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Aliases & Descriptionsfor MTIF2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions mitochondrial translational initiation factor 21 2 OTTHUMP000002007732 IF-2mt1 2 translation initiation factor IF-2, mitochondrial2 IF-2(Mt)2 3 IF-2Mt3 IF2(mt)2 3
Export aliases for MTIF2 gene to outside databases Previous GC identifers: GC02M055501 GC02M055649 GC02M055438 GC02M055375 GC02M055317 GC02M055463
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Summariesfor MTIF2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for MTIF2 : During the initiation of protein biosynthesis, initiation factor-2 (IF-2) promotes the binding of the initiator tRNA to the small subunit of the ribosome in a GTP-dependent manner. Prokaryotic IF-2 is a single polypeptide, while eukaryotic cytoplasmic IF-2 (eIF-2) is a trimeric protein. Bovine liver mitochondria contain IF-2(mt), an 85-kD monomeric protein that is equivalent to prokaryotic IF-2. The predicted 727-amino acid human protein contains a 29-amino acid presequence. Human IF-2(mt) shares 32 to 38% amino acid sequence identity with yeast IF-2(mt) and several prokaryotic IF-2s, with the greatest degree of conservation in the G domains of the proteins. Two transcript variants encoding the same protein have been found for this gene. (provided by RefSeq) UniProtKB/Swiss-Prot: IF2M_HUMAN, P46199 Function : One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA fromspontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex Gene Wiki entry for MTIF2
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Genomic Viewsfor MTIF2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the MTIF2 gene promoter: Cart-1 Elk-1 POU3F2 (N-Oct-5a) POU3F2 (N-Oct-5b) POU3F2 HNF-1A CUTL1 Sox9 MEF-2A SRF Other transcription factors Search SABiosciences Chromatin IP Primers for MTIF2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for MTIF2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 2p16.1 Ensembl cytogenetic band: 2p16.1 HGNC cytogenetic band: 2p16.1 MTIF2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02M055198: view genomic region
(about GC identifiers )
Start:
55,198,510 bp from pter
End:
55,231,124 bp from pter
Size:
32,615 bases
Orientation:
minus strand
1 alternative location : Chr 2- 55,463,731-55,496,483
RefSeq DNA sequence: NC_000002.11 NT_022184.15
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Proteinsfor MTIF2 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: IF2M_HUMAN, P46199 (See
protein sequence )Recommended Name: Translation initiation factor IF-2, mitochondrial precursor Size : 727 amino acids; 81317 Da
Subunit : Monomer
Subcellular location : MitochondrionExplore the universe of human proteins at neXtProt for MTIF2: NX_P46199 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001005369.1 NP_002444.2 ENSEMBL proteins: ENSP00000393025 ENSP00000400778 ENSP00000416057 ENSP00000388640 ENSP00000399531 ENSP00000383880 ENSP00000403492 ENSP00000403237 ENSP00000378099 ENSP00000384481 ENSP00000393337 ENSP00000263629 Human Recombinant Proteins 2 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005622 intracellular
IEA -- GO:0005739 mitochondrion
ISS --
About this table
MTIF2 for ontologies About GeneDecksing Antibodies for MTIF2: Assays for MTIF2:
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Protein
Domains/ Familiesfor MTIF2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
MTIF2 for domains About GeneDecksing 5/7 InterPro domains/families (see all 7 ):
Graphical View of Domain Structure for InterPro Entry P46199 ProtoNet protein and cluster: P46199
UniProtKB/Swiss-Prot: IF2M_HUMAN, P46199 Similarity : Belongs to the IF-2 family
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Gene Functionfor MTIF2 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: IF2M_HUMAN, P46199 Function : One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA fromspontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
Genatlas biochemistry entry for MTIF2 :mitochondrial translational initiation factor 2,catalyzing the binding of initiation tRNA to mitochondrial 28S ribosomes 5/6 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 6 ):
GO ID Qualified GO term Evidence PubMed IDs GO:0000166 nucleotide binding
IEA -- GO:0003743 translation initiation factor activity
IEA -- GO:0003924 GTPase activity
IEA -- GO:0005525 GTP binding
IEA -- GO:0008135 translation factor activity, nucleic acid binding
ISS --
About this table
MTIF2 for ontologies About GeneDecksing
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Pathways & Interactionsfor MTIF2 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for MTIF2 Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MTIF2 1 Interacting protein for MTIF2 (P46199 2 ) via UniProtKB, MINT, and/or STRING About this table 3 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006413 translational initiation
-- -- GO:0006446 regulation of translational initiation
ISS -- GO:0007264 small GTPase mediated signal transduction
-- --
About this table
MTIF2 for ontologies About GeneDecksing
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Drugs & Compoundsfor MTIF2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section
MTIF2 for compounds About GeneDecksing Browse Tocris compounds for MTIF2 7 Novoseek chemical compound relationships for MTIF2 gene
About this table
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Transcriptsfor MTIF2 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for MTIF2 gene (2 alternative transcripts): NM_001005369.1 NM_002453.2
Additional cDNA sequence: AF494407.1 AK225184.1 AK307993.1 BC002667.2 BC009845.2 BC017243.1 BC039848.1 BC054048.1 BC064977.1 BC067352.1 BC082973.1 BC143541.1 L34600.1
15 DOTS entries : DT.316190 DT.92005944 DT.92435754 DT.100036537 DT.95070852 DT.100036542 DT.100785719 DT.100785721
DT.100785722 DT.40106472 DT.95342069 DT.120977217 DT.120977225 DT.99939771 DT.100036540 24/212 AceView cDNA sequences (see all 212 ):
F11408 AA459016 F04295 BU633170 T09028 BM766250 BQ883227 BU753417 W76546 BM888464 BM772446 BG623953 CA418093 BM773385 AI347617 BM541285 CB120990 AA427852 AA804327 AA164431 F08059 BU681583 BU684812 BQ774933
highest scoring ESTs for MTIF2 :L34600 AA360846 AF494407 AU129148 AU137851 AU139983 BC002667 BC009845 BC017243 BC039848 Unigene Cluster for MTIF2:
Mitochondrial translational initiation factor 2 Hs.149894 [show with all ESTs ] Unigene Representative Sequence: NM_001005369 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for MTIF2 (see all 6 ) ExUns: 1 ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 SP1 :   -     -                               SP2 :                                     SP3 :       -                               SP4 :               -   -                     SP5 :                                    
About this scheme ECgene alternative splicing isoforms for MTIF2 12 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000412530 ENST00000446660 ENST00000420637 ENST00000441307 ENST00000417363 ENST00000404297 ENST00000418823 ENST00000417741 ENST00000394600 ENST00000403721 (uc010yox.1 )ENST00000366137 ENST00000263629 (uc002ryn.2 uc002ryo.2 uc002ryp.1 )
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Expression for MTIF2 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section MTIF2 expression in normal and diseased human tissues 1 / 2 / 3
3 probe-sets matching MTIF2 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
31836_at2 , 3
U95-A
2
0.94
0.93
1.00
1.00
L34600
1.00
1.00
1.00
1
203095_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_002453
0.60
1.00
0.82
1
203095_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
About this table
MTIF2 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TAATTTGGAA SOURCE GeneReport for Unigene cluster: Hs.149894 Expression variation in blood from EXPOLDB for MTIF2
UniProtKB/Swiss-Prot: IF2M_HUMAN, P46199 Tissue specificity : Expressed in all tissues examined. Highest level in skeletal muscle
SABiosciences Custom PCR Arrays for MTIF2
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Orthologsfor MTIF2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for MTIF2 gene from 5/20 species (see all 20 )
About this table Species with no ortholog for MTIF2 ENSEMBL Gene Tree for MTIF2 (if available)
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Paralogsfor MTIF2 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Pseudogenes 1 related pseudogene
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Genomic Variantsfor MTIF2 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 2 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for MTIF2 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for MTIF2: --
QIAGEN SeqTarget long-range PCR primers for resequencing MTIF2
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Disorders & Mutationsfor MTIF2 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
MTIF2 for disorders About GeneDecksing
OMIM: 603766 1 Novoseek disease relationship for MTIF2 gene
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
tumors
0
1
10651023 (1)
About this table Human Genome Epidemiology (HuGE) Navigator: MTIF2 (3 documents) Export disorders and mutations for MTIF2 gene to outside databases
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Medical Newsfor MTIF2 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor MTIF2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/44 PubMed articles for MTIF2 gene, integrated from 7 sources (see all 44 ): (articles sorted by number of sources associating them with MTIF2) Cloning and sequence analysis of the human mitochondrial translational initiation factor 2 cDNA. (PubMed id 7829522) 1 , 2 , 3, 7 Ma L. and Spremulli L.L. (1995) The human mitochondrial translation initiation factor 2 gene (MTIF2): transcriptional analysis and identification of a pseudogene. (PubMed id 12932832) 1 , 2 Overman R.G. Jr....Farwell M.A. (2003) Assignment1 of the mitochondrial translational initiation factor 2 gene (MTIF2) to human chromosome 2 bands p16-->p14 by in situ hybridization and with somatic cell hybrids. (PubMed id 9925935) 1 , 3 Bonner D.S....Farwell M.A. (1998) Evidence for genes on chromosome 2 contributing to al cohol dependence with conduct disorder and suicide attempts. (PubMed id 20468071) 1 Dick D.M....Bierut L. (2010) Genetic variants in nuclear-encoded mitochondrial gen es influence AIDS progression. (PubMed id 20877624) 1 Hendrickson S.L....O'Brien S.J. (2010) Genetic association analysis of 13 nuclear-encoded mitochondrial candidate genes with type II diabetes mellitus: the DAMAGE study. (PubMed id 19209188) 1 Reiling E....Dekker J.M. (2009) Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348) 1 Barbe L....Andersson-Svahn H. (2008) The balance between protein synthesis and degradation in chloroplasts determines leaf variegation in Arabidopsis yellow variegated mutants. (PubMed id 17416734) 1 Miura E....Sakamoto W. (2007) Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621) 2 Hillier L.W....Wilson R.K. (2005) Identification of NPM-ALK interacting proteins by tandem mass spectrometry. (PubMed id 14968112) 1 Crockett D.K....Lim M.S. (2004)
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External Searches for MTIF2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing MTIF2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing MTIF2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing MTIF2 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for MTIF2 gene: Search GeneIP for patents involving MTIF2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor MTIF2 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
Enzo Life Sciences )About This Section
Search Tocris compounds for MTIF2
ELISAs and CLIAs for MTIF2
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