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NSUN3 Gene

protein-coding   GIFtS: 41

GC03P091144
NOP2/Sun domain family, member 3
(Previous names: NOL1/NOP2/Sun domain family 3, NOL1/NOP2/Sun domain family, member 3 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Products    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases & Descriptions
NOP2/Sun domain family, member 31 2     FLJ221092
NOL1/NOP2/Sun domain family 31 2     putative methyltransferase NSUN32
FLJ226091 2     MST0772
NOL1/NOP2/Sun domain family, member 31 2     EC 2.1.1.-3
NOL1/NOP2/Sun domain family member 32 3     

External Ids:    HGNC: 262081   Entrez Gene: 638992   Ensembl: ENSG000001786947   UniProtKB: Q9H6493   

Export aliases for NSUN3 gene to outside databases

Previous GC identifers: GC03P095264 GC03P093781


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: NSUN3_HUMAN, Q9H649
Function: May have S-adenosyl-L-methionine-dependent methyl-transferase activity (Potential)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 60), Regulatory elements and Epigenetics data according to Qiagen and/or SABiosciences)
About This Section

Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the NSUN3 gene promoter:
         IRF-7A   C/EBPbeta   Chx10   RREB-1   FOXJ2 (long isoform)   Cdc5   AREB6   FOXD3   POU2F1   FOXL1   
         Other transcription factors

   Search SABiosciences Chromatin IP Primers for NSUN3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for NSUN3 


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q11.1   Ensembl cytogenetic band:  3q11.1   HGNC cytogenetic band: 3q11.2

NSUN3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NSUN3 gene location

GeneLoc gene densities for chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P091144:  view genomic region     (about GC identifiers)

Start:
91,144,472 bp from pter
End:
91,208,238 bp from pter
Size:
63,767 bases
Orientation:
plus strand

1 alternative location:
Chr3+ 93,781,760-93,847,389     
RefSeq DNA sequence:
NC_000003.11  NT_005612.16  

(According to 1UniProtKB, neXtProt, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, and/or ProSpec,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Dec 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, and/or Epitomics)
About This Section

UniProtKB/Swiss-Prot: NSUN3_HUMAN, Q9H649 (See protein sequence)
Recommended Name: Putative methyltransferase NSUN3  
Size: 340 amino acids; 38244 Da
Sequence caution: Sequence=AAN76512.1; Type=Miscellaneous discrepancy; Note=Chimera; Sequence=AAQ13600.1;
Type=Frameshift; Positions=98; Sequence=BAB15234.1; Type=Erroneous initiation;
Secondary accessions: Q6PG41 Q8IXG9 Q9H6M2

Explore the universe of human proteins at neXtProt for NSUN3: NX_Q9H649 

REFSEQ proteins: NP_071355.1  

ENSEMBL proteins: 
ENSP00000318986 ENSP00000419297 


Human Recombinant Proteins 
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Browse recombinant and purified proteins available from Enzo Life Sciences
Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
OriGene Protein Over-expression Lysate: NSUN3
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Novus Biologicals Protein for NSUN3
Novus Biologicals Lysate for NSUN3
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Browse ProSpec Recombinant Proteins


Antibodies for NSUN3: 
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Sigma-Aldrich Antibodies for NSUN3
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GenScript Custom Superior Antibodies Services for NSUN3 
Browse antibodies at Epitomics

Assays for NSUN3: 
Browse Kits and Assays available from Millipore
Browse ELISAs at Sigma-Aldrich
OriGene Custom Immunoassay Development 
Browse OriGene Fluorogenic Cell Assay Kits 
Browse R&D Systems for biochemical assays
GenScript Custom Assay Services for NSUN3 
Browse Enzo Life Sciences for kits & assays
Browse ELISAs and CLIAs at Uscn 


(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

NSUN3 for domains           About GeneDecksing

1 InterPro domain/family:
 IPR001678 Fmu/NOL1/Nop2p

Graphical View of Domain Structure for InterPro Entry Q9H649

ProtoNet protein and cluster: Q9H649

1 Blocks protein family: IPB001678 Bacterial Sun/eukaryotic nucleolar Nop1/Nop2

UniProtKB/Swiss-Prot: NSUN3_HUMAN, Q9H649
Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family


(According to UniProtKB, IUBMB,and/or Genatlas, Animal models from MGI Dec 24 2010,
shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich, microRNA from Sigma-Aldrich, Qiagen, SABiosciences, Clones from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, Cell Lines from GenScript, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene.)
About This Section

UniProtKB/Swiss-Prot: NSUN3_HUMAN, Q9H649
Function: May have S-adenosyl-L-methionine-dependent methyl-transferase activity (Potential)
Enzyme Number (IUBMB): EC 2.1.1.- 

Inhib.
RNA:
    
Browse for Gene Knock-down Tools from Millipore
Browse Nano Scale siRNA at Sigma-Aldrich
Sigma-Aldrich esiRNA and siRNA for NSUN3
Sigma-Aldrich shRNA for NSUN3
OriGene 29mer shRNA kits in GFP-retroviral vector: NSUN3
OriGene shRNA RFP: NSUN3
OriGene basic RS shRNA: NSUN3
OriGene siRNA: NSUN3
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of NSUN3 
miRNA:Sigma-Aldrich microRNA Mimics for NSUN3
Browse microRNA target validation systems at Sigma-Aldrich 
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of NSUN3 
Search SABiosciences for Assays for microRNAs that regulate NSUN3

Gene
Editing:
Browse CompoZr Knockout ZFN at Sigma-Aldrich 

Clones:Browse Clones for the Expression of Recombinant Proteins Available from Millipore
Browse iPSC Reprogramming Factors at Sigma-Aldrich
OriGene GFP tagged cDNA clones in CMV expression vector: NSUN3
OriGene Myc/DDK tagged cDNA clones in CMV expression vector: NSUN3
OriGene untagged cDNA clones in CMV expression vector (see all 2): NSUN3
OriGene 3'-UTR clone: NSUN3 
Browse MicroRNA Expression Plasmids 
GenScript Custom cDNA clone Services for NSUN3 
Browse Sino Biological Human cDNA Clones

Cell
Lines:
  
GenScript Custom overexpressing Cell Line Services for NSUN3 

2 Gene Ontology (GO) molecular function terms (GO ID links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0008168 methyltransferase activity IEA--
GO:0016740 transferase activity IEA--
About this table

NSUN3 for ontologies           About GeneDecksing


(Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB, Sets of similar genes according to GeneDecks, PCR Arrays from SABiosciences, Proteins Network according to SABiosciences, Sigma-Aldrich, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Dec 2010 via Entrez Gene).
About This Section

    SABiosciences Custom Pathway-Focused PCR Arrays for NSUN3 

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NSUN3

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section
Browse Small Molecules at Sigma-Aldrich
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for NSUN3


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 228 Homo sapiens; Dec 8 2010) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Millipore,
siRNAs from Sigma-Aldrich, OriGene, Qiagen, Super-pooled esiRNAs from Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene, microRNA from Sigma-Aldrich, Qiagen, SABiosciences,
Tagged/untagged cDNA clones from OriGene, Sigma-Aldrich, GenScript, Primers from OriGene and/or SABiosciences)
About This Section

Inhib.
RNA:
     
Browse for Gene Knock-down Tools from Millipore
Browse Nano Scale siRNA at Sigma-Aldrich
Sigma-Aldrich esiRNA and siRNA for NSUN3
Sigma-Aldrich shRNA for NSUN3
OriGene 29mer shRNA kits in GFP-retroviral vector: NSUN3
OriGene shRNA RFP: NSUN3
OriGene basic RS shRNA: NSUN3
OriGene siRNA: NSUN3
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of NSUN3 
miRNA: Sigma-Aldrich microRNA Mimics for NSUN3
Browse microRNA target validation systems at Sigma-Aldrich 
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of NSUN3 
Search SABiosciences for Assays for microRNAs that regulate NSUN3
Clones: Browse FLAG tag genes at Sigma-Aldrich
OriGene GFP tagged cDNA clones in CMV expression vector: NSUN3
OriGene Myc/DDK tagged cDNA clones in CMV expression vector: NSUN3
OriGene untagged cDNA clones in CMV expression vector (see all 2): NSUN3
OriGene 3'-UTR Clone: NSUN3 
Browse OriGene MicroRNA Expression Plasmids 
GenScript Custom cDNA clone Services for NSUN3 
Primers: OriGene genome-wide validated SYBR primer pairs: NSUN3
Browse OriGene validated miRNA SYBR primer pairs 
SABiosciences RT2 qPCR Primer Assay for NSUN3: PPH08191A

REFSEQ mRNAs for NSUN3 gene: 

NM_022072.3  

Additional cDNA sequence: 

AF169972.1 AK026262.1 BC018432.1 BC020602.1 BC057238.1 CR594640.1 

4 DOTS entries:

DT.413029  DT.91793842  DT.120888284  DT.97839066 

24/58 AceView cDNA sequences (see all 58):

AA416796 CR594640 BE891052 BM469478 AI702903 BC018432 AA807341 AA705035 
AA736939 N62649 BU665363 BG502931 AA777523 AI332912 NM_022072 BC020602 
BM477400 AA700816 AA694053 C00750 BC057238 BX090417 BG251198 BG528694 

highest scoring ESTs for NSUN3:

AA700816 AA429938 AA682850 AA694053 AA736939 AF169972 AI332912 AI417596 AI586968 AI702903 

Unigene Cluster for NSUN3:

NOP2/Sun domain family, member 3
Hs.448003  [show with all ESTs]
Unigene Representative Sequence: BC020602


GeneLoc Exon Structure

3 Alternative Splicing Database (ASD) splice patterns (SP) for NSUN3

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7
SP1:              -     -                                       
SP2:                    -                                       
SP3:                                                            

About this scheme

ECgene alternative splicing isoforms for NSUN3
7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000468555 ENST00000461625 ENST00000476588 ENST00000485793 ENST00000477077(uc003drk.2)
ENST00000314622(uc003drl.1) ENST00000483378

(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 228 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Primers from OriGene and/or SABiosciences )
About This Section

NSUN3 expression in normal and diseased human tissues

1  / 2  / 3

6 probe-sets matching NSUN3 gene

Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
59085_at2, 3 U95-B 1 1.00 1.00 1.00 1.00 AA700816 1.00 1.00 1.00 1
219458_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_022072 0.60 1.00 0.82 1
222886_at*2, 3 U133-B 1 0.46 1.00 -- -- AK025762 0.60 1.00 0.82 1
219458_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
1568913_at2 U133Plus2 1 0.73 1.00 -- -- -- -- -- -- --
222886_at*2 U133Plus2 1 0.46 1.00 -- -- -- -- -- -- --
About this table

NSUN3 for expression           About GeneDecksing

Data from Genenote  (Publications) and GNF BioGPS
    About these images
NSUN3 gene expression
NSUN3 gene electronic northern expression
NSUN3 gene sage expression
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.448003
Primers: OriGene genome-wide validated SYBR primer pairs: NSUN3
Browse OriGene validated miRNA SYBR primer pairs 
SABiosciences RT2 qPCR Primer Assay for NSUN3: PPH08191A
    SABiosciences Custom PCR Arrays for NSUN3 


(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Dec 24 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for NSUN3 gene from 5/6 species (see all 6)
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
NSUN31   -- NOL1/NOP2/Sun domain family, member 3 88.82(n)
88.92(a)
607320  XM_843944.1  XP_849037.1 
chimpanzee
(Pan troglodytes)
NSUN31   -- NOL1/NOP2/Sun domain family, member 3 99.41(n)
99.12(a)
460536  XM_516606.2  XP_516606.2 
cow
(Bos taurus)
NSUN31   -- NOL1/NOP2/Sun domain family, member 3 91.2(n)
91.69(a)
533791  NM_001076001.1  NP_001069469.1 
mouse
(Mus musculus)
Nsun31 , 5 16 (36.43 cM)5
NOL1/NOP2/Sun domain family member 31, 5 84.17(n)1
82.6(a)1
1063381  NM_178925.21  NP_849256.11 
 AI5276305  AK0201725  (see all 19)
chicken
(Gallus gallus)
NSUN31   -- NOL1/NOP2/Sun domain family, member 3 68.59(n)
67.88(a)
418432  XM_416643.2  XP_416643.1 
About this table        Species with no ortholog for NSUN3

ENSEMBL Gene Tree for NSUN3 (if available)

(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
Paralogs for NSUN3 gene
NOP22  NSUN62  NSUN42  

NSUN3 for paralogs           About GeneDecksing



(SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Resequencing Primers from Qiagen)
About This Section

10/345 NCBI SNPs in NSUN3 are shown (see all 345)
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidChr 3 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
----------
rs29651,2
C,F,H,93818466(-) GGACTC/AGGAAT 1 -- int120Minor allele frequency- A:0.47MN EA NA NS WA 1036
rs9217271,2
C,F,A,93833508(+) TTACAC/AGGATG 1 -- int19Minor allele frequency- A:0.45NA EA WA 356
rs9217281,2
C,F,A,93833575(+) ATAGCG/ACCAAA 1 -- int113Minor allele frequency- A:0.47NA NS EA WA 742
rs9308151,2
C,F,93838561(+) CTTTGA/CATACA 1 -- int17Minor allele frequency- C:0.03NA EA NS WA 378
rs38859851,2
C93816488(+) GTTCTC/GCAAAA 1 -- int13Minor allele frequency- G:0.01NA 138
rs48570261,2
C,F,93838048(+) TATATT/CGTAAA 1 -- int15Minor allele frequency- C:0.01NS EA 506
rs48571711,2
C,A93829072(+) GATAGA/GAAGTT 1 -- int10--------
rs48571721,2
C,F,A,93829155(+) TTTCAG/TTGATA 1 -- int13Minor allele frequency- T:0.33NA 6
rs48571731,2
C,F,A,93829475(+) TTCCAA/CGATAT 1 -- int116Minor allele frequency- C:0.22NS EA NA WA 784
rs58509231,2
--93821061(+) aaaaa-/Aaaaaa 1 -- int1 trp30--------
About this table

HapMap Linkage Disequilibrium images for NSUN3 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
      Database of Genomic Variants (DGV) variations for NSUN3: --

QIAGEN SeqTarget long-range PCR primers for resequencing NSUN3 

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, and/or TGDB.)
About This Section

NSUN3 for disorders           About GeneDecksing

Human Genome Epidemiology (HuGE) Navigator: NSUN3 (1 document)

Export disorders and mutations for NSUN3 gene to outside databases

(Possibly Related Articles in Doctor's Guide)
About This Section
  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6UniProtKB/TrEMBL, and/or 7Novoseek)
About This Section

5 PubMed articles for NSUN3 gene integrated from 7 sources:
(articles sorted by number of sources associating them with NSUN3)
  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
  2. Coeliac disease associated risk variants in TNFAIP3 and REL implicate altered NF-{kappa}B signalling. (PubMed id 19240061)1 Trynka G....Wijmenga C. (2009)
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (2004)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 63899 HGNC: 26208 AceView: NSUN3 Ensembl:ENSG00000178694 euGenes: HUgn63899
ECgene: NSUN3 H-InvDB: NSUN3

(According to HUGE)
About This Section
  --

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
  --

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from XenneX, Inc.)
About This Section
Patent Information for NSUN3 gene:
Search GeneIP for patents involving NSUN3

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays by Millipore, Sigma-Aldrich, R&D Systems, Qiagen, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Epitomics, ProSpec, Uscn,
Clones available from Millipore, Sigma-Aldrich, OriGene, GenScript, Sino Biological, PCR Arrays from SABiosciences, Drugs and/or compounds by Sigma-Aldrich, Tocris Bioscience, and/or Enzo Life Sciences)
About This Section

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 Predesigned and custom siRNAs for NSUN3 Antibodies for NSUN3
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 "Your Favorite Gene" Pathways and Molecular Interaction Networks Browse Nano Scale siRNA at Sigma-Aldrich
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 QIAGEN Custom miScript Target Protector blocks miRNA-binding site of NSUN3
 SeqTarget long-range PCR primers for resequencing NSUN3
 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays for NSUN3
 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing of NSUN3
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 Regulatory tfbs in NSUN3 promoter
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 Browse ELISAs and CLIAs at Uscn
       

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