomic Viewsfor IL17F gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the IL17F gene promoter: AP-1 NF-kappaB1 p53 CREB deltaCREB c-Fos STAT3 c-Jun GATA-1 POU2F1 Other transcription factors Search SABiosciences Chromatin IP Primers for IL17F Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 6p12 Ensembl cytogenetic band: 6p12.2 HGNC cytogenetic band: 6p12 IL17F Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure
GeneLoc location for GC06M051932: view genomic region
(about GC identifiers )
Start:
51,932,711 bp from pter
End:
51,940,522 bp from pter
Size:
7,812 bases
Orientation:
minus strand
1 alternative location : Chr 6- 52,101,479-52,109,335
RefSeq DNA sequence: NC_000006.11 NT_007592.15
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Proteinsfor IL17F gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: IL17F_HUMAN, Q96PD4 (See
protein sequence )Recommended Name: Interleukin-17F precursor Size : 163 amino acids; 18045 Da
Subunit : Homodimer; disulfide-linked
Subcellular location : Secreted
Sequence caution : Sequence=AAL14427.1; Type=Miscellaneous discrepancy; Note=Intron retention; Sequence=CAD92646.1;Type=Erroneous gene model prediction;
PDB structure from and Proteopedia : 1JPY (3D)
 3JVF (3D)
 
Secondary accessions : Q6NSI0 Q7Z6P4 Q96PI8 Q9NUE6Explore the universe of human proteins at neXtProt for IL17F: NX_Q96PD4
REFSEQ proteins: NP_443104.1 ENSEMBL proteins: ENSP00000337432 Human Recombinant Proteins 2 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
IL17F for ontologies About GeneDecksing Antibodies for IL17F: Assays for IL17F:
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Protein
Domains/ Familiesfor IL17F gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
IL17F for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q96PD4 ProtoNet protein and cluster: Q96PD4
1 Blocks protein family : IPB010345 Interleukin-17 UniProtKB/Swiss-Prot: IL17F_HUMAN, Q96PD4 Similarity : Belongs to the IL-17 family
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Gene Functionfor IL17F gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: IL17F_HUMAN, Q96PD4 Function : Stimulates the production of other cytokines such as IL-6, IL-8 and granulocyte colony-stimulating factor,and can regulate cartilage matrix turnover. Stimulates PBMC and T-cell proliferation. Inhibits angiogenesis
3 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
About this table
IL17F for ontologies About GeneDecksing Animal Models: 7 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Il17f) :
IL17F for phenotypes About GeneDecksing
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Pathways & Interactionsfor IL17F gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
IL17F for pathways About GeneDecksing 1 Millipore Pathway for IL17F 3 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathways for IL17F SABiosciences Pathway-Focused PCR Arrays including IL17F (see all 3 ): PAHS-072A PAHS-073A Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for IL17F SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for IL17F 1 Interacting protein for IL17F (ENSP00000337432 3 ) via UniProtKB, MINT, and/or STRING About this table 5/12 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 12 ):
About this table
IL17F for ontologies About GeneDecksing
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Drugs & Compoundsfor IL17F gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for IL17F
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Transcriptsfor IL17F gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for IL17F gene: NM_052872.3
Additional cDNA sequence: AF332389.1 AF384857.1 BC070124.1
2 DOTS entries : DT.97802452 DT.97784418
6 AceView cDNA sequences :
NM_052872 NM_172343 AF384857 BC070124 AF332389 CD639406
highest scoring ESTs for IL17F :AF384857 BC070124 CD639406 AF332389 NM_052872 NM_172343 Unigene Cluster for IL17F:
Interleukin 17F Hs.272295 [show with all ESTs ] Unigene Representative Sequence: AF332389 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000336123 (uc003pam.1 ) ENST00000478427 (uc003pal.1 )
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Expression for IL17F gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section IL17F expression in normal and diseased human tissues 1 / 2
2 probe-sets matching IL17F gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
234408_at2
U133-B
1
0.91
1.00
--
--
--
--
--
--
--
234408_at2
U133Plus2
1
0.91
1.00
--
--
--
--
--
--
--
About this table Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TGCAGTAAGA SOURCE GeneReport for Unigene cluster: Hs.272295 UniProtKB/Swiss-Prot: IL17F_HUMAN, Q96PD4 Tissue specificity : Expressed in activated, but not resting, CD4+ T-cells and activated monocytes
SABiosciences Expression via Pathway-Focused PCR Arrays including IL17F (see all 3 ): PAHS-072A PAHS-073A
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Orthologsfor IL17F gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for IL17F gene from 5/6 species (see all 6 )
About this table Species with no ortholog for IL17F ENSEMBL Gene Tree for IL17F (if available)
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Paralogsfor IL17F gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for IL17F gene IL17A 2 IL17D 2 IL17B 2 IL17C 2
IL17F for paralogs About GeneDecksing
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Genomic Variantsfor IL17F gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 6 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for IL17F (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for IL17F: --
QIAGEN SeqTarget long-range PCR primers for resequencing IL17F
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Disorders & Mutationsfor IL17F gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
IL17F for disorders About GeneDecksing
OMIM: 606496 10 Novoseek disease relationships for IL17F gene
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
autoimmune diseases
50.8
2
19034630 (1)
autoimmunity
48.4
1
18280574 (1), 19144313 (1)
inflammation
46.8
10
18992745 (2), 20375986 (1), 15972674 (1), 16630936 (1) (see all 10 )
necrosis
29.5
6
14601514 (1), 18061474 (1), 15657292 (1), 20519880 (1) (see all 6 )
asthma
18.7
20
15703761 (5), 16630936 (4), 16961709 (1), 19361847 (1) (see all 5 )
bronchoalveolar lavage fluid
15.7
1
15703761 (1)
tumors
15.7
20
20210523 (3), 17352237 (2), 17292626 (2), 14601514 (1) (see all 10 )
pneumonia
0
1
15477493 (1)
cancer
0
3
14601514 (1), 7779151 (1), 17644350 (1), 19904747 (1)
hyperplasia
0
1
15477493 (1)
About this table Human Gene Mutation Database (HGMD) : IL17F Genetic Association Database (GAD): IL17F Human Genome Epidemiology (HuGE) Navigator: IL17F (21 documents) Export disorders and mutations for IL17F gene to outside databases
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Medical Newsfor IL17F gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor IL17F gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/107 PubMed articles for IL17F gene, integrated from 7 sources (see all 107 ): (articles sorted by number of sources associating them with IL17F) Identification of a novel cytokine, ML-1, and its expression in subjects with asthma. (PubMed id 11591768) 1 , 2 , 3, 7 Kawaguchi M.... Huang S.-K. (2001) IL-17F, a novel cytokine selectively expressed in activated T cells and monocytes, regulates angiogenesis and endothelial cell cytokine production. (PubMed id 11591732) 1 , 2 , 3, 7 Starnes T.... Hromas R. (2001) Polymorphisms in the interleukin 17F gene (IL17F) and asthma. (PubMed id 15703761) 1 , 4, 7 Ramsey C.D....Celedon J.C. (2005) IL-17s adopt a cystine knot fold: structure and activity of a novel cytokine, IL-17F, and implications for receptor binding. (PubMed id 11574464) 1 , 2 , 7 Hymowitz S.G.... Starovasnik M.A. (2001) Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161) 1 , 2 Zhang Z. and Henzel W.J. (2004) The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404) 1 , 2 Mungall A.J.... Beck S. (2003) IL-17F sequence variant (His161Arg) is associated with protection against asthma and antagonizes wild-type IL-17F activity. (PubMed id 16630936) 1 , 7 Kawaguchi M....Adachi M. (2006) Interleukin-17F suppresses hepatocarcinoma cell growt h via inhibition of tumor angiogenesis. (PubMed id 20210523) 1 , 7 Xie Y....Yang J. (2010) Interleukin-17F signaling requires ubiquitination of interleukin-17 receptor via TRAF6. (PubMed id 17346928) 1 , 7 Rong Z....Chang Z. (2007) Role of IL-17A, IL-17F, and the IL-17 receptor in regulating growth-related oncogene-alpha and granulocyte colony-stimulating factor in bronchial epithelium: implications for airway inflammation in cystic fibrosis. (PubMed id 15972674) 1 , 7 McAllister F....Kolls J.K. (2005)
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External Searches for IL17F gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing IL17F gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing IL17F gene
(According to HUGE )
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Specialized Databases showing IL17F gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for IL17F gene: Search GeneIP for patents involving IL17F GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor IL17F gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for IL17F
ELISAs and CLIAs for IL17F
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