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Aliases & Descriptionsfor NEK9 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section Aliases & Descriptions NIMA (never in mitosis gene a)- related kinase 91 2 Never in mitosis A-related kinase 92 3 NERCC1 2 3 NERCC12 5 Nek81 2 3 MGC1383062 DKFZp434D09351 2 NIMA-related kinase Nek82 MGC167141 2 serine/threonine-protein kinase Nek92 NimA-related kinase 82 3 KIAA19953 NimA-related protein kinase 92 3 NEK83 Nercc1 kinase2 3 EC 2.7.11.13
Export aliases for NEK9 gene to outside databases Previous GC identifers: GC14M073077 GC14M069365 GC14M073538 GC14M073541 GC14M074618 GC14M075548
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Summariesfor NEK9 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: NEK9_HUMAN, Q8TD19 Function : Pleiotropic regulator of mitotic progression, participating in the control of spindle dynamics and chromosomeseparation. Phosphorylates different histones, myelin basic protein, beta-casein, and BICD2. Phosphorylates histone H3 on serine and threonine residues and beta-casein on serine residues. Important for G1/S transition and S phase progression Gene Wiki entry for NEK9
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Genomic Viewsfor NEK9 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 60) ,
Regulatory elements and Epigenetics data according to
Qiagen and/or
SABiosciences )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the NEK9 gene promoter: c-Myb MRF-2 Bach1 FOXD1 SRY ER-alpha PPAR-gamma2 PPAR-gamma1 RORalpha1 COUP-TF1 Other transcription factors Search SABiosciences Chromatin IP Primers for NEK9 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for NEK9
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 14q24.3 Ensembl cytogenetic band: 14q24.3 HGNC cytogenetic band: 14q24.2 NEK9 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 14 GeneLoc Exon Structure
GeneLoc location for GC14M055716: view genomic region
(about GC identifiers )
Start:
55,716,982 bp from pter
End:
55,761,929 bp from pter
Size:
44,948 bases
Orientation:
minus strand
1 alternative location : Chr 14- 75,548,819-75,593,778
RefSeq DNA sequence: NC_000014.8 NT_026437.12
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Proteinsfor NEK9 gene
(According to
1 UniProtKB ,
neXtProt ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological , and/or
ProSpec ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Dec 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
About This Section UniProtKB/Swiss-Prot: NEK9_HUMAN, Q8TD19 (See
protein sequence )Recommended Name: Serine/threonine-protein kinase Nek9 Size : 979 amino acids; 107168 Da
Cofactor : Magnesium
Subunit : Homodimer. Binds to Ran GTPase. Has a greater affinity for Ran-GDP over Ran-GTP. Interacts with NEK6, NEK7 andBICD2. Interacts with SSRP1 and SUPT16H, the 2 subunits of the FACT complex
Subcellular location : Cytoplasm. Nucleus
Developmental stage : Expression varied mildly across the cell cycle, with highest expression observed in G1 andstationary-phase cells
Sequence caution : Sequence=AAD31936.1; Type=Erroneous gene model prediction; Sequence=BAC02704.1; Type=Erroneousinitiation; Note=Translation N-terminally shortened;
Secondary accessions : Q52LK6 Q8NCN0 Q8TCY4 Q9UPI4 Q9Y6S4 Q9Y6S5 Q9Y6S6Explore the universe of human proteins at neXtProt for NEK9: NX_Q8TD19 Post-translational modifications:
Autophosphorylated on serine and threonine residues. When complexed with FACT, exhibits markedly elevated phosphorylation on Thr-210. During mitosis, not phosphorylated on Thr-210. Phosphorylated by CDK1 in vitro1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_149107.4 ENSEMBL proteins: ENSP00000238616 Human Recombinant Proteins 3 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
NEK9 for ontologies About GeneDecksing Antibodies for NEK9: Assays for NEK9:
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Protein
Domains/ Familiesfor NEK9 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
NEK9 for domains About GeneDecksing 5/7 InterPro domains/families (see all 7 ):
Graphical View of Domain Structure for InterPro Entry Q8TD19 ProtoNet protein and cluster: Q8TD19
UniProtKB/Swiss-Prot: NEK9_HUMAN, Q8TD19 Domain : Dimerizes through its coiled-coil domainSimilarity : Belongs to the protein kinase superfamily. NEK Ser/Thr protein kinase family. NIMA subfamilySimilarity : Contains 1 protein kinase domainSimilarity : Contains 6 RCC1 repeats
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Gene Functionfor NEK9 gene
(According to UniProtKB ,
IUBMB ,and/or
Genatlas , Animal models from MGI Dec 24 2010,
shRNA from
OriGene ,
Sigma-Aldrich ,
RNAi from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Clones from Millipore ,
Sigma-Aldrich ,
OriGene ,
GenScript ,
Sino Biological ,
Cell Lines from GenScript ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene .)
About This Section UniProtKB/Swiss-Prot: NEK9_HUMAN, Q8TD19 Function : Pleiotropic regulator of mitotic progression, participating in the control of spindle dynamics and chromosomeseparation. Phosphorylates different histones, myelin basic protein, beta-casein, and BICD2. Phosphorylates histone H3 on serine and threonine residues and beta-casein on serine residues. Important for G1/S transition and S phase progression Catalytic activity : ATP + a protein = ADP + a phosphoproteinEnzyme regulation : Activated during mitosis by intramolecular autophosphorylation. Activity and autophosphorylation isactivated by manganese >> magnesium ions. Sensitive to increasing concentration of detergents. It is not cell-cycle regulated but activity is higher in G0-arrested cells Enzyme Number (IUBMB): EC 2.7.11.1
5/8 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 8 ):
About this table
NEK9 for ontologies About GeneDecksing
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Pathways & Interactionsfor NEK9 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
PCR Arrays from
SABiosciences ,
Proteins Network according to
SABiosciences ,
Sigma-Aldrich ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Dec 2010 via
Entrez Gene) .
About This Section SABiosciences Custom Pathway-Focused PCR Arrays for NEK9 SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for NEK9 3 Interacting proteins for NEK9 (Q8TD19 1 , 2 ENSP00000238616 3 ) via UniProtKB, MINT, and/or STRING About this table 4 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
About this table
NEK9 for ontologies About GeneDecksing
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Drugs & Compoundsfor NEK9 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
About This Section Browse Tocris compounds for NEK9
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Transcriptsfor NEK9 gene (GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 228 Homo sapiens; Dec 8 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore ,
siRNAs from
Sigma-Aldrich ,
OriGene ,
Qiagen ,
Super-pooled esiRNAs from Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from Sigma-Aldrich ,
Qiagen ,
SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Sigma-Aldrich ,
GenScript ,
Primers from
OriGene and/or
SABiosciences )About This Section REFSEQ mRNAs for NEK9 gene: NM_033116.4
Additional cDNA sequence: AB082526.1 AK128693.1 AL117502.1 AL832633.2 AL833036.1 AY048580.1 AY080896.1 BC001714.1 BC009336.2 BC062742.1 BC093881.1 BC112101.1 CR612206.1 L40402.1
17 DOTS entries : DT.100795741 DT.97800508 DT.219045 DT.40107140 DT.120791357 DT.91756610 DT.91638460 DT.100029539
DT.100795744 DT.100795742 DT.102822232 DT.40126940 DT.95177241 DT.95310804 DT.99959625 DT.120791347 DT.120791516 11 AceView cDNA sequences :
AI884951 BE327500 AI859026 AA827006 AI950160 AI972045 AI199074 AW339836 AW195739 AA625810 AA528182
highest scoring ESTs for NEK9 :AB082526 AI077817 AI298668 AI799812 AI961740 AW016183 AW578773 AW578778 AY048580 AY080896 Unigene Cluster for NEK9:
NIMA (never in mitosis gene a)- related kinase 9 Hs.728169 [show with all ESTs ] Unigene Representative Sequence: NM_033116 GeneLoc Exon Structure 5/10 Alternative Splicing Database (ASD) splice patterns (SP) for NEK9 (see all 10 ) ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14 ^ 15 ^ 16 ^ 17a · 17b ^ SP1 :               -                           -             SP2 :         -       -                                       SP3 :           -     -                                       SP4 :                                                     SP5 :                                                    
ExUns: 18a · 18b ^ 19 ^ 20a · 20b · 20c ^ 21 ^ 22 ^ 23 ^ 24a · 24b SP1 :   -     -           -       SP2 :                       SP3 :                       SP4 :                 -       SP5 :                      
About this scheme ECgene alternative splicing isoforms for NEK9 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000238616 (uc001xrj.2 uc001xrk.2 uc001xrl.2 )
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Expression for NEK9 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 228 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Primers from
OriGene and/or
SABiosciences
)
About This Section NEK9 expression in normal and diseased human tissues 1 / 2 / 3
6 probe-sets matching NEK9 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
35843_at2 , 3
U95-A
1
0.56
1.00
0.73
0.78
L40402
0.80
1.00
0.91
1
63729_f_at2
U95-C
1589
0.56
0.00
0.81
1.22
--
--
--
--
--
214738_s_at2 , 3
U133-A
1
0.73
1.00
--
--
BE792298
0.60
1.00
0.82
1
212299_at2 , 3
U133-A
1
0.64
1.00
--
--
AL117502
0.40
1.00
0.76
1
214738_s_at2
U133Plus2
1
0.73
1.00
--
--
--
--
--
--
--
212299_at2
U133Plus2
1
0.64
1.00
--
--
--
--
--
--
--
About this table
NEK9 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GAGCTGATGG SOURCE GeneReport for Unigene cluster: Hs.728169 Expression variation in blood from EXPOLDB for NEK9
UniProtKB/Swiss-Prot: NEK9_HUMAN, Q8TD19 Tissue specificity : Most abundant in heart, liver, kidney and testis. Also expressed in smooth muscle cells andfibroblasts
SABiosciences Custom PCR Arrays for NEK9
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Orthologsfor NEK9 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Dec 24 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
About This Section
Orthologs for NEK9 gene from 5/8 species (see all 8 )
About this table Species with no ortholog for NEK9 ENSEMBL Gene Tree for NEK9 (if available)
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Paralogsfor NEK9 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section Paralogs for NEK9 gene NEK2 2 NEK10 2 NEK4 2 NEK6 2 NEK7 2
NEK9 for paralogs About GeneDecksing
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Genomic Variantsfor NEK9 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Resequencing Primers from Qiagen )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Chr 14 pos Sequence Recs AA Chg Type More Recs Allele freq Pop Total sample More
About this table HapMap Linkage Disequilibrium images for NEK9 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for NEK9: --
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Disorders & Mutationsfor NEK9 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
NEK9 for disorders About GeneDecksing
OMIM: 609798 1 PharmGKB disease relationship for NEK9 gene About this table Export disorders and mutations for NEK9 gene to outside databases
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Medical Newsfor NEK9 gene (Possibly Related Articles in
Doctor's Guide )
About This Section --
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Publicationsfor NEK9 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 UniProtKB/TrEMBL , and/or
7 Novoseek )
About This Section 10/28 PubMed articles for NEK9 gene, integrated from 7 sources (see all 28 ): (articles sorted by number of sources associating them with NEK9) Purification, cloning, and characterization of Nek8, a novel NIMA- related kinase, and its candidate substrate Bicd2. (PubMed id 11864968) 1 , 2 , 3, 7 Holland P.M.... Virca G.D. (2002) The NIMA-family kinase Nek6 phosphorylates the kinesin Eg5 at a novel site necessary for mitotic spindle formation. (PubMed id 19001501) 1 , 2 Rapley J....Roig J. (2008) Proteomics analysis of protein kinases by target class-selective prefractionation and tandem mass spectrometry. (PubMed id 17192257) 1 , 2 Wissing J.... Daub H. (2007) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 1 , 2 Olsen J.V....Mann M. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Nek9, a novel FACT-associated protein, modulates interphase progression. (PubMed id 14660563) 1 , 2 Tan B.C.-M. and Lee S.-C. (2004) The DNA sequence and analysis of human chromosome 14. (PubMed id 12508121) 1 , 2 Heilig R.... Weissenbach J. (2003) Nercc1, a mammalian NIMA-family kinase, binds the Ran GTPase and regulates mitotic progression. (PubMed id 12101123) 1 , 2 Roig J.... Avruch J. (2002) Characterization of size-fractionated cDNA libraries generated by the in vitro recombination-assisted method. (PubMed id 12056414) 1 , 2 Ohara O.... Koseki H. (2002) An autoinhibitory tyrosine motif in the cell-cycle-re gulated Nek7 kinase is released through binding of Nek9. (PubMed id 19941817) 1 , 7 Richards M.W....Bayliss R. (2009)
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External Searches for NEK9 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing NEK9 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing NEK9 gene
(According to HUGE )
About This Section
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Specialized Databases showing NEK9 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for NEK9 gene: Search GeneIP for patents involving NEK9 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor NEK9 gene (Antibodies, recombinant proteins, and assays by Millipore , Sigma-Aldrich , R&D Systems , Qiagen , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Epitomics , ProSpec , Uscn , Clones available from Millipore , Sigma-Aldrich , OriGene , GenScript , Sino Biological , PCR Arrays from SABiosciences , Drugs and/or compounds by Sigma-Aldrich , Tocris Bioscience , and/or
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