Aliases &
Descriptions
for KIAA0564 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
About This Section
|
| Aliases & Descriptions |
|---|
| KIAA05641 2 | | FLJ217792 | | hypothetical protein LOC230782 | | OTTHUMP000000183232 |
Export aliases for KIAA0564 gene to outside databasesPrevious GC identifers: GC13M040142 GC13M036127 GC13M041077 GC13M039938 GC13M041038 GC13M042140 |
Summaries
for KIAA0564 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for KIAA0564 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60),
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences)
About This Section
|
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the KIAA0564 gene promoter:
MyoD GCNF-1 GCNF-2 Lmo2 RORalpha1 RORalpha2 AREB6 Elk-1 FOXL1 NF-1
Other transcription factors
Search SABiosciences Chromatin IP Primers for KIAA0564
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for KIAA0564  |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 13q14.11 Ensembl cytogenetic band: 13q14.11 HGNC cytogenetic band: 13q14.11KIAA0564 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome 13 GeneLoc Exon Structure GeneLoc location for GC13M022941: view genomic region
(about GC identifiers)
Start:
|
22,941,888 bp from pter |
End:
|
23,338,138 bp from pter |
Size:
|
396,251 bases |
Orientation:
|
minus strand |
1 alternative location:
| Chr13- 42,140,961-42,535,256 |
RefSeq DNA sequence:- NC_000013.10 NT_024524.14
|
Proteins
for KIAA0564 gene
(According to
1UniProtKB,
neXtProt,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological, and/or
ProSpec,
Biochemical Assays by
Millipore,
Sigma-Aldrich,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene,
Antibodies by
Millipore,
Sigma-Aldrich,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals, and/or
Epitomics)
About This Section
|
UniProtKB/Swiss-Prot: K0564_HUMAN, A3KMH1 (See
protein sequence)Recommended Name: Uncharacterized protein KIAA0564 precursor Size: 1905 amino acids; 214824 Da
Subcellular location: Secreted (Potential)
Secondary accessions: O60310 Q5JTP6 Q5VW08 Q7Z6I9 Q86YC9 Q8N3E4Alternative splicing: 3 isoforms: A3KMH1-1 A3KMH1-2 A3KMH1-3 Explore the universe of human proteins at neXtProt for KIAA0564: NX_A3KMH1
Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins (2 alternative transcripts):
NP_001009814.1 NP_055873.1
ENSEMBL proteins: ENSP00000281496 ENSP00000251030 ENSP00000420750 ENSP00000381834 ENSP00000368612 ENSP00000416079
Human Recombinant Proteins
1 Gene Ontology (GO) cellular component term (GO ID links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005576 | extracellular region |
IEA | -- |
About this table
KIAA0564 for ontologies About GeneDecksing
Antibodies for KIAA0564:
Assays for KIAA0564: |
Protein
Domains/
Families
for KIAA0564 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
KIAA0564 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry A3KMH1ProtoNet protein and cluster: A3KMH1 UniProtKB/Swiss-Prot: K0564_HUMAN, A3KMH1Similarity: Contains 1 VWFA domain |
Gene Function
for KIAA0564 gene
(According to UniProtKB,
IUBMB,and/or
Genatlas, Animal models from MGI Dec 24 2010,
shRNA from
OriGene,
Sigma-Aldrich,
RNAi from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Clones from Millipore,
Sigma-Aldrich,
OriGene,
GenScript,
Sino Biological,
Cell Lines from GenScript,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene.)
About This Section
|
4 Gene Ontology (GO) molecular function terms (GO ID links to tree view): About this table
KIAA0564 for ontologies About GeneDecksing
|
Pathways & Interactions
for KIAA0564 gene
(Pathways according to
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
PCR Arrays from
SABiosciences,
Proteins Network according to
SABiosciences,
Sigma-Aldrich,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene).
About This Section
|
SABiosciences Custom Pathway-Focused PCR Arrays for KIAA0564
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for KIAA0564
|
Drugs & Compounds
for KIAA0564 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for KIAA0564
|
Transcripts
for KIAA0564 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
Millipore,
siRNAs from
Sigma-Aldrich,
OriGene,
Qiagen,
Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
microRNA from Sigma-Aldrich,
Qiagen,
SABiosciences,
Tagged/untagged cDNA clones from
OriGene,
Sigma-Aldrich,
GenScript,
Primers from
OriGene and/or
SABiosciences)
About This Section
|
REFSEQ mRNAs for KIAA0564 gene (2 alternative transcripts): NM_001009814.1 NM_015058.1 Additional cDNA sequence: AB011136.1 AK025432.1 AK095155.1 AK308568.1 AL834181.1 BC042924.2 BC053674.1 BC131802.1 9 DOTS entries: DT.117201 DT.100783866 DT.100739223 DT.75137661 DT.117200 DT.91759149 DT.92018050 DT.120793988 DT.120794008 24/137 AceView cDNA sequences (see all 137): BP428669 AK025432 AI540219 AA782150 AI383621 AV682493 AL834181 BM127934 CK819248 BU167495 BC042924 BE222744 BX281424 AI478249 AI039391 AI332568 AW132012 AI300333 BU178214 BU676125 AW611936 BM986771 AW772662 AA322520 Unigene Cluster for KIAA0564: KIAA0564 Hs.368282 [show with all ESTs]Unigene Representative Sequence: NM_015058
GeneLoc Exon Structure
7 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000281496(uc001uyk.2) ENST00000251030 ENST00000478987 ENST00000379302
ENST00000398857 ENST00000379310(uc001uyj.2) ENST00000443483
|
Expression
for KIAA0564 gene
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Primers from
OriGene and/or
SABiosciences
)
About This Section
| KIAA0564 expression in normal and diseased human tissues
1 / 2 5 probe-sets matching KIAA0564 gene
Affymetrix
probe-set |
Array |
GeneAnnot data |
GeneNote data |
GeneTide data |
| # genes |
Sensitivity |
Specificity |
Correlation |
Length |
Gb_Accession |
Consensus |
Uniqueness |
Score |
Rank |
| 31849_at2
|
U95-A |
1 |
1.00 |
1.00 |
1.00 |
1.00 |
-- |
-- |
-- |
-- |
-- |
| 214231_s_at2
|
U133-A |
1 |
1.00 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
| 212946_at2
|
U133-A |
1 |
1.00 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
| 214231_s_at2
|
U133Plus2 |
1 |
1.00 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
| 212946_at2
|
U133Plus2 |
1 |
1.00 |
1.00 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
About this table
KIAA0564 for expression About GeneDecksing
Data from
Genenote
(Publications) and GNF BioGPS
About these images
About these images
CGAP SAGE TAG: GAAAGATACT
SOURCE GeneReport for Unigene cluster: Hs.368282
Expression variation in blood from EXPOLDB for KIAA0564 SABiosciences Custom PCR Arrays for KIAA0564
|
Orthologs
for KIAA0564 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for KIAA0564 gene from 5/12 species (see all 12)
About this table Species with no ortholog for KIAA0564
ENSEMBL Gene Tree for KIAA0564 (if available) |
Paralogs
for KIAA0564 gene(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| -- |
Genomic Variants
for KIAA0564 gene(SNPs according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Chr 13 pos | Sequence | Recs | AA
Chg | Type | More | Recs | Allele
freq | Pop | Total
sample | More |
|---|
About this tableHapMap Linkage Disequilibrium images for KIAA0564 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 8 variations for KIAA0564
6 CNVs: 9217 66429 101714 86809 23463 86808
2 Indels: 45167 61313 | | QIAGEN SeqTarget long-range PCR primers for resequencing KIAA0564 |
|
Disorders & Mutations
for KIAA0564 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
LSDB, HGMD, GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
KIAA0564 for disorders About GeneDecksing
Human Genome Epidemiology (HuGE) Navigator: KIAA0564 (5 documents)
Export disorders and mutations for KIAA0564 gene to outside databases
|
Medical News
for KIAA0564 gene(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications
for KIAA0564 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6UniProtKB/TrEMBL, and/or
7Novoseek)
About This Section
|
10/11 PubMed articles for KIAA0564 gene, integrated from 7 sources (see all 11):
(articles sorted by number of sources associating them with KIAA0564)- Prediction of the coding sequences of unidentified human genes. IX. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PubMed id 9628581)1, 2, 3 Nagase T....Ohara O. (1998)
- A genome-wide association study of bipolar disorder a nd comorbid migraine. (PubMed id 20528957)1 Oedegaard K.J.... J.R. (2010)
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
- A genome-wide scan for common alleles affecting risk for autism. (PubMed id 20663923)1 Anney R....Hallmayer J. (2010 Oct 15)
- Defining the human deubiquitinating enzyme interactio n landscape. (PubMed id 19615732)1 Sowa M.E....Harper J.W. (2009)
- The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
- The DNA sequence and analysis of human chromosome 13. (PubMed id 15057823)2 Dunham A.... Ross M.T. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
- Protein-protein interactions between large proteins: two-hybrid screening using a functionally classified library composed of long cDNAs. (PubMed id 12421765)1 Nakayama M....Ohara O. (2002)
|
External Searches for KIAA0564 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing KIAA0564 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing KIAA0564 gene
(According to HUGE)
About This Section
| |
Specialized Databases showing KIAA0564 gene(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for KIAA0564 gene:
Search GeneIP for patents involving KIAA0564
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for KIAA0564 gene(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or
Enzo Life Sciences)
About This Section
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