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Aliases & Descriptionsfor KCNH3 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions potassium voltage-gated channel, subfamily H (eag-related), member 31 2 ELK channel 22 3 BEC11 2 3 5 ELK22 3 Kv12.21 2 KIAA12822 3 Ether-a-go-go-like potassium channel 22 3 elk21 Voltage-gated potassium channel subunit Kv12.22 3 potassium voltage-gated channel subfamily H member 32 Brain-specific eag-like channel 12 3 ether-a-go-go K(+) channel family member2
Export aliases for KCNH3 gene to outside databases Previous GC identifers: GC12P050150 GC12P049989 GC12P049649 GC12P048219 GC12P049933
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Summariesfor KCNH3 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: KCNH3_HUMAN, Q9ULD8 Function : Pore-forming (alpha) subunit of voltage-gated potassium channel. Elicits an outward current with fastinactivation. Channel properties may be modulated by cAMP and subunit assembly summary
for KCNH3 : Voltage-gated potassium channels (KV) belong to the 6-TM family of potassium channel that also comprises theCa2+-activated Slo (actually 7-TM) and the Ca2+-activated SK subfamilies. The pore-forming alpha-subunitscontain a single pore-forming region and combine to form tetramers. Heteromeric channels can be formedwithin subfamilies e.g. KV1.1 with KV1.2 and KCNQ2 with KCNQ3.
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Genomic Viewsfor KCNH3 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the KCNH3 gene promoter: PPAR-gamma2 PPAR-gamma1 LUN-1 POU2F1 NF-kappaB NF-kappaB1 RelA RREB-1 LCR-F1 p300 Other transcription factors Search SABiosciences Chromatin IP Primers for KCNH3 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for KCNH3
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 12q13 Ensembl cytogenetic band: 12q13.12 HGNC cytogenetic band: 12q13 KCNH3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure
GeneLoc location for GC12P046963: view genomic region
(about GC identifiers )
Start:
46,963,792 bp from pter
End:
46,982,929 bp from pter
Size:
19,138 bases
Orientation:
plus strand
1 alternative location : Chr 12+ 49,932,940-49,952,059
RefSeq DNA sequence: NC_000012.11 NT_029419.12
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Proteinsfor KCNH3 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: KCNH3_HUMAN, Q9ULD8 (See
protein sequence )Recommended Name: Potassium voltage-gated channel subfamily H member 3 Size : 1083 amino acids; 117129 Da
Subunit : The potassium channel is probably composed of a homo- or heterotetrameric complex of pore-forming alphasubunits that can associate with modulating beta subunits
Subcellular location : Membrane; Multi-pass membrane protein
Sequence caution : Sequence=BAA86596.1; Type=Erroneous initiation;
Secondary accessions : Q9UQ06Explore the universe of human proteins at neXtProt for KCNH3: NX_Q9ULD8
REFSEQ proteins: NP_036416.1 ENSEMBL proteins: ENSP00000257981 Human Recombinant Proteins 2 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
KCNH3 for ontologies About GeneDecksing Antibodies for KCNH3: Assays for KCNH3:
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Protein
Domains/ Familiesfor KCNH3 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
KCNH3 for domains About GeneDecksing 5/10 InterPro domains/families (see all 10 ):
Graphical View of Domain Structure for InterPro Entry Q9ULD8 ProtoNet protein and cluster: Q9ULD8
5/6 Blocks protein families (see all 6 ): IPB000014 PAS domain IPB000595 Cyclic nucleotide-binding domain IPB001610 PAC motif IPB003938 EAG/ELK/ERG potassium channel family signature IPB003950 ELK potassium channel family signature UniProtKB/Swiss-Prot: KCNH3_HUMAN, Q9ULD8 Domain : The segment S4 is probably the voltage-sensor and is characterized by a series of positively charged aminoacids at every third position Similarity : Belongs to the potassium channel family. H (Eag) (TC 1.A.1.20) subfamily. Kv12.2/KCNH3 sub-subfamilySimilarity : Contains 1 cyclic nucleotide-binding domainSimilarity : Contains 1 PAC (PAS-associated C-terminal) domainSimilarity : Contains 1 PAS (PER-ARNT-SIM) domain
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Gene Functionfor KCNH3 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: KCNH3_HUMAN, Q9ULD8 Function : Pore-forming (alpha) subunit of voltage-gated potassium channel. Elicits an outward current with fastinactivation. Channel properties may be modulated by cAMP and subunit assembly
Genatlas biochemistry entry for KCNH3 :potassium voltage-gated channel,subfamily H (eag-related),member 3,ether-a-go-go K+ channel family member,exclusively expressed in the brain,mainly in the cerebral cortex,amygdala,hippocampus and striatum 5 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
About this table
KCNH3 for ontologies About GeneDecksing Animal Models: 2 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Kcnh3) :
KCNH3 for phenotypes About GeneDecksing
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Pathways & Interactionsfor KCNH3 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for KCNH3 SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for KCNH3 1 Interacting protein for KCNH3 (Q9ULD8 2 ) via UniProtKB, MINT, and/or STRING About this table 5/6 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 6 ):
About this table
KCNH3 for ontologies About GeneDecksing
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Drugs & Compoundsfor KCNH3 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Compounds for KCNH3 available from Tocris Bioscience Compound Action
CAS
number AM 92016 hydrochloride KV channel blocker [178894-81-0] KN-93 CaM kinase II inhibitor. Also K+ channel blocker (KV) [139298-40-1] SG 209 K+ channel opener; vasodilator [83440-03-3] 4-Aminopyridine Non-selective KV channel blocker [504-24-5]
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Transcriptsfor KCNH3 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for KCNH3 gene: NM_012284.1
Additional cDNA sequence: AB022696.1 AB033108.1 BC033141.1 BC144254.1 BC150602.1
1 DOTS entry : DT.403685
24/39 AceView cDNA sequences (see all 39 ):
BX095172 NM_012284 AI272282 AW248878 BC033141 AB033108 BM452074 AB022696 CA433932 CD106245 BU187340 AI627894 AW251056 AW082228 U69184 M79045 BV185837 AI017220 AI124750 AL134774 BG060031 AW249035 AW248597 BE646495
highest scoring ESTs for KCNH3 :AB022696 AB033108 AI124750 AI627894 AI873733 AW248597 AW248878 AW249035 AW251056 AW518396 Unigene Cluster for KCNH3:
Potassium voltage-gated channel, subfamily H (eag-related), member 3 Hs.64064 [show with all ESTs ] Unigene Representative Sequence: NM_012284 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for KCNH3 ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 SP1 :               -                       SP2 :                                     SP3 :                                    
About this scheme ECgene alternative splicing isoforms for KCNH3 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000257981 (uc001ruh.1 uc010smj.1 )
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Expression for KCNH3 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section KCNH3 expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching KCNH3 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
53681_at2 , 3
U95-C
1
0.62
1.00
1.00
1.00
R38427
0.60
1.00
0.82
1
223726_at2 , 3
U133-B
1
1.00
1.00
--
--
AB022696
0.80
1.00
0.91
1
223726_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
About this table
KCNH3 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.64064 UniProtKB/Swiss-Prot: KCNH3_HUMAN, Q9ULD8 Tissue specificity : Detected only in brain, in particular in the telencephalon. Detected in the cerebral cortex,occipital pole, frontal and temporal lobe, putamen, amygdala, hippocampus and caudate nucleus
SABiosciences Custom PCR Arrays for KCNH3
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Orthologsfor KCNH3 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for KCNH3 gene from 5/7 species (see all 7 )
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
KCNH31
--
potassium voltage-gated channel, subfamily H (eag-related), more
89.57(n) 92.69(a)
486556 XM_543682.2 XP_543682.2
chimpanzee (Pan troglodytes)
KCNH31
--
potassium voltage-gated channel, subfamily H (eag-related), more
99.63(n) 99.72(a)
451880 XM_509046.2 XP_509046.2
cow (Bos taurus)
KCNH31
--
potassium voltage-gated channel, subfamily H (eag-related), more
92.3(n) 95.9(a)
514409 XM_592255.3 XP_592255.3
rat (Rattus norvegicus)
Kcnh31
--
potassium voltage-gated channel, subfamily H (eag-related), more
89.32(n) 95.94(a)
27150 NM_017108.1 NP_058804.1
mouse (Mus musculus)
Kcnh31 , 5
15 (56.08 cM) 5
potassium voltage-gated channel, subfamily H (eag-related), more 1, 5
89.72(n) 1 95.84(a) 1
16512 1 NM_010601.2 1 NP_034731.2 1 AF109143 5 AK135093 5 (see all 10 )
About this table Species with no ortholog for KCNH3 ENSEMBL Gene Tree for KCNH3 (if available)
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Paralogsfor KCNH3 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for KCNH3 gene KCNH5 2 KCNH6 2 KCNH2 2 KCNH7 2 KCNH4 2 KCNH8 2 KCNH1 2
KCNH3 for paralogs About GeneDecksing
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Genomic Variantsfor KCNH3 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 12 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for KCNH3 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for KCNH3: --
QIAGEN SeqTarget long-range PCR primers for resequencing KCNH3
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Disorders & Mutationsfor KCNH3 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
KCNH3 for disorders About GeneDecksing
OMIM: 604527 Export disorders and mutations for KCNH3 gene to outside databases
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Medical Newsfor KCNH3 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor KCNH3 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 8 PubMed articles for KCNH3 gene integrated from 7 sources : (articles sorted by number of sources associating them with KCNH3) New ether-a-go-go K+ channel family members localized in human telencephalon. (PubMed id 10455180) 1 , 2 , 3, 7 Miyake A.... Furuichi K. (1999) International Union of Pharmacology. LIII. Nomenclatu re and molecular relationships of voltage-gated potassium channels. (PubMed id 16382104) 1 , 3 Gutman G.A....Wang X. (2005) Prediction of the coding sequences of unidentified human genes. XV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10574462) 1 , 2 Nagase T.... Ohara O. (1999) Interaction of human immunodeficiency virus gp120 wit h the voltage-gated potassium channel BEC1. (PubMed id 20638388) 1 Herrmann M....Mueller-Lantzsch N. (2010 Aug 20) Disruption of the ether-a-go-go K+ channel gene BEC1/ KCNH3 enhances cognitive function. (PubMed id 19923296) 1 Miyake A....Katou M. (2009) Distribution and functional properties of human KCNH8 (Elk1) potassium channels. (PubMed id 12890647) 1 Zou A.... Wickenden A.D. (2003) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Functional up-regulation of HERG K+ channels in neoplastic hematopoietic cells. (PubMed id 11893742) 7 Smith G.A....Schlichter L.C. (2002)
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External Searches for KCNH3 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing KCNH3 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing KCNH3 gene
(According to HUGE )
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Specialized Databases showing KCNH3 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for KCNH3 gene: Search GeneIP for patents involving KCNH3 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor KCNH3 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Tocris compounds for KCNH3
ELISAs and CLIAs for KCNH3
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Aliases for KCNH3
Databases for KCNH3
Disorders for KCNH3
Domains/Families for KCNH3
Drugs/Compounds for KCNH3
Expression for KCNH3
Function for KCNH3
Genomic Views for KCNH3
Intellectual Property for KCNH3
Medical News for KCNH3
Orthologs for KCNH3
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Pathways/Interactions for KCNH3
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Proteins for KCNH3
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Summaries for KCNH3
Transcripts for KCNH3
Variants for KCNH3
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