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KLK9 Gene

protein-coding   GIFtS: 47

GC19M047838
kallikrein-related peptidase 9
(Previous name: kallikrein 9 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Products    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases & Descriptions
kallikrein-related peptidase 91 2     kallikrein 91
KLK-L31 2 3     kallikrein-92
Kallikrein-like protein 32 3     EC 3.4.21.-3
KLKL32 5     

External Ids:    HGNC: 63701   Entrez Gene: 2843662   Ensembl: ENSG000002130227   UniProtKB: Q9UKQ93   

Export aliases for KLK9 gene to outside databases

Previous GC identifers: GC19M052136 GC19M051867 GC19M056181 GC19M056192 GC19M056197 GC19M056194 GC19M051505


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for KLK9:
The protein encoded by this gene is a kallikrein-related serine protease. This gene is activated by steroid hormones in
a human breast cancer cell line, making it a good marker for cancer detection. The encoded protein is found primarily
in the cytoplasm.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the KLK9 gene promoter:
         GR-alpha   GR-beta   C/EBPbeta   MZF-1   AP-4   NF-1   Hlf   RFX1   NF-kappaB   NF-kappaB1   
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for KLK9

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.41   Ensembl cytogenetic band:  19q13.41   HGNC cytogenetic band: 19q13.33

KLK9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
KLK9 gene location

GeneLoc gene densities for chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M047838:  view genomic region     (about GC identifiers)

Start:
47,838,535 bp from pter
End:
47,845,658 bp from pter
Size:
7,124 bases
Orientation:
minus strand

1 alternative location:
Chr19- 51,505,769-51,512,890     
RefSeq DNA sequence:
NC_000019.9  NT_011109.16  

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
About This Section

UniProtKB/Swiss-Prot: KLK9_HUMAN, Q9UKQ9 (See protein sequence)
Recommended Name: Kallikrein-9 precursor  
Size: 250 amino acids; 27513 Da
Subcellular location: Secreted (Probable)

Explore the universe of human proteins at neXtProt for KLK9: NX_Q9UKQ9 

REFSEQ proteins: NP_036447.1  

ENSEMBL proteins: 
ENSP00000250366 ENSP00000366028 


Human Recombinant Proteins 
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1 Gene Ontology (GO) cellular component term (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005576 extracellular region NAS--
About this table

KLK9 for ontologies           About GeneDecksing



Antibodies for KLK9: 
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Uscn ELISAs and CLIAs for KLK9 


(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

KLK9 for domains           About GeneDecksing

4 InterPro domains/families:
 IPR001314 Peptidase_S1A
 IPR001254 Peptidase_S1_S6
 IPR018114 Peptidase_S1/S6_AS
 IPR009003 Ser/Cys_Pept_Trypsin-like

Graphical View of Domain Structure for InterPro Entry Q9UKQ9

ProtoNet protein and cluster: Q9UKQ9

2 Blocks protein families:
IPB001254 Serine protease
IPB001314 Chymotrypsin serine protease family (S1) signature


UniProtKB/Swiss-Prot: KLK9_HUMAN, Q9UKQ9
Similarity: Belongs to the peptidase S1 family. Kallikrein subfamily
Similarity: Contains 1 peptidase S1 domain


(According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
About This Section

Inhib.
RNA:
    
Browse for Gene Knock-down Tools from Millipore
Browse Nano Scale siRNA at Sigma-Aldrich
Sigma-Aldrich siRNA Panels and siRNA for KLK9
Sigma-Aldrich shRNA for KLK9
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OriGene siRNA: KLK9
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miRNA:Browse microRNA Mimics at Sigma-Aldrich
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QIAGEN Custom miScript Target Protector blocks miRNA-binding site of KLK9 
Search SABiosciences for Assays for microRNAs that regulate KLK9

Gene
Editing:
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Clones:Browse Clones for the Expression of Recombinant Proteins Available from Millipore
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OriGene GFP tagged cDNA clones in CMV expression vector: KLK9
OriGene Myc/DDK tagged cDNA clones in CMV expression vector: KLK9
OriGene untagged cDNA clones in CMV expression vector: KLK9
Browse 3'-UTR reporter clones for miRNA target validation 
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Cell
Lines:
  
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3 Gene Ontology (GO) molecular function terms (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0003824 catalytic activity ----
GO:0004252 serine-type endopeptidase activity NAS11054574
GO:0008233 peptidase activity IEA--
About this table

KLK9 for ontologies           About GeneDecksing


(Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
About This Section

    SABiosciences Custom Pathway-Focused PCR Arrays for KLK9 

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for KLK9

1 Gene Ontology (GO) biological process term (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0006508 proteolysis NAS--
About this table

KLK9 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section
Browse Small Molecules at Sigma-Aldrich
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for KLK9


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Millipore,
siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
About This Section

Inhib.
RNA:
     
Browse for Gene Knock-down Tools from Millipore
Browse Nano Scale siRNA at Sigma-Aldrich
Sigma-Aldrich siRNA Panels and siRNA for KLK9
Sigma-Aldrich shRNA for KLK9
OriGene 29mer shRNA kits in GFP-retroviral vector: KLK9
OriGene shRNA RFP: KLK9
OriGene basic RS shRNA: KLK9
OriGene siRNA: KLK9
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of KLK9 
miRNA: Browse microRNA Mimics at Sigma-Aldrich
Browse microRNA target validation systems at Sigma-Aldrich 
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of KLK9 
Search SABiosciences for Assays for microRNAs that regulate KLK9
Clones: Browse FLAG tag genes at Sigma-Aldrich
OriGene GFP tagged cDNA clones in CMV expression vector: KLK9
OriGene Myc/DDK tagged cDNA clones in CMV expression vector: KLK9
OriGene untagged cDNA clones in CMV expression vector: KLK9
Browse 3'-UTR reporter clones for miRNA target validation 
Browse OriGene MicroRNA Expression Plasmids 
GenScript cDNA clone with any tag delivered in your preferred vector: KLK9 
Primers: OriGene genome-wide validated SYBR primer pairs: KLK9
Browse OriGene validated miRNA SYBR primer pairs 
SABiosciences RT2 qPCR Primer Assay for KLK9: PPH05716A

REFSEQ mRNAs for KLK9 gene: 

NM_012315.1  

Additional cDNA sequence: DQ267419.1 

2 DOTS entries:

DT.121457224  DT.102821852 

24/47 AceView cDNA sequences (see all 47):

AY359036 AB009849 AF095742 BF915088 AB008390 NM_144506 BI041913 NM_012315 
NM_007196 BM762825 BX282429 AY566267 AL551079 NM_144507 BC040887 AY551001 
NM_144505 CR601157 AA343629 AB008927 BF032818 AI963941 BE501242 BF038501 

highest scoring ESTs for KLK9:

AA583908 AY551001 NM_012315 BG003899 DQ267419 AA401047 AA587273 AI470221 AI566249 AI916929 

Unigene Cluster for KLK9:

Kallikrein-related peptidase 9
Hs.448942  [show with all ESTs]
Unigene Representative Sequence: DQ267419


GeneLoc Exon Structure

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000250366(uc002puw.1 uc002pux.1) ENST00000376832(uc002puv.1 uc010eol.1)


(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Primers from OriGene and/or SABiosciences )
About This Section

KLK9 expression in normal and diseased human tissues

1  / 2  / 3

2 probe-sets matching KLK9 gene

Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
233687_s_at2 U133-B 2 0.55 0.86 -- -- -- -- -- -- --
233687_s_at2 U133Plus2 2 0.55 0.86 -- -- -- -- -- -- --
About this table
Data from Genenote  (Publications) and GNF BioGPS
    About these images
KLK9 gene expression
KLK9 gene electronic northern expression
KLK9 gene sage expression
About these images

CGAP SAGE TAG: GAGAACTGAG

SOURCE GeneReport for Unigene cluster: Hs.448942

UniProtKB/Swiss-Prot: KLK9_HUMAN, Q9UKQ9
Tissue specificity: Skin, thymus, trachea, cerebellum and spinal cord

Primers: OriGene genome-wide validated SYBR primer pairs: KLK9
Browse OriGene validated miRNA SYBR primer pairs 
SABiosciences RT2 qPCR Primer Assay for KLK9: PPH05716A
    SABiosciences Custom PCR Arrays for KLK9 


(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for KLK9 gene from 4 species
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
KLK91   -- kallikrein-related peptidase 9 88.4(n)
89.2(a)
484351  XM_541467.2  XP_541467.2 
cow
(Bos taurus)
KLK91   -- kallikrein-related peptidase 9 87.07(n)
88.4(a)
530795  XM_609272.2  XP_609272.2 
rat
(Rattus norvegicus)
Klk91   -- kallikrein related-peptidase 9 79.25(n)
81.93(a)
292851  XM_218647.3  XP_218647.2 
mouse
(Mus musculus)
Klk91 , 5 7 (28.26 cM)5
kallikrein related-peptidase 91, 5 76.84(n)1
77.02(a)1
1015331  NM_028660.21  NP_082936.11 
 AI3240415  AI4147075  (see all 10)
About this table        Species with no ortholog for KLK9

ENSEMBL Gene Tree for KLK9 (if available)

(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
Paralogs for KLK9 gene
KLK132  KLK62  KLK122  KLK22  KLK102  KLK12  KLK152  KLK52  
KLK42  KLK112  KLK72  KLK82  KLK32  

KLK9 for paralogs           About GeneDecksing



(SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section

10/105 NCBI SNPs in KLK9 are shown (see all 105)
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidChr 19 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
----------
rs8857561,2
C,F,O,A,51513415(-) CTTTCT/CCGTGT 1 -- ng5117Minor allele frequency- C:0.04MN NS EA NA WA 1012
rs9521081,2
C,F,A,H,51511930(-) atgaaC/Tgatac 1 -- int199Minor allele frequency- T:0.35NS EA PA EU CA WA NA 4916
rs9521091,2
C,F,A,H,51511870(-) acacaC/Tatagc 1 -- int194Minor allele frequency- T:0.48NS EA PA EU CA WA NA 4648
rs10077551,2
C,F,A,51510768(+) AAGTAG/ATCCTC 1 -- int18Minor allele frequency- A:0.01MN NS EA NA 744
rs17225511,2
--51507955(+) tcagtC/Ttctta 1 -- int10--------
rs17225521,2
--51507957(+) agtctC/Tttaaa 1 -- int10--------
rs18299711,2
C,F,A51511562(-) ggctgT/Gagtgc 1 -- int15Minor allele frequency- G:0.40NA WA 10
rs19866901,2
--51511554(+) gtgccA/Cctgca 1 -- int10--------
rs20669751,2
C,F,A,51512354(-) AGTGCG/AGAGCC 1 -- int18Minor allele frequency- A:0.13EA NS WA 2124
rs20758021,2
C,F,O,A,H,51507020(-) CCTGGA/CCACAT 2 G ref1 syn123Minor allele frequency- G:0.02NS EA NA WA 1282
About this table

HapMap Linkage Disequilibrium images for KLK9 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for KLK9
     1 CNV: 67588

QIAGEN SeqTarget long-range PCR primers for resequencing KLK9 

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
About This Section

KLK9 for disorders           About GeneDecksing

OMIM: 605504

Human Genome Epidemiology (HuGE) Navigator: KLK9 (1 document)

Export disorders and mutations for KLK9 gene to outside databases

(Possibly Related Articles in Doctor's Guide)
About This Section
  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
About This Section

8 PubMed articles for KLK9 gene integrated from 7 sources:
(articles sorted by number of sources associating them with KLK9)
  1. The expanded human kallikrein gene family: locus characterization and molecular cloning of a new member, KLK-L3. (PubMed id 10783266)1, 2, 7 Yousef G.M. and Diamandis E.P. (2000)
  2. A comprehensive nomenclature for serine proteases with homology to tissue kallikreins. (PubMed id 16800724)1, 3 Lundwall A....Yousef G.M. (2006)
  3. Proceedings of the 1st International Symposium on Kallikreins, Lausanne, Switzerland, September 1-3 , 2005. (PubMed id 16800723)1, 3 (2006)
  4. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)1, 2 Grimwood J.... Lucas S.M. (2004)
  5. Sequencing and expression analysis of the serine protease gene cluster located in chromosome 19q13 region. (PubMed id 11054574)1, 2 Gan L.... Wang K. (2000)
  6. Identification of novel human kallikrein-like genes on chromosome 19q13.3-q13.4. (PubMed id 10652563)1, 2 Yousef G.M.... Diamandis E.P. (1999)
  7. Blood biomarker levels to aid discovery of cancer-rel ated single-nucleotide polymorphisms: kallikreins and prostate cancer. (PubMed id 20424135)1 Klein R.J....Lilja H. (2010)
  8. Quantitative expression of the human kallikrein gene 9 (KLK9) in ovarian cancer: a new independent and favorable prognostic marker. (PubMed id 11691797)1 Yousef G.M....Katsaros D. (2001)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
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  Query String
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OMIM
NCBI Bookshelf
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(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 284366 HGNC: 6370 AceView: KLK8andKLK9 Ensembl:ENSG00000213022 euGenes: HUgn284366
ECgene: KLK9 H-InvDB: KLK9

(According to HUGE)
About This Section
  --

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
  --

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from XenneX, Inc.)
About This Section
Patent Information for KLK9 gene:
Search GeneIP for patents involving KLK9

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or Enzo Life Sciences)
About This Section

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 Browse microRNA Target Validation Systems at Sigma-Aldrich Browse CompoZr Knockout ZFN at Sigma-Aldrich
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