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Aliases & Descriptionsfor MECR gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions mitochondrial trans-2-enoyl-CoA reductase1 2 mitochondrial 2-enoyl thioester reductase2 NRBF11 2 5 trans-2-enoyl-CoA reductase, mitochondrial2 CGI-631 2 homolog of yeast 2-enoyl thioester reductase2 FASN2B1 2 nuclear receptor binding factor 12 Nuclear receptor-binding factor 12 3 NBRF13 NRBF-12 3 EC 1.3.1.383 hsNrbf-12 HsNrbf-13
Export aliases for MECR gene to outside databases Previous GC identifers: GC01M029341 GC01M029391 GC01M029519
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Summariesfor MECR gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: MECR_HUMAN, Q9BV79 Function : Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA with chain length from C6 to C16 in anNADPH-dependent manner with preference to medium chain length substrate. May have a role in the mitochondrial synthesis of fatty acids Gene Wiki entry for MECR
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Genomic Viewsfor MECR gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the MECR gene promoter: NF-1 ATF ATF-2 CREB deltaCREB RFX1 GATA-1 c-Jun E47 CUTL1 Other transcription factors Search SABiosciences Chromatin IP Primers for MECR Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for MECR
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1p36.1-p35.1 Ensembl cytogenetic band: 1p35.3 HGNC cytogenetic band: 1pter-p22.3 MECR Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M027771: view genomic region
(about GC identifiers )
Start:
27,771,018 bp from pter
End:
27,808,772 bp from pter
Size:
37,755 bases
Orientation:
minus strand
1 alternative location : Chr 1- 29,519,385-29,557,454
RefSeq DNA sequence: NC_000001.10 NT_004610.19
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Proteinsfor MECR gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: MECR_HUMAN, Q9BV79 (See
protein sequence )Recommended Name: Trans-2-enoyl-CoA reductase, mitochondrial precursor Size : 373 amino acids; 40428 Da
Subunit : Homodimer
Subcellular location : Mitochondrion
Sequence caution : Sequence=AAD34058.1; Type=Frameshift; Positions=14, 19; Sequence=CAI14329.1; Type=Erroneous genemodel prediction;
PDB structure from and Proteopedia : 1ZSY (3D)
 2VCY (3D)
 
Secondary accessions : Q5SYU0 Q5SYU1 Q5SYU2 Q6IBU9 Q9Y373Explore the universe of human proteins at neXtProt for MECR: NX_Q9BV79
REFSEQ proteins (2 alternative transcripts):
NP_001019903.1 NP_057095.2 ENSEMBL proteins: ENSP00000416960 ENSP00000381801 ENSP00000362897 ENSP00000362896 ENSP00000263702 Human Recombinant Proteins 1 Gene Ontology (GO) cellular component term (GO ID links to tree view) :
About this table
MECR for ontologies About GeneDecksing Antibodies for MECR: Assays for MECR:
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Protein
Domains/ Familiesfor MECR gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
MECR for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9BV79 ProtoNet protein and cluster: Q9BV79
1 Blocks protein family : IPB013154 Alcohol dehydrogenase GroES-like UniProtKB/Swiss-Prot: MECR_HUMAN, Q9BV79 Similarity : Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily
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Gene Functionfor MECR gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: MECR_HUMAN, Q9BV79 Function : Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA with chain length from C6 to C16 in anNADPH-dependent manner with preference to medium chain length substrate. May have a role in the mitochondrial synthesis of fatty acids Catalytic activity : Acyl-CoA + NADP(+) = trans-2,3-dehydroacyl-CoA + NADPHBiophysicochemical properties : Kinetic parameters: KM=37 uM for trans-2-hexenoyl-CoA; KM=7.1 uM fortrans-2-decenoyl-CoA; Enzyme Number (IUBMB): EC 1.3.1.38
5 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
About this table
MECR for ontologies About GeneDecksing
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Pathways & Interactionsfor MECR gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section
MECR for pathways About GeneDecksing 1 Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Pathway for MECR 2 Kegg Pathways (Kegg details for MECR) : SABiosciences Custom Pathway-Focused PCR Arrays for MECR Sigma-Aldrich "Your Favorite Gene" (powered by Ingenuity) Molecular Interaction Network for MECR Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MECR 5/6 Interacting proteins for MECR (ENSP00000263702 3 ) via UniProtKB, MINT, and/or STRING (see all 6 )About this table 3 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
About this table
MECR for ontologies About GeneDecksing
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Drugs & Compoundsfor MECR gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
MECR for compounds About GeneDecksing Browse Tocris compounds for MECR 1 Novoseek chemical compound relationship for MECR gene
About this table
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Transcriptsfor MECR gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for MECR gene (2 alternative transcripts): NM_001024732.1 NM_016011.2
Additional cDNA sequence: AF151821.1 AK025830.1 AK095099.1 AK225687.1 AK226084.1 AK300889.1 AK315274.1 BC001419.2 CR456703.1 CR604427.1 CR616740.1 CR624586.1 CR626137.1
18 DOTS entries : DT.452328 DT.91763770 DT.100798959 DT.91763769 DT.100798953 DT.91763771 DT.100798955 DT.95174118
DT.100798958 DT.431671 DT.91763774 DT.91839251 DT.95174117 DT.100798961 DT.121404917 DT.121404940 DT.99927194 DT.100798960 24/182 AceView cDNA sequences (see all 182 ):
BI856447 BM673423 CR604427 CR616740 AI609046 BU735019 AA449215 AU099187 AA962664 CR624586 BM665899 AA393872 CR626137 R47992 AA463768 BM762641 BM849428 AW005319 AI354426 BM981418 BM762525 BM696368 BG677456 BM673220
highest scoring ESTs for MECR :AA150070 AA310756 AA425098 AA449214 AF151821 AK025830 AK095099 AU099187 AV650218 AV650800 Unigene Cluster for MECR:
Mitochondrial trans-2-enoyl-CoA reductase Hs.183646 [show with all ESTs ] Unigene Representative Sequence: NM_001024732 GeneLoc Exon Structure 5/16 Alternative Splicing Database (ASD) splice patterns (SP) for MECR (see all 16 ) ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c · 5d ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b · 8c ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ SP1 :             -   -   -   -   -   -   -   -   -   -   -   -                   SP2 :             -   -   -   -   -   -   -   -   -   -   -                     SP3 :             -   -   -   -   -   -   -   -       -   -                   SP4 :             -   -   -   -       -   -         -                   SP5 :             -   -   -   -   -   -   -   -   -   -   -   -             -      
ExUns: 14 ^ 15a · 15b ^ 16a · 16b · 16c SP1 :   -           SP2 :   -           SP3 :             SP4 :             SP5 :            
About this scheme ECgene alternative splicing isoforms for MECR 18/21 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 21 ): ENST00000475773 ENST00000463412 ENST00000453185 ENST00000490529 ENST00000464511 ENST00000463052 ENST00000489248 ENST00000475861 ENST00000472630 ENST00000474946 ENST00000464915 ENST00000482610 ENST00000484012 ENST00000493928 ENST00000398820 ENST00000373792 (uc001brq.1 uc001brr.1 uc010ofz.1 ) ENST00000473030 ENST00000373791 (uc001brp.1 uc001brs.1 uc001brt.1 )
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Expression for MECR gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section MECR expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching MECR gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
49341_at2 , 3
U95-B
1
1.00
1.00
1.00
1.00
R77016
0.80
1.00
0.91
1
218664_at2 , 3
U133-A
1
0.91
1.00
--
--
NM_016011
0.60
1.00
0.82
1
218664_at2
U133Plus2
1
0.91
1.00
--
--
--
--
--
--
--
About this table
MECR for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GGAGGGGAGG SOURCE GeneReport for Unigene cluster: Hs.183646 UniProtKB/Swiss-Prot: MECR_HUMAN, Q9BV79 Tissue specificity : Highly expressed in skeletal and heart muscle. Expressed at lower level in placenta, liver, kidneyand pancreas. Weakly or not expressed in lung
SABiosciences Custom PCR Arrays for MECR
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Orthologsfor MECR gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for MECR gene from 5/19 species (see all 19 )
About this table Species with no ortholog for MECR ENSEMBL Gene Tree for MECR (if available)
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Paralogsfor MECR gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section --
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Genomic Variantsfor MECR gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 1 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for MECR (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for MECR: --
QIAGEN SeqTarget long-range PCR primers for resequencing MECR
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Disorders & Mutationsfor MECR gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
MECR for disorders About GeneDecksing
OMIM: 608205 Human Genome Epidemiology (HuGE) Navigator: MECR (1 document)Export disorders and mutations for MECR gene to outside databases
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Medical Newsfor MECR gene (Possibly Related Articles in
Doctor's Guide )
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Publicationsfor MECR gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/17 PubMed articles for MECR gene, integrated from 7 sources (see all 17 ): (articles sorted by number of sources associating them with MECR) Characterization of 2-enoyl thioester reductase from mammals: an ortholog of Ybr026p/Mrf1'p of the yeast mitochondrial fatty acid synthesis type II. (PubMed id 12654921) 1 , 2 , 3, 7 Miinalainen I.J.... Hiltunen J.K. (2003) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 1 , 2 Gregory S.G.... Bentley D.R. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PubMed id 10810093) 1 , 2 Lai C.H....Lin W. (2000) Nuclear receptor binding factor-1 (NRBF-1), a protein interacting with a wide spectrum of nuclear hormone receptors. (PubMed id 9795230) 1 , 3 Masuda N....Osumi T. (1998) Structural enzymological studies of 2-enoyl thioester reductase of the human mitochondrial FAS II pathway: new insights into its substrate recognition properties. (PubMed id 18479707) 1 , 7 Chen Z.J....Haapalainen A.M. (2008) Genetic variants in nuclear-encoded mitochondrial gen es influence AIDS progression. (PubMed id 20877624) 1 Hendrickson S.L....O'Brien S.J. (2010) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 Ota T.... Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Construction and characterization of a full length-enriched and a 5'- end-enriched cDNA library. (PubMed id 9373149) 1 Suzuki Y.... Sugano S. (1997)
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External Searches for MECR gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing MECR gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing MECR gene
(According to HUGE )
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Specialized Databases showing MECR gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for MECR gene: Search GeneIP for patents involving MECR GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor MECR gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for MECR
Recombinant Protein for MECR
ELISAs and CLIAs for MECR
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