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Aliases & Descriptionsfor ISL2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions ISL LIM homeobox 21 2 FLJ101601 2 ISL2 transcription factor, LIM/homeodomain, (islet-2)1 2 insulin gene enhancer protein ISL-22 islet-22 Islet-23
Export aliases for ISL2 gene to outside databases Previous GC identifers: GC15P072517 GC15P069719 GC15P074205 GC15P074344 GC15P074416 GC15P076629
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Summariesfor ISL2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: ISL2_HUMAN, Q96A47 Function : Transcriptional factor that defines subclasses of motoneurons that segregate into columns in the spinal cordand select distinct axon pathways (By similarity)
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Genomic Viewsfor ISL2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the ISL2 gene promoter: GATA-1 Sox9 ATF-2 POU3F2 (N-Oct-5a) POU3F2 POU3F2 (N-Oct-5b) c-Jun Egr-2 Pbx1a Arnt Other transcription factors Search SABiosciences Chromatin IP Primers for ISL2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for ISL2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 15q23 Ensembl cytogenetic band: 15q24.3 HGNC cytogenetic band: 15q24.3 ISL2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 15 GeneLoc Exon Structure
GeneLoc location for GC15P053386: view genomic region
(about GC identifiers )
Start:
53,386,124 bp from pter
End:
53,391,793 bp from pter
Size:
5,670 bases
Orientation:
plus strand
1 alternative location : Chr 15+ 76,629,065-76,634,817
RefSeq DNA sequence: NC_000015.9 NT_010194.17
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Proteinsfor ISL2 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: ISL2_HUMAN, Q96A47 (See
protein sequence )Recommended Name: Insulin gene enhancer protein ISL-2 Size : 359 amino acids; 39768 Da
Subcellular location : Nucleus (By similarity)
Secondary accessions : B3KM37Explore the universe of human proteins at neXtProt for ISL2: NX_Q96A47 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_665804.1 ENSEMBL proteins: ENSP00000290759 Human Recombinant Proteins 2 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
ISL2 for ontologies About GeneDecksing Antibodies for ISL2: Assays for ISL2:
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Protein
Domains/ Familiesfor ISL2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
ISL2 for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q96A47 ProtoNet protein and cluster: Q96A47
1 Blocks protein family : IPB001781 Zn-binding protein UniProtKB/Swiss-Prot: ISL2_HUMAN, Q96A47 Similarity : Contains 1 homeobox DNA-binding domainSimilarity : Contains 2 LIM zinc-binding domains
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Gene Functionfor ISL2 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: ISL2_HUMAN, Q96A47 Function : Transcriptional factor that defines subclasses of motoneurons that segregate into columns in the spinal cordand select distinct axon pathways (By similarity)
5/6 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 6 ):
GO ID Qualified GO term Evidence PubMed IDs GO:0003700 sequence-specific DNA binding transcription factor activity
IEA -- GO:0005515 protein binding
IEA -- GO:0008270 zinc ion binding
IEA -- GO:0030528 transcription regulator activity
IEA -- GO:0043565 sequence-specific DNA binding
IEA --
About this table
ISL2 for ontologies About GeneDecksing Animal Models: 6 MGI mutant phenotypes (inferred from 6 alleles ) (MGI details for Isl2) :
ISL2 for phenotypes About GeneDecksing
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Pathways & Interactionsfor ISL2 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Pathway-Focused PCR Array including ISL2 : PAHS-083A Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ISL2 5/6 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 6 ):
GO ID Qualified GO term Evidence PubMed IDs GO:0006355 regulation of transcription, DNA-dependent
IEA -- GO:0007275 multicellular organismal development
IEA -- GO:0021524 visceral motor neuron differentiation
IEA -- GO:0031290 retinal ganglion cell axon guidance
IEA -- GO:0045665 negative regulation of neuron differentiation
IEA --
About this table
ISL2 for ontologies About GeneDecksing
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Drugs & Compoundsfor ISL2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for ISL2
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Transcriptsfor ISL2 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for ISL2 gene: NM_145805.1
Additional cDNA sequence: AK001022.1 BC011967.1 BC012136.1 CR610026.1
2 DOTS entries : DT.305214 DT.75175862
24 AceView cDNA sequences :
BC012136 CR610026 NM_145805 AA459822 BC011967 BQ881714 AK001022 BU845300 BE778146 BX327471 BE783453 BU849219 AU118412 BU553385 AI936027 BM827241 AA459702 AA776817 AL559453 AL559452 BG472783 BX280469 BU553899 AU144983
highest scoring ESTs for ISL2 :AA776817 AA459702 AA459822 AI936027 AK001022 BC011967 BC012136 AL559452 AU118412 AU144983 Unigene Cluster for ISL2:
ISL LIM homeobox 2 Hs.444677 [show with all ESTs ] Unigene Representative Sequence: BC012136 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000290759 (uc002bbw.1 )
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Expression for ISL2 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section ISL2 expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching ISL2 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
44384_at2 , 3
U95-B
1
0.94
1.00
1.00
1.00
AA776817
1.00
1.00
1.00
1
232352_at2 , 3
U133-B
1
0.91
1.00
--
--
AK001022
0.80
1.00
0.91
1
232352_at2
U133Plus2
1
0.91
1.00
--
--
--
--
--
--
--
About this table
ISL2 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ATTGCTGGGA SOURCE GeneReport for Unigene cluster: Hs.444677 SABiosciences Expression via Pathway-Focused PCR Array including ISL2 : PAHS-083A
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Orthologsfor ISL2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for ISL2 gene from 5/7 species (see all 7 )
About this table Species with no ortholog for ISL2 ENSEMBL Gene Tree for ISL2 (if available)
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Paralogsfor ISL2 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for ISL2 gene ISL1 2 LMO2 2 LMO3 2 LMO1 2
ISL2 for paralogs About GeneDecksing
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Genomic Variantsfor ISL2 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 15 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for ISL2 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for ISL2: --
QIAGEN SeqTarget long-range PCR primers for resequencing ISL2
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Disorders & Mutationsfor ISL2 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
ISL2 for disorders About GeneDecksing
OMIM: 609481 Export disorders and mutations for ISL2 gene to outside databases
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Medical Newsfor ISL2 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor ISL2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 9 PubMed articles for ISL2 gene integrated from 7 sources : (articles sorted by number of sources associating them with ISL2) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935) 1 , 2 Beausoleil S.A....Gygi S.P. (2004) Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. (PubMed id 19413330) 2 Gauci S....Mohammed S. (2009) Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332) 2 Mayya V.... Han D.K. (2009) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 2 Dephoure N.... Gygi S.P. (2008) Cloning and expression of a novel human gene, Isl-2, encoded a LIM-homeodomain protein. (PubMed id 17091338) 1 Li Y....Liu M. (2007) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) The nuclear LIM domain interactor NLI mediates homo- and heterodimerization of LIM domain transcription factors. (PubMed id 9452425) 1 Jurata L.W....Gill G.N. (1998)
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External Searches for ISL2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing ISL2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing ISL2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing ISL2 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for ISL2 gene: Search GeneIP for patents involving ISL2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor ISL2 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for ISL2
ELISAs and CLIAs for ISL2
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