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NRN1 Gene

protein-coding   GIFtS: 49

GC06M005873
neuritin 1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Products    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases & Descriptions
neuritin 11 2
NRN1 2 3 5
neuritin2
dJ380B8.22
MGC448112

External Ids:    HGNC: 179721   Entrez Gene: 512992   Ensembl: ENSG000001247857   UniProtKB: Q9NPD73   

Export aliases for NRN1 gene to outside databases

Previous GC identifers: GC06M005983 GC06M005943


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for NRN1:
This gene is expressed in postmitotic-differentiating neurons of the developmental nervous system and neuronal
structures associated with plasticity in the adult. The expression of this gene can be induced by neural activity and
neurotrophins. The encoded protein contains a consensus cleavage signal found in glycosylphoshatidylinositol
(GPI)-anchored proteins. In vitro assays demonstrated that this protein promotes neurite outgrowth and arborization,
suggesting its role in promoting neuritogenesis. (provided by RefSeq)

UniProtKB/Swiss-Prot: NRN1_HUMAN, Q9NPD7
Function: Promotes neurite outgrowth and especially branching of neuritic processes in primary hippocampal and cortical
cells (By similarity)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the NRN1 gene promoter:
         MyoD   C/EBPalpha   CUTL1   Cart-1   FOXJ2 (long isoform)   
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for NRN1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for NRN1 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p25.1   Ensembl cytogenetic band:  6p25.1   HGNC cytogenetic band: 6p25.1

NRN1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NRN1 gene location

GeneLoc gene densities for chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M005873:  view genomic region     (about GC identifiers)

Start:
5,873,923 bp from pter
End:
5,883,325 bp from pter
Size:
9,403 bases
Orientation:
minus strand

1 alternative location:
Chr6- 5,998,232-6,007,200     
RefSeq DNA sequence:
NC_000006.11  NT_007592.15  

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
About This Section

UniProtKB/Swiss-Prot: NRN1_HUMAN, Q9NPD7 (See protein sequence)
Recommended Name: Neuritin precursor  
Size: 142 amino acids; 15333 Da
Subcellular location: Cell membrane; Lipid-anchor, GPI-anchor (Potential)
Secondary accessions: B2RA93 Q7Z4Y1

Explore the universe of human proteins at neXtProt for NRN1: NX_Q9NPD7 

REFSEQ proteins: NP_057672.1  

ENSEMBL proteins: 
ENSP00000244766 


Human Recombinant Proteins 
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2 Gene Ontology (GO) cellular component terms (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005886 plasma membrane IEA--
GO:0031225 anchored to membrane IEA--
About this table

NRN1 for ontologies           About GeneDecksing



Antibodies for NRN1: 
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Uscn ELISAs and CLIAs for NRN1 


(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ProtoNet protein and cluster: Q9NPD7

UniProtKB/Swiss-Prot: NRN1_HUMAN, Q9NPD7
Similarity: Belongs to the neuritin family


(According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
About This Section

UniProtKB/Swiss-Prot: NRN1_HUMAN, Q9NPD7
Function: Promotes neurite outgrowth and especially branching of neuritic processes in primary hippocampal and cortical
cells (By similarity)

Inhib.
RNA:
    
Browse for Gene Knock-down Tools from Millipore
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OriGene basic RS shRNA: NRN1
OriGene siRNA: NRN1
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Browse microRNA target validation systems at Sigma-Aldrich 
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of NRN1 
8/19 SABiosciences Assays for microRNAs that regulate NRN1 (see all 19):
hsa-miR-1178 hsa-miR-320a hsa-miR-15a hsa-miR-374a hsa-miR-320c hsa-miR-574-5p hsa-miR-424 hsa-miR-195

Gene
Editing:
Browse CompoZr Knockout ZFN at Sigma-Aldrich 

Clones:Browse Clones for the Expression of Recombinant Proteins Available from Millipore
Browse iPSC Reprogramming Factors at Sigma-Aldrich
OriGene GFP tagged cDNA clones in CMV expression vector: NRN1
OriGene Myc/DDK tagged cDNA clones in CMV expression vector: NRN1
OriGene untagged cDNA clones in CMV expression vector: NRN1
OriGene 3'-UTR clone: NRN1 
Browse MicroRNA Expression Plasmids 
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Cell
Lines:
  
GenScript Custom overexpressing Cell Line Services for NRN1 


(Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
About This Section

    SABiosciences Custom Pathway-Focused PCR Arrays for NRN1 

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NRN1

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section
Browse Small Molecules at Sigma-Aldrich
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for NRN1


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Millipore,
siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
About This Section

Inhib.
RNA:
     
Browse for Gene Knock-down Tools from Millipore
Browse Nano Scale siRNA at Sigma-Aldrich
Sigma-Aldrich esiRNA and siRNA for NRN1
Sigma-Aldrich shRNA for NRN1
OriGene 29mer shRNA kits in GFP-retroviral vector: NRN1
OriGene shRNA RFP: NRN1
OriGene basic RS shRNA: NRN1
OriGene siRNA: NRN1
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of NRN1 
miRNA: Sigma-Aldrich microRNA Mimics for NRN1
Browse microRNA target validation systems at Sigma-Aldrich 
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of NRN1 
8/19 SABiosciences Assays for microRNAs that regulate NRN1 (see all 19):
hsa-miR-1178 hsa-miR-320a hsa-miR-15a hsa-miR-374a hsa-miR-320c hsa-miR-574-5p hsa-miR-424 hsa-miR-195
Clones: Browse FLAG tag genes at Sigma-Aldrich
OriGene GFP tagged cDNA clones in CMV expression vector: NRN1
OriGene Myc/DDK tagged cDNA clones in CMV expression vector: NRN1
OriGene untagged cDNA clones in CMV expression vector: NRN1
OriGene 3'-UTR Clone: NRN1 
Browse OriGene MicroRNA Expression Plasmids 
GenScript cDNA clone with any tag delivered in your preferred vector: NRN1 
Primers: OriGene genome-wide validated SYBR primer pairs: NRN1
Browse OriGene validated miRNA SYBR primer pairs 
SABiosciences RT2 qPCR Primer Assay for NRN1: PPH10899A

REFSEQ mRNAs for NRN1 gene: 

NM_016588.2  

Additional cDNA sequence: 

AF114833.1 AF136631.1 AJ420483.1 AK093824.1 AK314095.1 BC002683.2 BC042019.1 CR591192.1 
CR610397.1 CR610504.1 CR613189.1 CR614740.1 CR615533.1 CR620311.1 CR624108.1 

10 DOTS entries:

DT.445436  DT.100792356  DT.121355089  DT.97762304  DT.100792349  DT.100792353  DT.91928122  DT.100029054 
DT.100792345  DT.95175068 

24/200 AceView cDNA sequences (see all 200):

BU633513 AI919239 BQ774533 CR591192 CR615533 CR614740 BU150419 CR610504 
BU173962 AA054618 CD519184 BG057912 AF136631 AI190645 AA551666 BU177968 
BU185614 CR620311 BX279990 W74094 CR624108 BU190549 BM704247 BQ720570 

highest scoring ESTs for NRN1:

AF114833 AF136631 AI765692 AJ420483 AL541038 AV684909 AV694499 AV698002 BC002683 BC042019 

Unigene Cluster for NRN1:

Neuritin 1
Hs.103291  [show with all ESTs]
Unigene Representative Sequence: BC042019


GeneLoc Exon Structure

5 Alternative Splicing Database (ASD) splice patterns (SP) for NRN1

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c
SP1:        -           -     -     -     -                           
SP2:                    -     -     -     -                           
SP3:                          -           -                           
SP4:                                      -                           
SP5:                                                                  

About this scheme

ECgene alternative splicing isoforms for NRN1
2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000495850 ENST00000244766(uc003mwt.2 uc003mwu.2)

(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Primers from OriGene and/or SABiosciences )
About This Section

NRN1 expression in normal and diseased human tissues

1  / 2  / 3

3 probe-sets matching NRN1 gene

Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
48038_at2, 3 U95-B 1 1.00 1.00 1.00 1.00 AI765692 0.80 1.00 0.91 1
218625_at2, 3 U133-A 1 0.91 1.00 -- -- NM_016588 0.60 1.00 0.82 1
218625_at2 U133Plus2 1 0.91 1.00 -- -- -- -- -- -- --
About this table

NRN1 for expression           About GeneDecksing

Data from Genenote  (Publications) and GNF BioGPS
    About these images
NRN1 gene expression
NRN1 gene electronic northern expression
NRN1 gene sage expression
About these images

CGAP SAGE TAG: CTGCTATGGT

SOURCE GeneReport for Unigene cluster: Hs.103291
Primers: OriGene genome-wide validated SYBR primer pairs: NRN1
Browse OriGene validated miRNA SYBR primer pairs 
SABiosciences RT2 qPCR Primer Assay for NRN1: PPH10899A
    SABiosciences Custom PCR Arrays for NRN1 


(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for NRN1 gene from 5/8 species (see all 8)
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
NRN11   -- neuritin 1 98.12(n)
98.59(a)
612757  XM_843693.1  XP_848786.1 
chimpanzee
(Pan troglodytes)
NRN11   -- neuritin 1 100(n)
100(a)
462412  XM_518219.2  XP_518219.1 
cow
(Bos taurus)
NRN11   -- neuritin 1 97.18(n)
97.89(a)
538730  NM_001046438.1  NP_001039903.1 
mouse
(Mus musculus)
Nrn11 , 5 13 (14.44 cM)5
neuritin 11, 5 96.71(n)1
97.18(a)1
684041  NM_153529.11  NP_705757.11 
 AI8395445  AK0030465  (see all 7)
chicken
(Gallus gallus)
NRN11   -- neuritin 1 81.29(n)
80.58(a)
420873  XM_418961.2  XP_418961.2 
About this table        Species with no ortholog for NRN1

ENSEMBL Gene Tree for NRN1 (if available)

(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
Paralogs for NRN1 gene
NRN1L2  

NRN1 for paralogs           About GeneDecksing



(SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section

10/135 NCBI SNPs in NRN1 are shown (see all 135)
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidChr 6 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
----------
rs1077381,2
C,F,A,6002128(-) TGTTTG/AGGGTA 1 -- int16Minor allele frequency- A:0.42EA NA WA 1494
rs5821861,2
C,F,O,A,6001381(+) GGGGCA/GTTTAG 1 -- int117Minor allele frequency- N:0.00NS EA NA 1220
rs5822621,2
C,F,A,H,6007991(+) CACCTG/CCGATG 1 -- ng5112Minor allele frequency- C:0.48MN NS EA NA WA 960
rs5826771,2
C,A,6008062(+) GGGCAC/TCGGGG 1 -- ng517Minor allele frequency- T:0.30MN NS EA NA 668
rs6097641,2
C,A,6009545(+) GTTCTT/CGCCCT 1 -- ng515Minor allele frequency- C:0.33NA EA WA 214
rs6421511,2
C,A6004186(+) CGGGAA/GGACCG 1 -- int10--------
rs6456491,2
C,F,A,6004959(+) CCGTGC/GGTCCC 1 -- int112Minor allele frequency- G:0.38EA NA NS WA 1962
rs6714621,2
C,6001675(-) CAGCAA/GTCTAG 1 -- int14Minor allele frequency- G:0.30NA EA WA 212
rs6719501,2
C,A,6001583(-) CCCCAA/CAATAA 1 -- int16Minor allele frequency- C:0.50NA EA WA 216
rs6743751,2
C,A,H,6000215(-) TACGAA/GGCCGG 1 -- int16Minor allele frequency- G:0.37EA NA WA 1504
About this table

HapMap Linkage Disequilibrium images for NRN1 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for NRN1
     1 CNV: 0072

QIAGEN SeqTarget long-range PCR primers for resequencing NRN1 

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
About This Section

NRN1 for disorders           About GeneDecksing

OMIM: 607409

1 Novoseek disease relationship for NRN1 gene

Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
tumors 0 2 16723126 (1)
About this table

1 PharmGKB disease relationship for NRN1 gene
Disease PharmGKB Relations PubMed IDs for articles supporting these relationships
Leukemia, Lymphocytic, Acute, L1FA  GN  12730115
About this table


Export disorders and mutations for NRN1 gene to outside databases

(Possibly Related Articles in Doctor's Guide)
About This Section
  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
About This Section

10/16 PubMed articles for NRN1 gene, integrated from 7 sources (see all 16):
(articles sorted by number of sources associating them with NRN1)
  1. Neuritin: a gene induced by neural activity and neurotrophins that promotes neuritogenesis. (PubMed id 9122250)1, 2, 3, 7 Naeve G.S....Theill L.E. (1997)
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
  4. The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)1, 2 Mungall A.J.... Beck S. (2003)
  5. Characterization of the expression of the hypoxia-induced genes neuritin, TXNIP and IGFBP3 in cancer. (PubMed id 16723126)1, 7 Le Jan S....Germain S. (2006)
  6. cpg15 and cpg15-2 constitute a family of activity-regulated ligands expressed differentially in the nervous system to promote neurite growth and neuronal survival. (PubMed id 18265009)1, 7 Fujino T....Nedivi E. (2008)
  7. Classification of pediatric acute lymphoblastic leukemia by gene expression profiling. (PubMed id 12730115)5 Ross M.E....Downing J.R. (2003)
  8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
  9. Neuritin (cpg15) enhances the differentiating effect of NGF on neuronal PC12 cells. (PubMed id 17335086)7 Cappelletti G....Poletti A. (2007)
  10. Impact of Neuritin 1 (NRN1) polymorphisms on fluid in telligence in schizophrenia. (PubMed id 19569075)7 Chandler D....Jablensky A. (2010)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Disorders
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 51299 HGNC: 17972 AceView: NRN1 Ensembl:ENSG00000124785 euGenes: HUgn51299
ECgene: NRN1 H-InvDB: NRN1

(According to HUGE)
About This Section
  --

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
ATLAS Chromosomes in Cancer entry for NRN1 Genetics and Cytogenetics in Oncology and Haematology

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from XenneX, Inc.)
About This Section
Patent Information for NRN1 gene:
Search GeneIP for patents involving NRN1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or Enzo Life Sciences)
About This Section

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