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Aliases & Descriptionsfor IRAK1BP1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions interleukin-1 receptor-associated kinase 1 binding protein 11 2 4921528N06Rik2 AIP701 2 interleukin-1 receptor-associated kinase 1-binding protein 12 SIMPL1 2 MGC1384582 ActA binding protein 32 MGC1384602
Export aliases for IRAK1BP1 gene to outside databases Previous GC identifers: GC06P079527 GC06P079572 GC06P079633
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Summariesfor IRAK1BP1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: IKBP1_HUMAN, Q5VVH5 Function : Component of the IRAK1-dependent TNFRSF1A signaling pathway that leads to NF-kappa-B activation and isrequired for cell survival. Acts by enhancing RELA transcriptional activity (By similarity)
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Genomic Viewsfor IRAK1BP1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the IRAK1BP1 gene promoter: NF-kappaB1 NF-kappaB C/EBPbeta Meis-1 Pax-5 ATF-2 deltaCREB CREB Chx10 FOXJ2 (long isoform) Other transcription factors Search SABiosciences Chromatin IP Primers for IRAK1BP1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for IRAK1BP1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 6q14-q15 Ensembl cytogenetic band: 6q14.1 HGNC cytogenetic band: 6q14-q15 IRAK1BP1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure
GeneLoc location for GC06P076770: view genomic region
(about GC identifiers )
Start:
76,770,876 bp from pter
End:
76,802,187 bp from pter
Size:
31,312 bases
Orientation:
plus strand
1 alternative location : Chr 6+ 79,577,189-79,608,320
RefSeq DNA sequence: NC_000006.11 NT_007299.13
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Proteinsfor IRAK1BP1 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: IKBP1_HUMAN, Q5VVH5 (See
protein sequence )Recommended Name: Interleukin-1 receptor-associated kinase 1-binding protein 1 Size : 260 amino acids; 29106 Da
Subunit : Interacts with IRAK1 and RELA. Interacts with HSPA8 and HSPA1 (By similarity)
Subcellular location : Cytoplasm (By similarity). Nucleus (By similarity)Explore the universe of human proteins at neXtProt for IRAK1BP1: NX_Q5VVH5 Post-translational modifications:
Phosphorylation at Ser-56 and/or Ser-62 is required for full activity. Phosphorylated on at least one of Ser-235, Thr-237, Ser-242 and Thr-247 upon TNF-alpha activation, which favors nuclear translocation (By similarity)1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_001010844.1 ENSEMBL proteins: ENSP00000358956 Human Recombinant Proteins 2 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
IRAK1BP1 for ontologies About GeneDecksing Antibodies for IRAK1BP1: Assays for IRAK1BP1:
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Protein
Domains/ Familiesfor IRAK1BP1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
IRAK1BP1 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q5VVH5 ProtoNet protein and cluster: Q5VVH5
UniProtKB/Swiss-Prot: IKBP1_HUMAN, Q5VVH5 Domain : The intrinsically disordered region interacts with HSPA1 and HSPA8 (By similarity)Similarity : Belongs to the IRAK1BP1 family
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Gene Functionfor IRAK1BP1 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: IKBP1_HUMAN, Q5VVH5 Function : Component of the IRAK1-dependent TNFRSF1A signaling pathway that leads to NF-kappa-B activation and isrequired for cell survival. Acts by enhancing RELA transcriptional activity (By similarity)
1 Gene Ontology (GO) molecular function term (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005515 protein binding
IEA --
About this table
IRAK1BP1 for ontologies About GeneDecksing Animal Models: 1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Irak1bp1) :
IRAK1BP1 for phenotypes About GeneDecksing
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Pathways & Interactionsfor IRAK1BP1 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for IRAK1BP1 SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for IRAK1BP1 1 Interacting protein for IRAK1BP1 (ENSP00000358956 3 ) via UniProtKB, MINT, and/or STRING About this table 2 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0007249 I-kappaB kinase/NF-kappaB cascade
ISS -- GO:0045449 regulation of transcription
IEA --
About this table
IRAK1BP1 for ontologies About GeneDecksing
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Drugs & Compoundsfor IRAK1BP1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for IRAK1BP1
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Transcriptsfor IRAK1BP1 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for IRAK1BP1 gene: NM_001010844.1
Additional cDNA sequence: AK098678.1 AK309003.1 BC112253.1 BC112255.1
13 DOTS entries : DT.97811400 DT.99927665 DT.95322922 DT.95227509 DT.95348514 DT.103522 DT.121387442 DT.100675523
DT.444138 DT.75177627 DT.95170404 DT.97840245 DT.97858748 24/61 AceView cDNA sequences (see all 61 ):
AL521825 BX387112 BM127007 BF513853 AI917638 AI761886 AA480250 BX103697 AA679673 BM830836 AW450696 AI379905 AK098678 BQ435042 BU561117 CB321683 AA635174 BF056102 BI562425 BX107880 BU195215 BE501177 BX403291 AA644376
highest scoring ESTs for IRAK1BP1 :AI478629 AI265895 AI379905 AI498886 AI761886 AK098678 AW450696 BF513853 BG773243 BM127007 Unigene Cluster for IRAK1BP1:
Interleukin-1 receptor-associated kinase 1 binding protein 1 Hs.656212 [show with all ESTs ] Unigene Representative Sequence: AK309003 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for IRAK1BP1 ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 SP1 :         -           -   -     SP2 :       -   -                 SP3 :       -   -     -   -   -         SP4 :       -                   SP5 :                        
About this scheme ECgene alternative splicing isoforms for IRAK1BP1 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000369940 (uc003pim.2 uc003pin.2 uc010kbg.1 )
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Expression for IRAK1BP1 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section IRAK1BP1 expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching IRAK1BP1 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
83847_at2 , 3
U95-E
1
0.81
1.00
1.00
1.00
AI478629
1.00
1.00
1.00
1
238599_at2 , 3
U133-B
1
0.73
1.00
--
--
AI168124
0.60
1.00
0.82
1
238599_at2
U133Plus2
1
0.73
1.00
--
--
--
--
--
--
--
About this table
IRAK1BP1 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AATCCCACAT SOURCE GeneReport for Unigene cluster: Hs.656212 Expression variation in blood from EXPOLDB for IRAK1BP1
SABiosciences Custom PCR Arrays for IRAK1BP1
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Orthologsfor IRAK1BP1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for IRAK1BP1 gene from 5/8 species (see all 8 )
About this table Species with no ortholog for IRAK1BP1 ENSEMBL Gene Tree for IRAK1BP1 (if available)
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Paralogsfor IRAK1BP1 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section --
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Genomic Variantsfor IRAK1BP1 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 6 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for IRAK1BP1 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for IRAK1BP1: --
QIAGEN SeqTarget long-range PCR primers for resequencing IRAK1BP1
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Disorders & Mutationsfor IRAK1BP1 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section --
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Medical Newsfor IRAK1BP1 gene (Possibly Related Articles in
Doctor's Guide )
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Publicationsfor IRAK1BP1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 6 PubMed articles for IRAK1BP1 gene integrated from 7 sources : (articles sorted by number of sources associating them with IRAK1BP1) SIMPL is a tumor necrosis factor-specific regulator of nuclear factor-kappaB activity. (PubMed id 11096118) 1 , 2 , 3 Vig E....Harrington M.A. (2001) Phosphorylation of SIMPL modulates RelA-associated NF-kappaB-dependent transcription. (PubMed id 17079333) 1 Luo Y....Harrington M.A. (2007) Tumor necrosis factor alpha induction of NF-kappaB requires the novel coactivator SIMPL. (PubMed id 15485901) 1 Kwon H.J....Harrington M.A. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404) 2 Mungall A.J.... Beck S. (2003) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for IRAK1BP1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing IRAK1BP1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing IRAK1BP1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing IRAK1BP1 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for IRAK1BP1 gene: Search GeneIP for patents involving IRAK1BP1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor IRAK1BP1 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
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