Aliases &
Descriptions
for KIAA0408 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
About This Section
|
| Aliases & Descriptions |
|---|
| KIAA04081 2 | | hypothetical protein LOC97292 | | FLJ439952 | | OTTHUMP000000171742 | | RP3-403A15.22 |
Export aliases for KIAA0408 gene to outside databasesPrevious GC identifers: GC06M127421 GC06M127608 GC06M127742 GC06M127745 |
Summaries
for KIAA0408 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for KIAA0408 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60),
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences)
About This Section
|
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the KIAA0408 gene promoter:
NRSF form 2 NRSF form 1 CUTL1 SRF POU2F1 FOXJ2 (long isoform) RP58 Arnt C/EBPalpha AhR
Other transcription factors
Search SABiosciences Chromatin IP Primers for KIAA0408
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for KIAA0408  |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 6q22.33 Ensembl cytogenetic band: 6q22.33 HGNC cytogenetic band: 6q22.33KIAA0408 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M127803: view genomic region
(about GC identifiers)
Start:
|
127,759,551 bp from pter |
End:
|
127,840,078 bp from pter |
Size:
|
80,528 bases |
Orientation:
|
minus strand |
1 alternative location:
| Chr6- 125,336,237-125,357,220 |
|
Proteins
for KIAA0408 gene
(According to
1UniProtKB,
neXtProt,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological, and/or
ProSpec,
Biochemical Assays by
Millipore,
Sigma-Aldrich,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene,
Antibodies by
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals, and/or
Epitomics)
About This Section
|
UniProtKB/Swiss-Prot: K0408_HUMAN, Q6ZU52 (See
protein sequence)Recommended Name: Uncharacterized protein KIAA0408 Size: 694 amino acids; 79163 Da
Sequence caution: Sequence=BAA23704.2; Type=Erroneous initiation;
Secondary accessions: B3KRE5 O43158 Q5TF20 Q7L2M2Alternative splicing: 2 isoforms: Q6ZU52-1 Q6ZU52-2 Explore the universe of human proteins at neXtProt for KIAA0408: NX_Q6ZU52
Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_055517.3
ENSEMBL proteins: ENSP00000357264 ENSP00000009606 ENSP00000385515
Human Recombinant Proteins
Antibodies for KIAA0408:
Assays for KIAA0408: |
Protein
Domains/
Families
for KIAA0408 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q6ZU52 |
Gene Function
for KIAA0408 gene
(According to UniProtKB,
IUBMB,and/or
Genatlas, Animal models from MGI Dec 24 2010,
shRNA from
OriGene,
Sigma-Aldrich,
RNAi from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Clones from Millipore,
Sigma-Aldrich,
OriGene,
GenScript,
Sino Biological,
Cell Lines from GenScript,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene.)
About This Section
|
1 Gene Ontology (GO) molecular function term (GO ID links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005515 | protein binding |
IPI | -- |
About this table
KIAA0408 for ontologies About GeneDecksing
|
Pathways & Interactions
for KIAA0408 gene
(Pathways according to
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
PCR Arrays from
SABiosciences,
Proteins Network according to
SABiosciences,
Sigma-Aldrich,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene).
About This Section
|
SABiosciences Custom Pathway-Focused PCR Arrays for KIAA0408
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for KIAA0408
5/20 Interacting proteins for KIAA0408 (Q6ZU521, 2) via UniProtKB, MINT, and/or STRING (see all 20)About this table
|
Drugs & Compounds
for KIAA0408 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for KIAA0408
|
Transcripts
for KIAA0408 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Tagged/untagged cDNA clones from
OriGene,
Sigma-Aldrich,
GenScript,
Primers from
OriGene and/or
SABiosciences)
About This Section
|
REFSEQ mRNAs for KIAA0408 gene: NM_014702.4 24/78 AceView cDNA sequences (see all 78): AI249493 BC018396 CR591062 AI018230 AX746974 BM671495 AI911498 AI674081 AL118748 AK096490 BI517371 AK091424 AI694978 AK125983 AL712906 BE552225 BE796893 CB156548 AB007868 AK127114 BM807573 BQ028165 BI766291 AW003608
 highest scoring ESTs for KIAA0408:AK091416 AK091424 AK096490 AK125983 BG717349 BI463537 BI822141 AA010527 AA010528 AA167627
GeneLoc Exon Structure
5/11 Alternative Splicing Database (ASD) splice patterns (SP) for KIAA0408 (see all 11)
| ExUns: | 1 | ^ | 2 | ^ | 3a | · | 3b | ^ | 4a | · | 4b | ^ | 5 | ^ | 6 | ^ | 7a | · | 7b | · | 7c | · | 7d | · | 7e | ^ | 8 | ^ | 9 | ^ | 10a | · | 10b | ^ | 11a | · | 11b | · | 11c | · | 11d | ^ | 12 | ^ | 13a | · | 13b | · | 13c | · | 13d | ^ |
|---|
|
| SP1: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - | | - | | - | | | | | | | | - | | | | | | | | | | |
| SP2: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - | | - | | - | | | | | | | | - | | | | | | | | | | |
| SP3: | | | | | - | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP4: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - | | - | | - | | - | | | | | | | | | | | | | | | | |
| SP5: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - | | | | | | | | - | | | | | | | | | |
About this scheme
ECgene alternative splicing isoforms for KIAA0408
13 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000368281(uc003qba.2 uc003qbb.2) ENST00000481848 ENST00000465254
ENST00000473298 ENST00000474293 ENST00000487331 ENST00000472335 ENST00000483725
ENST00000464495 ENST00000465909 ENST00000467753 ENST00000009606(uc011ebs.1 uc003qbc.2 uc003qbd.2)
ENST00000405702
|
Expression
for KIAA0408 gene
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Primers from
OriGene and/or
SABiosciences
)
About This Section
| KIAA0408 expression in normal and diseased human tissues
1 / 2 / 3 5 probe-sets matching KIAA0408 gene
Affymetrix
probe-set |
Array |
GeneAnnot data |
GeneNote data |
GeneTide data |
| # genes |
Sensitivity |
Specificity |
Correlation |
Length |
Gb_Accession |
Consensus |
Uniqueness |
Score |
Rank |
| 37499_at2, 3
|
U95-A |
2 |
0.94 |
0.77 |
0.91 |
0.59 |
AB007868 |
0.60 |
1.00 |
0.82 |
1 |
| 52544_at2
|
U95-C |
2 |
0.38 |
0.64 |
0.93 |
1.67 |
-- |
-- |
-- |
-- |
-- |
| 44332_at2
|
U95-B |
2 |
0.38 |
0.50 |
0.95 |
0.91 |
-- |
-- |
-- |
-- |
-- |
| 205496_at2, 3
|
U133-A |
2 |
0.82 |
0.67 |
-- |
-- |
NM_014702 |
0.60 |
1.00 |
0.82 |
1 |
| 205496_at2
|
U133Plus2 |
2 |
0.82 |
0.67 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
About this table
KIAA0408 for expression About GeneDecksing
Data from
Genenote
(Publications) and GNF BioGPS
About these images
About these images
CGAP SAGE TAG: --
Expression variation in blood from EXPOLDB for KIAA0408 SABiosciences Custom PCR Arrays for KIAA0408
|
Orthologs
for KIAA0408 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for KIAA0408 gene from 3 species
About this table Species with no ortholog for KIAA0408
ENSEMBL Gene Tree for KIAA0408 (if available) |
Paralogs
for KIAA0408 gene(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| -- |
Genomic Variants
for KIAA0408 gene(SNPs according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section
| | | QIAGEN SeqTarget long-range PCR primers for resequencing KIAA0408 |
|
Disorders & Mutations
for KIAA0408 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
LSDB, HGMD, GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Medical News
for KIAA0408 gene(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications
for KIAA0408 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6UniProtKB/TrEMBL, and/or
7Novoseek)
About This Section
|
6 PubMed articles for KIAA0408 gene integrated from 7 sources:
(articles sorted by number of sources associating them with KIAA0408)- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)1, 2 Mungall A.J.... Beck S. (2003)
- Prediction of the coding sequences of unidentified human genes. VIII. 78 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 9455477)1, 2 Ishikawa K....Ohara O. (1997)
- Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)1 Rual J.F....Vidal M. (2005)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for KIAA0408 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing KIAA0408 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing KIAA0408 gene
(According to HUGE)
About This Section
| |
Specialized Databases showing KIAA0408 gene(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for KIAA0408 gene:
Search GeneIP for patents involving KIAA0408
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for KIAA0408 gene(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or
Enzo Life Sciences)
About This Section
|
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