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MT1X Gene

protein-coding   GIFtS: 51

GC16P042585
metallothionein 1X
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: MT1)
Products    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases & Descriptions
metallothionein 1X1 2     MT12
MT-1l1 2     metallothionein-1X2
MT-IX2 3     metallothionein-IX2
MT-1X2 3     Metallothionein-IX3

External Ids:    HGNC: 74051   Entrez Gene: 45012   Ensembl: ENSG000001871937   UniProtKB: P802973   

Export aliases for MT1X gene to outside databases

Previous GC identifers: GC16U990045 GC16P056428 GC16P056486 GC16P056487 GC16P055267 GC16P055273 GC16P056711


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: MT1X_HUMAN, P80297
Function: Metallothioneins have a high content of cysteine residues that bind various heavy metals; these proteins are
transcriptionally regulated by both heavy metals and glucocorticoids

Gene Wiki entry for MT1X

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the MT1X gene promoter:
         Sp1   TBP   USF1   NF-kappaB1   NF-kappaB   c-Myb   LUN-1   MEF-2A   GATA-2   GATA-3   
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for MT1X

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16q13   Ensembl cytogenetic band:  16q13   HGNC cytogenetic band: 16q13

MT1X Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MT1X gene location

GeneLoc gene densities for chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16P042585:  view genomic region     (about GC identifiers)

Start:
42,585,539 bp from pter
End:
42,587,264 bp from pter
Size:
1,726 bases
Orientation:
plus strand

1 alternative location:
Chr16+ 56,710,102-56,718,108     
RefSeq DNA sequence:
NC_000016.9  NT_010498.15  

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
About This Section

UniProtKB/Swiss-Prot: MT1X_HUMAN, P80297 (See protein sequence)
Recommended Name: Metallothionein-1X  
Size: 61 amino acids; 6068 Da
Subunit: Monomer
Secondary accessions: A8MUC7

Explore the universe of human proteins at neXtProt for MT1X: NX_P80297 

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_005943.1  

    ENSEMBL proteins: 
    ENSP00000290704 ENSP00000377995 ENSP00000378000 


    Human Recombinant Proteins 
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    Uscn ELISAs and CLIAs for MT1X 


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    MT1X for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR000006 Metallothionein_vert
     IPR018064 Metallothionein_vert_metal_BS
     IPR003019 Metallothionein_sfam_euk
     IPR017854 Metallothionein_sfam

    Graphical View of Domain Structure for InterPro Entry P80297

    ProtoNet protein and cluster: P80297

    1 Blocks protein family: IPB002400 Growth factor cystine knot superfamily signature

    UniProtKB/Swiss-Prot: MT1X_HUMAN, P80297
    Domain: Class I metallothioneins contain 2 metal-binding domains: four divalent ions are chelated within cluster A of
    the alpha domain and are coordinated via cysteinyl thiolate bridges to 11 cysteine ligands. Cluster B, the
    corresponding region within the beta domain, can ligate three divalent ions to 9 cysteines
    Similarity: Belongs to the metallothionein superfamily. Type 1 family


    (According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
    About This Section

    UniProtKB/Swiss-Prot: MT1X_HUMAN, P80297
    Function: Metallothioneins have a high content of cysteine residues that bind various heavy metals; these proteins are
    transcriptionally regulated by both heavy metals and glucocorticoids

    Inhib.
    RNA:
        
    Browse for Gene Knock-down Tools from Millipore
    Browse Nano Scale siRNA at Sigma-Aldrich
    Sigma-Aldrich siRNA for MT1X
    Sigma-Aldrich shRNA for MT1X
    OriGene 29mer shRNA kits in GFP-retroviral vector (see all 3): MT1X
    OriGene shRNA RFP (see all 3): MT1X
    OriGene basic RS shRNA (see all 3): MT1X
    OriGene siRNA (see all 3): MT1X
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of MT1X 
    miRNA:Sigma-Aldrich microRNA Mimics for MT1X
    Browse microRNA target validation systems at Sigma-Aldrich 
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of MT1X 
    Search SABiosciences for Assays for microRNAs that regulate MT1X

    Gene
    Editing:
    Browse CompoZr Knockout ZFN at Sigma-Aldrich 

    Clones:Browse Clones for the Expression of Recombinant Proteins Available from Millipore
    Browse iPSC Reprogramming Factors at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector: MT1X
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector: MT1X
    OriGene untagged cDNA clones in CMV expression vector: MT1X
    OriGene 3'-UTR clone: MT1X 
    Browse MicroRNA Expression Plasmids 
    GenScript Custom cDNA clone Services for MT1X 
    Browse Sino Biological Human cDNA Clones

    Cell
    Lines:
      
    GenScript Custom overexpressing Cell Line Services for MT1X 

    Genatlas biochemistry entry for MT1X:
    metallothionein 1X cluster

    2 Gene Ontology (GO) molecular function terms (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004872 receptor activity ----
    GO:0046872 metal ion binding IEA--
    About this table

    MT1X for ontologies           About GeneDecksing


    (Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
    About This Section

        SABiosciences Custom Pathway-Focused PCR Arrays for MT1X 

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for MT1X

    1 Gene Ontology (GO) biological process term (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0010038 response to metal ion TAS9074634
    About this table

    MT1X for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    MT1X for compounds           About GeneDecksing

    Browse Small Molecules at Sigma-Aldrich
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for MT1X
    5 Novoseek chemical compound relationships for MT1X gene
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    cadmium 65.7 5 18755257 (1), 20054154 (1), 8049263 (1), 16827180 (1) (see all 5)
    glyceraldehyde 3-phosphate 46.8 2 9831543 (1), 15952643 (1)
    zinc 26.4 3 17468938 (1), 10774930 (1), 10940647 (1)
    estrogen 21.1 2 17982697 (1), 16774941 (1)
    copper 8.54 1 9831543 (1)
    About this table



    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Millipore,
    siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
    Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
    About This Section

    Inhib.
    RNA:
         
    Browse for Gene Knock-down Tools from Millipore
    Browse Nano Scale siRNA at Sigma-Aldrich
    Sigma-Aldrich siRNA for MT1X
    Sigma-Aldrich shRNA for MT1X
    OriGene 29mer shRNA kits in GFP-retroviral vector (see all 3): MT1X
    OriGene shRNA RFP (see all 3): MT1X
    OriGene basic RS shRNA (see all 3): MT1X
    OriGene siRNA (see all 3): MT1X
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of MT1X 
    miRNA: Sigma-Aldrich microRNA Mimics for MT1X
    Browse microRNA target validation systems at Sigma-Aldrich 
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of MT1X 
    Search SABiosciences for Assays for microRNAs that regulate MT1X
    Clones: Browse FLAG tag genes at Sigma-Aldrich
    OriGene GFP tagged cDNA clones in CMV expression vector: MT1X
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector: MT1X
    OriGene untagged cDNA clones in CMV expression vector: MT1X
    OriGene 3'-UTR Clone: MT1X 
    Browse OriGene MicroRNA Expression Plasmids 
    GenScript Custom cDNA clone Services for MT1X 
    Primers: OriGene genome-wide validated SYBR primer pairs: MT1X
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for MT1X: PPH01533A

    REFSEQ mRNAs for MT1X gene: 

    NM_005952.3  

    Additional cDNA sequence: 

    AK311284.1 BC018190.1 BC032131.2 BC032338.1 BC053882.1 X76717.1 

    20 DOTS entries:

    DT.95091421  DT.100042494  DT.120684898  DT.85103340  DT.120684893  DT.120684786  DT.120684973  DT.99977794 
    DT.120684791  DT.120684884  DT.85101063  DT.100881113  DT.120684781  DT.95190528  DT.95190553  DT.100893285 
    DT.120684906  DT.120684982  DT.218152  DT.92387499 

    24/139 AceView cDNA sequences (see all 139):

    T27991 F30567 F27787 T29525 BI821822 AJ712480 F26333 AI341945 
    CD672936 F30476 F25557 CD675632 S68956 CB529368 BX113499 NM_005946 
    BM925369 BQ067382 BM920880 NM_005949 BI768538 CD370351 BM971924 BC032131 

    highest scoring ESTs for MT1X:

    AA171741 AA224832 AA367216 AA468046 AA468082 AA506043 AA657894 AI560502 AI564853 AI582028 

    Unigene Cluster for MT1X:

    Metallothionein 1X
    Hs.374950  [show with all ESTs]
    Unigene Representative Sequence: BC053882


    GeneLoc Exon Structure

    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000290704 ENST00000394485(uc002ejy.2 uc002ejz.2) ENST00000394490(uc010ccj.1 uc010vhg.1 uc010vhh.1 uc010ccl.2)


    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Primers from OriGene and/or SABiosciences )
    About This Section

    MT1X expression in normal and diseased human tissues

    1  / 2  / 3

    5 probe-sets matching MT1X gene

    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    39120_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 AA224832 0.60 1.00 0.82 1
    204326_x_at2, 3 U133-A 12 1.00 0.84 -- -- NM_002450 0.20 1.00 0.72 1
    208581_x_at2, 3 U133-A 14 1.00 0.61 -- -- NM_005952 0.60 0.75 0.68 1
    204326_x_at2 U133Plus2 12 1.00 0.84 -- -- -- -- -- -- --
    208581_x_at2 U133Plus2 14 1.00 0.61 -- -- -- -- -- -- --
    About this table

    MT1X for expression           About GeneDecksing

    Data from Genenote  (Publications) and GNF BioGPS
        About these images
    MT1X gene expression
    MT1X gene electronic northern expression
    MT1X gene sage expression
    About these images

    CGAP SAGE TAG: CCATCCTGAA

    SOURCE GeneReport for Unigene cluster: Hs.374950

    Expression variation in blood from EXPOLDB for MT1X

    Primers: OriGene genome-wide validated SYBR primer pairs: MT1X
    Browse OriGene validated miRNA SYBR primer pairs 
    SABiosciences RT2 qPCR Primer Assay for MT1X: PPH01533A
        SABiosciences Custom PCR Arrays for MT1X 


    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section

    Orthologs for MT1X gene from 1 species
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    chimpanzee
    (Pan troglodytes)
    MT1X1   -- metallothionein 1X 100(n)
    100(a)
    736020  XM_001139179.1  XP_001139179.1 
    About this table        Species with no ortholog for MT1X

    ENSEMBL Gene Tree for MT1X (if available)

    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section
    Paralogs for MT1X gene
    MT1G2  

    MT1X for paralogs           About GeneDecksing


    Pseudogenes
    1 related pseudogene



    (SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
    About This Section

    10/67 NCBI SNPs in MT1X are shown (see all 67)
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidChr 16 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ----------
    rs11407451,2
    --56718026(+) TTTTTC/TTTTTT 1 -- ut310--------
    rs11407461,2
    --56718063(+) ACATCC/TTTTTT 1 -- ut310--------
    rs15999331,2
    C,F,A,56715862(-) CACAGT/GGCTCT 1 -- ng5112Minor allele frequency- G:0.39NS EA NA WA 632
    rs18272061,2
    C,F,56714747(-) TGGGTC/TCTCAC 1 -- ng511Minor allele frequency- T:0.10WA 50
    rs23012321,2
    C,56716797(+) TGCCTT/CTTCGG 1 -- int13Minor allele frequency- C:0.34NA 76
    rs23012331,2
    C,F,56716798(+) GCCTCA/C/TTCGGA 1 -- int18NS EA NA WA 538
    rs23012341,2
    C,F,A,H,56716982(+) GTCCTG/TCAGCA 1 -- int123Minor allele frequency- T:0.33NS EA NA WA 2634
    rs38279511,2
    C,F,56715797(-) GGTCCT/CCCTTT 1 -- ng51 tfbs36Minor allele frequency- C:0.10NS EA WA 556
    rs38425211,2
    --56716156(-) CTGCC-/TTTCC 
            
    CAATT
    1 -- ng510--------
    rs38425221,2
    C56716070(-) CCCCC-/CGCTCC 1 -- ng51 tfbs30--------
    About this table

    HapMap Linkage Disequilibrium images for MT1X (up to first 250kb)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for MT1X: --

    QIAGEN SeqTarget long-range PCR primers for resequencing MT1X 

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    MT1X for disorders           About GeneDecksing

    OMIM: 156359

    4 Novoseek disease relationships for MT1X gene

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    prostate cancer 34.2 4 10754528 (4)
    breast cancer 22.6 3 11756227 (1), 15788722 (1), 10940647 (1)
    bladder cancer 21.5 4 11270423 (4)
    tumors 3.27 2 18755257 (1), 11270423 (1)
    About this table

    Human Genome Epidemiology (HuGE) Navigator: MT1X (2 documents)

    Export disorders and mutations for MT1X gene to outside databases

    (Possibly Related Articles in Doctor's Guide)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
    About This Section

    10/47 PubMed articles for MT1X gene, integrated from 7 sources (see all 47):
    (articles sorted by number of sources associating them with MT1X)
    1. Characterisation of six additional human metallothionein genes. (PubMed id 8049263)1, 2, 3, 7 Stennard F.A....West A.K. (1994)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Induction by zinc of specific metallothionein isoforms in human monocytes. (PubMed id 8119276)1, 2 Pauwels M.... Ley M. (1994)
    4. Human metallothionein genes: structure of the functional locus at 16q13. (PubMed id 2286373)1, 3 West A.K....Richards R.I. (1990)
    5. Metallothionein isoform 1 and 2 gene expression in the human prostate: downregulation of MT-1X in advanced prostate cancer. (PubMed id 10754528)1, 7 Garrett S.H....Sens D.A. (2000)
    6. Acute exposure to arsenite induces metallothionein isoform-specific gene expression in human proximal tubule cells. (PubMed id 11693492)1, 7 Garrett S.H....Sens D.A. (2001)
    7. [Cilostazol induces metallothionein expression in vas cular cells] (PubMed id 19881214)1, 7 Fujiwara Y....Satoh M. (2009)
    8. Metallothionein isogene transcription in red blood cell precursors from human cord blood. (PubMed id 11168427)1, 7 Rahman M.T. and De Ley M. (2001)
    9. Metallothionein isoform gene expression in zinc-treated human peripheral blood lymphocytes. (PubMed id 10774930)1, 7 Vandeghinste N....De Ley M. (2000)
    10. Differential expression of human metallothionein isoform I mRNA in human proximal tubule cells exposed to metals. (PubMed id 9831543)1, 7 Garrett S.H....Sens D.A. (1998)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 4501 HGNC: 7405 AceView: MT1_ Ensembl:ENSG00000187193 euGenes: HUgn4501
    ECgene: MT1X H-InvDB: MT1X

    (According to HUGE)
    About This Section
      --

    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
      --

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from XenneX, Inc.)
    About This Section
    Patent Information for MT1X gene:
    Search GeneIP for patents involving MT1X

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
    Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or Enzo Life Sciences)
    About This Section

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     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of MT1X
     SeqTarget long-range PCR primers for resequencing MT1X
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    GeneCards Homepage - Last full update: 30 Dec 2010 - Incremental updates: 10 Jan 2011 , 10 Jan 2011

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