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IL1RAP Gene

protein-coding   GIFtS: 66

GC03P187631
interleukin 1 receptor accessory protein
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Products    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases & Descriptions
interleukin 1 receptor accessory protein1 2     OTTHUMP000002094902
C3orf131 2 3     OTTHUMP000002094892
IL1R31 2 3     OTTHUMP000002094882
IL-1RAcP1 2 3     OTTHUMP000002094912
Interleukin-1 receptor 32 3     interleukin-1 receptor accessory protein2
IL-1 receptor accessory protein2 3     OTTHUMP000002094922
IL-1R32 3     interleukin-1 receptor accessory protein beta2
IL-1R-32 3     OTTHUMP000002094862
FLJ377882     OTTHUMP000002094872

External Ids:    HGNC: 59951   Entrez Gene: 35562   Ensembl: ENSG000001960837   UniProtKB: Q9NPH33   

Export aliases for IL1RAP gene to outside databases

Previous GC identifers: GC03P187234 GC03P191494 GC03P191633 GC03P191552 GC03P191714 GC03P190231


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for IL1RAP:
Interleukin 1 induces synthesis of acute phase and proinflammatory proteins during infection, tissue damage, or stress,
by forming a complex at the cell membrane with an interleukin 1 receptor and an accessory protein. This gene encodes
the interleukin 1 receptor accessory protein. The protein is a necessary part of the interleukin 1 receptor complex
which initiates signalling events that result in the activation of interleukin 1-responsive genes. Alternative
splicing of this gene results in two transcript variants encoding two different isoforms, one membrane-bound and one
soluble. The ratio of soluble to membrane-bound forms increases during acute-phase induction or stress. (provided by
RefSeq)

UniProtKB/Swiss-Prot: IL1AP_HUMAN, Q9NPH3
Function: Mediates interleukin-1-dependent activation of NF-kappa-B. Isoform 1 is part of the membrane-bound form of
the IL-1 receptor. Signaling involves formation of a ternary complex containing IL1R1, TOLLIP, MYD88, and IRAK1 or
IRAK2. Isoform 2 modulates the response to interleukins by associating with soluble IL1R1 and enhancing
interleukin-binding to the decoy receptor

Gene Wiki entry for IL1RAP

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the IL1RAP gene promoter:
         CUTL1   POU3F1   RORalpha1   Bach1   MEF-2A   RSRFC4   Arnt   AhR   POU2F1   LCR-F1   
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for IL1RAP

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for IL1RAP 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q28   Ensembl cytogenetic band:  3q28   HGNC cytogenetic band: 3q28

IL1RAP Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
IL1RAP gene location

GeneLoc gene densities for chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P187631:  view genomic region     (about GC identifiers)

Start:
187,631,658 bp from pter
End:
187,775,020 bp from pter
Size:
143,363 bases
Orientation:
plus strand

1 alternative location:
Chr3+ 190,231,840-190,375,843     
RefSeq DNA sequence:
NC_000003.11  NT_005612.16  

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
About This Section

UniProtKB/Swiss-Prot: IL1AP_HUMAN, Q9NPH3 (See protein sequence)
Recommended Name: Interleukin-1 receptor accessory protein precursor  
Size: 570 amino acids; 65418 Da
Subcellular location: Isoform 1: Cell membrane; Single-pass type I membrane protein
Subcellular location: Isoform 2: Secreted
Subcellular location: Isoform 3: Secreted
PDB structures from and Proteopedia :
3O4O (3D)    
Secondary accessions: O14915 Q86WJ7
Alternative splicing: 3 isoforms:  Q9NPH3-1   Q9NPH3-2   Q9NPH3-3   

Explore the universe of human proteins at neXtProt for IL1RAP: NX_Q9NPH3 

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (6 alternative transcripts): 
    NP_001161400.1  NP_001161401.1  NP_001161402.1  NP_001161403.1  NP_002173.1  NP_608273.1  


    ENSEMBL proteins: 
    ENSP00000389149 ENSP00000314807 ENSP00000390541 ENSP00000412053 ENSP00000345829 ENSP00000391899 
    ENSP00000409352 ENSP00000387371 ENSP00000416296 ENSP00000398146 ENSP00000412008 ENSP00000414102 
    ENSP00000408893 ENSP00000072516 ENSP00000401132 


    Human Recombinant Proteins 
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich
    R&D Systems Recombinant & Natural Proteins for IL1RAP (IL-1 RAcP/IL-1 R3)
    Enzo Life Sciences proteins for IL1RAP
    OriGene Purified Protein: IL1RAP
    OriGene Protein Over-expression Lysate (see all 2): IL1RAP
    GenScript Custom Purified and Recombinant Proteins Services for IL1RAP 
    Novus Biologicals Protein for IL1RAP
    Novus Biologicals Lysates for IL1RAP
    Sino Biological Recombinant Protein for IL1RAP
    Browse ProSpec Recombinant Proteins

    4 Gene Ontology (GO) cellular component terms (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576 extracellular region IEA--
    GO:0005886 plasma membrane TAS--
    GO:0005887 integral to plasma membrane TAS7775431
    GO:0031224 intrinsic to membrane ----
    About this table

    IL1RAP for ontologies           About GeneDecksing



    Antibodies for IL1RAP: 
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for IL1RAP
    R&D Systems Antibodies for IL1RAP (IL-1 RAcP/IL-1 R3)
    OriGene Antibodies (see all 2): IL1RAP
    GenScript Custom Superior Antibodies Services for IL1RAP 
    Novus Biologicals Antibodies for IL1RAP
    Browse antibodies at Epitomics

    Assays for IL1RAP: 
    Browse Kits and Assays available from Millipore
    Browse ELISAs at Sigma-Aldrich
    OriGene Custom Immunoassay Development 
    Browse OriGene Fluorogenic Cell Assay Kits 
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for IL1RAP 
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for IL1RAP 


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    IL1RAP for domains           About GeneDecksing

    5/7 InterPro domains/families (see all 7):
     IPR015621 IL1-receptor
     IPR007110 Ig-like
     IPR003599 Ig_sub
     IPR000157 Toll-Interleukin_rcpt
     IPR013783 Ig-like_fold

    Graphical View of Domain Structure for InterPro Entry Q9NPH3

    ProtoNet protein and cluster: Q9NPH3

    2 Blocks protein families:
    IPB004074 Interleukin-1 receptor type I and type II family signature
    IPB004075 Interleukin-1 receptor type I family signature


    UniProtKB/Swiss-Prot: IL1AP_HUMAN, Q9NPH3
    Similarity: Belongs to the interleukin-1 receptor family
    Similarity: Contains 3 Ig-like C2-type (immunoglobulin-like) domains
    Similarity: Contains 1 TIR domain


    (According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
    About This Section

    UniProtKB/Swiss-Prot: IL1AP_HUMAN, Q9NPH3
    Function: Mediates interleukin-1-dependent activation of NF-kappa-B. Isoform 1 is part of the membrane-bound form of
    the IL-1 receptor. Signaling involves formation of a ternary complex containing IL1R1, TOLLIP, MYD88, and IRAK1 or
    IRAK2. Isoform 2 modulates the response to interleukins by associating with soluble IL1R1 and enhancing
    interleukin-binding to the decoy receptor
    Induction: Isoform 1 is down-regulated by phorbol ester treatment. Isoform 2 is induced by phorbol ester treatment

    Inhib.
    RNA:
        
    Browse for Gene Knock-down Tools from Millipore
    Browse Nano Scale siRNA at Sigma-Aldrich
    Sigma-Aldrich siRNA Panels and esiRNA and siRNA for IL1RAP
    Sigma-Aldrich shRNA Panels and shRNA for IL1RAP
    OriGene 29mer shRNA kits in GFP-retroviral vector (see all 6): IL1RAP
    OriGene shRNA RFP (see all 6): IL1RAP
    OriGene basic RS shRNA (see all 6): IL1RAP
    OriGene siRNA (see all 6): IL1RAP
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of IL1RAP 
    miRNA:Sigma-Aldrich microRNA Mimics for IL1RAP
    Browse microRNA target validation systems at Sigma-Aldrich 
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of IL1RAP 
    7 SABiosciences Assays for microRNAs that regulate IL1RAP:
    hsa-miR-299-5p hsa-miR-522 hsa-miR-29c hsa-miR-29a hsa-miR-1305 hsa-miR-29b hsa-miR-490-3p

    Gene
    Editing:
    Browse CompoZr Knockout ZFN at Sigma-Aldrich 

    Clones:Browse Clones for the Expression of Recombinant Proteins Available from Millipore
    Browse iPSC Reprogramming Factors at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector (see all 6): IL1RAP
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector (see all 6): IL1RAP
    OriGene untagged cDNA clones in CMV expression vector (see all 4): IL1RAP
    OriGene 3'-UTR clone (see all 2): IL1RAP 
    Browse MicroRNA Expression Plasmids 
    GenScript Custom cDNA clone Services for IL1RAP 
    Sino Biological Human cDNA Clone for IL1RAP

    Cell
    Lines:
      
    GenScript Custom overexpressing Cell Line Services for IL1RAP 

    Genatlas biochemistry entry for IL1RAP:
    interleukin 1,receptor accessory protein,required for the recruitment of IRAK(1) to the interleukin 1 receptor
    complex,after induction by IL1A or IL1B

    4 Gene Ontology (GO) molecular function terms (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004871 signal transducer activity TAS9065432
    GO:0004888 transmembrane receptor activity IEA--
    GO:0004908 interleukin-1 receptor activity IEA--
    GO:0005515 protein binding IPI12721283
    About this table

    IL1RAP for ontologies           About GeneDecksing

    Animal Models: 2 MGI mutant phenotypes (inferred from 1 allele(MGI details for Il1rap):

    immune systemskin/coat/nails

    IL1RAP for phenotypes           About GeneDecksing


    (Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
    About This Section


    IL1RAP for pathways           About GeneDecksing

    2 Millipore Pathways for IL1RAP
        Transcription NF-kB signaling pathway
    Immune response IL-1 signaling pathway

    3 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathways for  IL1RAP
        IL-1 Signaling
    Type I Diabetes Mellitus Signaling
    Acute Phase Response Signaling

    2 Kegg Pathways  (Kegg details for IL1RAP):
        hsa04060 Cytokine-cytokine receptor interaction
    hsa04210 Apoptosis

        SABiosciences Pathway-Focused PCR Arrays including IL1RAP (see all 3): PAHS-052A PAHS-077A  

        Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for IL1RAP
        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for IL1RAP

    5/14 Interacting proteins for IL1RAP (ENSP000000725163 Q9NPH31, 2) via UniProtKB, MINT, and/or STRING (see all 14)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    TICAM2Q86XR71EBI-525939,EBI-525927
    PRPF40AO754002MINT-61875
    FADDENSP000003018383STRING: ENSP00000301838
    IRAK2ENSP000002564583STRING: ENSP00000256458
    IRAK3ENSP000002612333STRING: ENSP00000261233
    About this table

    5/7 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 7):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006461 protein complex assembly TAS7775431
    GO:0006954 inflammatory response TAS9065432
    GO:0006955 immune response TAS9065432
    GO:0007165 signal transduction ----
    GO:0019221 cytokine-mediated signaling pathway ----
    About this table

    IL1RAP for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    IL1RAP for compounds           About GeneDecksing

    Browse Small Molecules at Sigma-Aldrich
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for IL1RAP
    5 Novoseek chemical compound relationships for IL1RAP gene
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    l-nmma 36.9 1 10501519 (1)
    nitric oxide 25.3 3 8833198 (1), 8926042 (1), 10501519 (1)
    pge2 22.5 4 8384689 (1), 1836009 (1)
    tyrosine 0 1 12483539 (1)
    dexamethasone 0 1 7684399 (1)
    About this table



    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Millipore,
    siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
    Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
    About This Section

    Inhib.
    RNA:
         
    Browse for Gene Knock-down Tools from Millipore
    Browse Nano Scale siRNA at Sigma-Aldrich
    Sigma-Aldrich siRNA Panels and esiRNA and siRNA for IL1RAP
    Sigma-Aldrich shRNA Panels and shRNA for IL1RAP
    OriGene 29mer shRNA kits in GFP-retroviral vector (see all 6): IL1RAP
    OriGene shRNA RFP (see all 6): IL1RAP
    OriGene basic RS shRNA (see all 6): IL1RAP
    OriGene siRNA (see all 6): IL1RAP
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of IL1RAP 
    miRNA: Sigma-Aldrich microRNA Mimics for IL1RAP
    Browse microRNA target validation systems at Sigma-Aldrich 
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of IL1RAP 
    7 SABiosciences Assays for microRNAs that regulate IL1RAP:
    hsa-miR-299-5p hsa-miR-522 hsa-miR-29c hsa-miR-29a hsa-miR-1305 hsa-miR-29b hsa-miR-490-3p
    Clones: Browse FLAG tag genes at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector (see all 6): IL1RAP
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector (see all 6): IL1RAP
    OriGene untagged cDNA clones in CMV expression vector (see all 4): IL1RAP
    OriGene 3'-UTR Clone (see all 2): IL1RAP 
    Browse OriGene MicroRNA Expression Plasmids 
    GenScript Custom cDNA clone Services for IL1RAP 
    Primers: OriGene genome-wide validated SYBR primer pairs: IL1RAP
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for IL1RAP: PPH00590A

    REFSEQ mRNAs for IL1RAP gene (6 alternative transcripts): 

    NM_001167928.1  NM_001167929.1  NM_001167930.1  NM_001167931.1  NM_002182.3  NM_134470.3  

    Additional cDNA sequence: 

    AB006537.1 AF029213.1 AF167343.1 AF487335.1 AF538732.1 AF538733.1 AF538734.1 AK095107.1 
    AK291669.1 BC016141.1 BC053621.1 CR591396.1 EF591790.1 FJ998418.1 

    11 DOTS entries:

    DT.95370121  DT.99928349  DT.451695  DT.101984015  DT.97811801  DT.99936756  DT.100784427  DT.100773382 
    DT.97838473  DT.100701028  DT.100784426 

    24/116 AceView cDNA sequences (see all 116):

    CA441160 NM_002182 BU189361 BG562435 AF538730 BF589698 AL135064 AA404531 
    BF059542 BU188227 BX496958 AF029213 CR591396 AF487335 BU194356 AA256257 
    AV650065 AI082664 NM_134470 BM760155 AB006537 AI086058 AA256132 AV654169 

    highest scoring ESTs for IL1RAP:

    AB006537 AA256132 AA256257 AA344485 AA401290 AA404284 AA404531 AI039647 AI141264 AI189680 

    Unigene Cluster for IL1RAP:

    Interleukin 1 receptor accessory protein
    Hs.478673  [show with all ESTs]
    Unigene Representative Sequence: NM_001167928


    GeneLoc Exon Structure

    5/11 Alternative Splicing Database (ASD) splice patterns (SP) for IL1RAP (see all 11)

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18
    SP1:              -     -     -     -           -           -     -                             -                                                   
    SP2:              -     -     -     -           -           -     -                             -                       -                           
    SP3:              -     -     -     -     -     -           -     -                             -                                                   
    SP4:              -     -     -     -     -     -           -     -                             -                       -                           
    SP5:                                                                                                                                                

    About this scheme

    ECgene alternative splicing isoforms for IL1RAP
    18/20 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 20):
    ENST00000422625 ENST00000317757(uc003fsq.2) ENST00000447382(uc003fsm.1 uc010hzg.1 uc003fsn.1)
    ENST00000461629 ENST00000465496 ENST00000412504 ENST00000342550 ENST00000434491
    ENST00000482913 ENST00000422485(uc003fsk.2 uc003fsl.2 uc010hzf.2)
    ENST00000473566 ENST00000422940 ENST00000413869 ENST00000435897 ENST00000453359
    ENST00000412080 ENST00000476929 ENST00000443369

    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Primers from OriGene and/or SABiosciences )
    About This Section

    IL1RAP expression in normal and diseased human tissues

    1  / 2  / 3

    6 probe-sets matching IL1RAP gene

    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    38546_at2, 3 U95-A 1 1.00 1.00 0.86 1.19 AB006537 1.00 0.90 0.95 1
    51136_at2, 3 U95-C 1 1.00 1.00 0.97 0.85 AI189680 0.80 1.00 0.91 1
    205227_at2, 3 U133-A 1 1.00 1.00 -- -- NM_002182 0.60 1.00 0.82 1
    210233_at2, 3 U133-A 1 1.00 1.00 -- -- AF167343 0.60 1.00 0.82 1
    205227_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    210233_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    About this table

    IL1RAP for expression           About GeneDecksing

    Data from Genenote  (Publications) and GNF BioGPS
        About these images
    IL1RAP gene expression
    IL1RAP gene electronic northern expression
    IL1RAP gene sage expression
    About these images

    CGAP SAGE TAG: AACTTTTGTA

    SOURCE GeneReport for Unigene cluster: Hs.478673

    Expression variation in blood from EXPOLDB for IL1RAP

    UniProtKB/Swiss-Prot: IL1AP_HUMAN, Q9NPH3
    Tissue specificity: Detected in liver, skin, placenta, thymus and lung

    Primers: OriGene genome-wide validated SYBR primer pairs: IL1RAP
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for IL1RAP: PPH00590A
        SABiosciences Expression via Pathway-Focused PCR Arrays including IL1RAP (see all 3): PAHS-052A PAHS-077A  


    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section

    Orthologs for IL1RAP gene from 5 species
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    IL1RAP1   -- interleukin 1 receptor accessory protein 90.19(n)
    89.81(a)
    488126  XM_545250.2  XP_545250.2 
    chimpanzee
    (Pan troglodytes)
    IL1RAP1   -- interleukin 1 receptor accessory protein 89.2(n)
    86.37(a)
    460935  XM_001161189.1  XP_001161189.1 
    rat
    (Rattus norvegicus)
    Il1rap1   -- interleukin 1 receptor accessory protein 86.32(n)
    88.95(a)
    25466  NM_012968.1  NP_037100.1 
    mouse
    (Mus musculus)
    Il1rap1 , 5 16 (18.21 cM)5
    interleukin 1 receptor accessory protein1, 5 86.9(n)1
    89.12(a)1
    161801  NM_008364.11  NP_032390.11 
     AI2559555  AK0326205  (see all 18)
    chicken
    (Gallus gallus)
    IL1RAP1   -- interleukin 1 receptor accessory protein 65.65(n)
    60.61(a)
    424908  XM_422719.2  XP_422719.2 
    About this table        Species with no ortholog for IL1RAP

    ENSEMBL Gene Tree for IL1RAP (if available)

    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section
    Paralogs for IL1RAP gene
    IL1RAPL22  IL1RAPL12  IL18RAP2  IL18R12  SIGIRR2  

    IL1RAP for paralogs           About GeneDecksing



    (SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
    About This Section

    10/1557 NCBI SNPs in IL1RAP are shown (see all 1557)
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidChr 3 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ----------
    rs7169841,2
    C,F,A,H,190323875(-) ACCTGT/CAACCC 6 -- int19Minor allele frequency- C:0.37NS EA NA 582
    rs7246081,2
    C,F,A,190348810(+) TTATCG/ATCAAA 4 -- int117Minor allele frequency- A:0.07NA EA NS WA 1256
    rs7246091,2
    C,F,A,190349078(+) GATCAA/GAACAA 4 -- int19Minor allele frequency- G:0.06NS EA NA WA 500
    rs7597831,2
    C,F,A,190330777(+) AAATAC/TATGCC 6 -- int111Minor allele frequency- T:0.30NS EA NA WA 638
    rs8857311,2
    C,F,A,190330964(+) AGGGCG/AAAGCT 6 -- int112Minor allele frequency- A:0.46MN NS EA NA WA 822
    rs9297281,2
    C,F,A,H,190330176(+) GTTTTA/GTTCCC 6 -- int113Minor allele frequency- G:0.25NS EA NA WA 662
    rs9297291,2
    C,F,190343262(+) AAAATG/AAATCA 6 -- int110Minor allele frequency- A:0.30EA NS NA WA 480
    rs9975341,2
    C,F,A,190260163(-) GTGCAA/GAAAGG 6 -- int113Minor allele frequency- G:0.30NS EA NA WA 638
    rs10157041,2
    C,F,A,190338412(+) CTGTTA/GGTCAA 6 -- int192Minor allele frequency- G:0.23NS EA PA EU CA WA NA 4590
    rs10157051,2
    C,F,A,190338659(+) GTCAAC/AAGAAT 6 -- int111Minor allele frequency- A:0.28NS EA NA WA 614
    About this table

    HapMap Linkage Disequilibrium images for IL1RAP (up to first 250kb)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 13 variations for IL1RAP
         5 CNVs: 98570 91771 47999 43475 91772
         8 Indels: 40586 12364 91773 27252 46353 12365 42740 60447

    QIAGEN SeqTarget long-range PCR primers for resequencing IL1RAP 

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
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    IL1RAP for disorders           About GeneDecksing

    OMIM: 602626

    8 Novoseek disease relationships for IL1RAP gene

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    necrosis 36.6 3 9415630 (1), 8938565 (1), 1426065 (1)
    inflammation 31.5 2 12781872 (1), 16973626 (1)
    rheumatoid arthritis 23.4 1 1386092 (1)
    bronchoalveolar lavage fluid 21.8 1 7797792 (1)
    arthritis 7.7 1 8617986 (1)
    osteoarthritis 1.74 1 1386092 (1)
    tumors 0.681 3 9415630 (1), 8938565 (1), 1426065 (1)
    mental retardation 0 1 12783849 (1)
    About this table

    Genetic Association Database (GAD): IL1RAP
    Human Genome Epidemiology (HuGE) Navigator: IL1RAP (14 documents)

    Export disorders and mutations for IL1RAP gene to outside databases

    (Possibly Related Articles in Doctor's Guide)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
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    10/156 PubMed articles for IL1RAP gene, integrated from 7 sources (see all 156):
    (articles sorted by number of sources associating them with IL1RAP)
    1. The human gene encoding the interleukin-1 receptor accessory protein (IL1RAP) maps to chromosome 3q28 by fluorescence in situ hybridization and radiation hybrid mapping. (PubMed id 9479509)1, 2, 3, 7 Dale M.... Nicklin M.J.H. (1998)
    2. The interleukin-1 receptor accessory protein (IL-1RAc P) is essential for IL-1-induced activation of interleukin-1 receptor-associate d kinase (IRAK) and stress-activated protein kinases (SAP kinases). (PubMed id 9065432)1, 3, 7 Wesche H....Martin M.U. (1997)
    3. Recruitment of IRAK to the interleukin 1 receptor complex requires interleukin 1 receptor accessory protein. (PubMed id 9371760)1, 2, 7 Huang J.... Cao Z. (1997)
    4. IL-1 signaling cascade in liver cells and the involvement of a soluble form of the IL-1 receptor accessory protein. (PubMed id 10799889)1, 2, 7 Jensen L.E.... Whitehead A.S. (2000)
    5. Expression of alternatively spliced interleukin-1 receptor accessory protein mRNAs is differentially regulated during inflammation and apoptosis. (PubMed id 12781872)1, 2, 7 Jensen L.E. and Whitehead A.S. (2003)
    6. The soluble form of IL-1 receptor accessory protein enhances the ability of soluble type II IL-1 receptor to inhibit IL-1 action. (PubMed id 12530978)1, 2, 7 Smith D.E.... Sims J.E. (2003)
    7. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    8. Characterization of a cascade of protein interactions initiated at the IL-1 receptor. (PubMed id 12659850)1, 2 Boch J.A....Auron P.E. (2003)
    9. Host defense and inflammatory gene polymorphisms are associated with outcomes after HLA-identical sibling bone marrow transplantation. (PubMed id 12393699)1, 4 Rocha V....Gluckman E. (2002)
    10. The type II IL-1 receptor interacts with the IL-1 receptor accessory protein: a novel mechanism of regulation of IL-1 responsiveness. (PubMed id 9862719)1, 7 Lang D....Martin M.U. (1998)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 3556 HGNC: 5995 AceView: IL1RAP Ensembl:ENSG00000196083 euGenes: HUgn3556
    ECgene: IL1RAP Kegg: 3556 H-InvDB: IL1RAP

    (According to HUGE)
    About This Section
      --

    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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    NameDescription
    ATLAS Chromosomes in Cancer entry for IL1RAP Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from XenneX, Inc.)
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    Patent Information for IL1RAP gene:
    Search GeneIP for patents involving IL1RAP

    GeneCards and IP:
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     Regulatory tfbs in IL1RAP promoter
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